Contig 008088:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031A09Sequence555012913 (9)ref|XP_010270927.1|138PREDICTED: uncharacterized protein LOC104607107, partial [Nelumbo nucifera]753008088 (9)ref|XP_009617529.1|372PREDICTED: uncharacterized protein LOC104109859 [Nicotiana tomentosiformis]
JMFF044J21Sequence637012913 (9)ref|XP_010270927.1|184PREDICTED: uncharacterized protein LOC104607107, partial [Nelumbo nucifera]584008088 (9)ref|XP_009617529.1|277PREDICTED: uncharacterized protein LOC104109859 [Nicotiana tomentosiformis]
JMSF003C05Sequence363012913 (9)ref|XP_010270927.1|135PREDICTED: uncharacterized protein LOC104607107, partial [Nelumbo nucifera]716008088 (9)ref|XP_009617529.1|374PREDICTED: uncharacterized protein LOC104109859 [Nicotiana tomentosiformis]
JMSF012L13Sequence236012913 (9)729008088 (9)ref|XP_009773068.1|365PREDICTED: uncharacterized protein LOC104223342 [Nicotiana sylvestris]
JMSF042J16Sequence839012913 (9)ref|XP_010270927.1|291PREDICTED: uncharacterized protein LOC104607107, partial [Nelumbo nucifera]795008088 (9)ref|XP_009773068.1|373PREDICTED: uncharacterized protein LOC104223342 [Nicotiana sylvestris]
JMSF045N24Sequence774012913 (9)ref|XP_010270927.1|277PREDICTED: uncharacterized protein LOC104607107, partial [Nelumbo nucifera]733008088 (9)ref|XP_009617529.1|368PREDICTED: uncharacterized protein LOC104109859 [Nicotiana tomentosiformis]
JMSF047J13Sequence675012913 (9)ref|XP_010270927.1|207PREDICTED: uncharacterized protein LOC104607107, partial [Nelumbo nucifera]762008088 (9)ref|XP_009773068.1|391PREDICTED: uncharacterized protein LOC104223342 [Nicotiana sylvestris]
JMSF050D22Sequence670008088 (9)ref|XP_009617529.1|328PREDICTED: uncharacterized protein LOC104109859 [Nicotiana tomentosiformis]
JMSF051A03Sequence687012913 (9)ref|XP_010270927.1|205PREDICTED: uncharacterized protein LOC104607107, partial [Nelumbo nucifera]732008088 (9)ref|XP_009617529.1|372PREDICTED: uncharacterized protein LOC104109859 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF042J16+                                                               CACTTCA
                      ____________________________________________________________
consensus                                                                  CACTTCA
 
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rJMSF047J13+                               GTCAAAGCCACTGTGCAGATCGCTCGTCTCAC-TTTCGA
rJMSF051A03+                                                                   CGA
rJMSF012L13+                                                                   CGA
rJMSF042J16+          ATAGGNCCTATATTCGAGTCCGTCAAAGCCACTGTGCAGATCGCTCGTCTCACNTTTCGA
                      ____________________________________________________________
consensus             ATAGGNCCTATATTCGAGTCCGTCAAAGCCACTGTGCAGATCGCTCGTCTCACNTTTCGA
 
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rJMSF047J13+          TCCTTCAAATTTGACCGACGATGGCGATGATGATTCAGACGAAA-TCCCCGTGGAAATCA
rJMSF051A03+          TCCTTCAAATTTGACCGACGATGGCGATGATGATTCAGACGAAA-TCCCCGTGGAAATCA
rJMSF003C05+                      GACCGACGATGGCGATGATGATTCAGACGAAA-TCCCCGTGGAAATCA
rJMSF012L13+          TCCTTCAAATTTGACCGACGATGGCGATGATGATTCAGACGAAA-TCCCCGTGGAAATCA
rJMSF045N24+                AAATTTGACCGACGATGGCGATGATGATTCAGACGAAATTCCCCGTGGAAATCA
rJMSF042J16+          TCCTTCAAATTTGACCGACGATGGCGATGATGATTCAGACGAAA-TCCCCGTGGAAATCA
rJMFF031A09+            CTTCAAATTTGACCGACGATGGCGATGATGATTCAGACGAAA-TCCCCGTGGAAATCA
                      ____________________________________________________________
consensus             TCCTTCAAATTTGACCGACGATGGCGATGATGATTCAGACGAAA-TCCCCGTGGAAATCA
 
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rJMSF047J13+          AGGTTTTGACGAAAGAAACCACCGGCAATAACGCATTTCCGTCTTGCTCGCCTGACGGAA
rJMSF051A03+          AGGTTTTGACGAAAGAAACCACCGGCAATAACGCATTTCCGTCTTGCTCGCCTGACGGAA
rJMSF003C05+          AGGTTTTGACGAAAGAAACCACCGGCAATAACGCATTTCCGTCTTGCTCGCCTGACGGAA
rJMSF012L13+          AGGTTTTGACGAAAGAAACCACCGGCAATAACGCATTTCCGTCTTGCTCGCCTGACGGAA
rJMSF045N24+          AGGTTTTGACGAAAGAAACCACCGGCAATAACGCATTTCCGTCTTGCTCGCCTGACGGAA
rJMSF042J16+          AGGTTTTGACGAAAGAAACCACCGGCAATAACGCATTTCCGTCTTGCTCGCCTGACGGAA
rJMFF031A09+          AGGTTTTGACGAAAGAAACCACCGGCAATAACGCATTTCCGTCTTGCTCGCCTGACGGAA
JMSF050D22-                                                            GCCTGACGGAA
                      ____________________________________________________________
consensus             AGGTTTTGACGAAAGAAACCACCGGCAATAACGCATTTCCGTCTTGCTCGCCTGACGGAA
 
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rJMSF047J13+          AACACATCGTCTTTCGTTCTGGCCGGTCCGGCCACAAAAATCTCTACATAATCGATTCTC
rJMSF051A03+          AACACATCGTCTTTCGTTCTGGCCGGTCCGGCCACAAAAATCTCTACATAATCGATTCTC
rJMSF003C05+          AACACATCGTCTTTCGTTCTGGCCGGTCCGGCCACAAAAATCTCTACATAATCGATTCTC
rJMSF012L13+          AACACATCGTCTTTCGTTCTGGCCGGTCCGGCCACAAAAATCTCTACATAATCGATTCTC
rJMSF045N24+          AACACATCGTCTTTCGTTCTGGCCGGTCCGGCCACAAAAATCTCTACATAATCGATTCTC
rJMSF042J16+          AACACATCGTCTTTCGTTCTGGCCGGTCCGGCCACAAAAATCTCTACATAATCGATTCTC
rJMFF031A09+          AACACATCGTCTTTCGTTCTGGCCGGTCCGGCCACAAAAATCTCTACATAATCGATTCTC
JMSF050D22-           AACACATCGTCTTTCGTTCTGGCCGGTCCGGCCACAAAAATCTCTACATAATCGATTCTC
                      ____________________________________________________________
consensus             AACACATCGTCTTTCGTTCTGGCCGGTCCGGCCACAAAAATCTCTACATAATCGATTCTC
 
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rJMSF047J13+          TCAATGGCGAATTAGACGGCGGCGGAATCCGGCAGTTAACAGATGGAGCTTGGATTGATA
rJMSF051A03+          TCAATGGCGAATTAGACGGCGGCGGAATCCGGCAGTTAACAGATGGAGCTTGGATTGATA
rJMSF003C05+          TCAATGGCGAATTAGACGGCGGCGGAATCCGGCAGTTAACAGATGGAGCTTGGATTGATA
rJMSF012L13+          TCAATGGCGAATTAGACGGCGGCGGAATCCGGCAGTTAACAGATGGAGCTTGGATTGATA
rJMSF045N24+          TCAATGGCGAATTAGACGGCGGCGGAATCCGGCAGTTAACAGATGGAGCTTGGATTGATA
rJMSF042J16+          TCAATGGCGAATTAGACGGCGGCGGAATCCGGCAGTTAACAGATGGAGCTTGGATTGATA
rJMFF031A09+          TCAATGGCGAATTAGACGGCGGCGGAATCCGGCAGTTAACAGATGGAGCTTGGATTGATA
rJMFF044J21+                  GAATTAGACGGCGGCGGAATCCGGCAGTTAACAGATGGAGCTTGGATTGATA
JMSF050D22-           TCAATGGCGAATTAGACGGCGGCGGAATCCGGCAGTTAACAGATGGAGCTTGGATTGATA
                      ____________________________________________________________
consensus             TCAATGGCGAATTAGACGGCGGCGGAATCCGGCAGTTAACAGATGGAGCTTGGATTGATA
 
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rJMSF047J13+          CCATGCCTAGCTGGTCACCGGACGGAAAATTGATCGCGTTCTCCTCCAACAGACACAACC
rJMSF051A03+          CCATGCCTAGCTGGTCACCGGACGGAAAATTGATCGCGTTCTCCTCCAACAGACACAACC
rJMSF003C05+          CCATGCCTAGCTGGTCACCGGACGGAAAATTGATCGCGTTCTCCTCCAACAGACACAACC
rJMSF012L13+          CCATGCCTAGCTGGTCACCGGACGGAAAATTGATCGCGTTCTCCTCCAACAGACACAACC
rJMSF045N24+          CCATGCCTAGCTGGTCACCGGACGGAAAATTGATCGCGTTCTCCTCCAACAGACACAACC
rJMSF042J16+          CCATGCCTAGCTGGTCACCGGACGGAAAATTGATCGCGTTCTCCTCCAACAGACACAACC
rJMFF031A09+          CCATGCCTAGCTGGTCACCGGACGGAAAATTGATCGCGTTCTCCTCCAACAGACACAACC
rJMFF044J21+          CCATGCCTAGCTGGTCACCGGACGGAAAATTGATCGCGTTCTCCTCCAACAGACACAACC
JMSF050D22-           CCATGCCTAGCTGGTCACCGGACGGAAAATTGATCGCGTTCTCCTCCAACAGACACAACC
                      ____________________________________________________________
consensus             CCATGCCTAGCTGGTCACCGGACGGAAAATTGATCGCGTTCTCCTCCAACAGACACAACC
 
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rJMSF047J13+          CAGGCAACGCCGACTGTTTTAGCATCTACGTCGTTCGTCCGGACGGAACAGGTCTCCGTA
rJMSF051A03+          CAGGCAACGCCGACTGTTTTAGCATCTACGTCGTTCGTCCGGACGGAACAGGTCTCCGTA
rJMSF003C05+          CAGGCAACGCCGACTGTTTTAGCATCTACGTCGTTCGTCCGGACGGAACAGGTCTCCGTA
rJMSF012L13+          CAGGCAACGCCGACTGTTTTAGCATCTACGTCGTTCGTCCGGACGGAACAGGTCTCCGTA
rJMSF045N24+          CAGGCAACGCCGACTGTTTTAGCATCTACGTCGTTCGTCCGGACGGAACAGGTCTCCGTA
rJMSF042J16+          CAGGCAACGCCGACTGTTTTAGCATCTACGTCGTTCGTCCGGACGGAACAGGTCTCCGTA
rJMFF031A09+          CAGGCAACGCCGACTGTTTTAGCATCTACGTCGTTCGTCCGGACGGAACAGGTCTCCGTA
rJMFF044J21+          CAGGCAACGCCGACTGTTTTAGCATTTACGTCGTTCGTCCGGACGGAACAGGTCTCCGTA
JMSF050D22-           CAGGCAACGCCGACTGTTTTAGCATCTACGTCGTTCGTCCGGACGGAACAGGTCTCCGTA
                      ____________________________________________________________
consensus             CAGGCAACGCCGACTGTTTTAGCATCTACGTCGTTCGTCCGGACGGAACAGGTCTCCGTA
 
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rJMSF047J13+          GAATCCACGTGGCAGGAGCGGAAGGATCGGAGGAGGTGAACAGAGAGAGACTGAATCATG
rJMSF051A03+          GAATCCACGTGGCAGGAGCGGAAGGATCGGAGGAGGTGAACAGAGAGAGACTGAATCATG
rJMSF003C05+          GAATCCACGTGGCAGGAGCGGAAGGATCGGAGGAGGTGAACAGAGAGAGACTGAATCATG
rJMSF012L13+          GAATCCACGTGGCAGGAGCGGAAGGATCGGAGGAGGTGAACAGAGAGAGACTGAATCATG
rJMSF045N24+          GAATCCACGTGGCAGGAGCGGAAGGATCGGAGGAGGTGAACAGAGAGAGACTGAATCATG
rJMSF042J16+          GAATCCACGTGGCAGGAGCGGAAGGATCGGAGGAGGTGAACAGAGAGAGACTGAATCATG
rJMFF031A09+          GAATCCACGTGGCAGGAGCGGAAGGATCGGAGGAGGTGAACAGAGAGAGGCTGAATCATG
rJMFF044J21+          GAATCCACGTGGCAGGAGCGGAAGGATCGGAGGAGGTGAACAGAGAGAGACTGAATCATG
JMSF050D22-           GAATCCACGTGGCAGGAGCGGAAGGATCGGAGGAGGTGAACAGAGAGAGACTGAATCATG
                      ____________________________________________________________
consensus             GAATCCACGTGGCAGGAGCGGAAGGATCGGAGGAGGTGAACAGAGAGAGACTGAATCATG
 
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rJMSF047J13+          TGTGTTTCAGTCCGGACAGTGAGTGGGTGCTGTTCACGGCGAACTTGGGCGGCGTGACGG
rJMSF051A03+          TGTGTTTCAGTTCGGACAGTGAGTGGGTGCTGTTCACGGCGAACTTGGGCGGCGTGACGG
rJMSF003C05+          TGTGTTTCAGTTCGGACAGTGAGTGGGTGCTGTTCACGGCGAACTTGGGCGGCGTGACGG
rJMSF012L13+          TGTGTTTCAGTTCGGACAGTGAGTGGGTGCTGTTCACGGCGAACTTGGGCGGCGTGACGG
rJMSF045N24+          TGTGTTTCAGTTCGGACAGTGAGTGGGTGCTGTTCACGGCGAACTTGGGCGGCGTGACGG
rJMSF042J16+          TGTGTTTCAGTTCGGACAGTGAGTGGGTGCTGTTCACGGCGAACTTGGGCGGCGTGACGG
rJMFF031A09+          TGTGTTTCAGTTCGGACAGTGAGTGGGTGCTGTTCACGGCGAACTTGGGCGGCGTGACGG
rJMFF044J21+          TGTGTTTCAGTTCGGACAGTGAGTGGGTGCTGTTCACGGCGAACTTGGGCGGCGTGACGG
JMSF050D22-           TGTGTTTCAGTTCGGACAGTGAGTGGGTGCTGTTCACGGCGAACTTGGGCGGCGTGACGG
                      ____________________________________________________________
consensus             TGTGTTTCAGTTCGGACAGTGAGTGGGTGCTGTTCACGGCGAACTTGGGCGGCGTGACGG
 
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rJMSF047J13+          CGGAGCCGGTGTCGATACCCAACCAGTTTCAGCCCTACGGTGACCTATACATGATGAGGT
rJMSF051A03+          CGGAGCCGGTGTCGATACCCAACCAGTTTCAGCCCTACGGTGACCTATACATGATGAGGT
rJMSF003C05+          CGGAGCCGGTGTCGATACCCAACCAGTTTCAGCCCTACGGTGACCTATACATGATGAGGT
rJMSF012L13+          CGGAGCCGGTGTCGATACCCAACCAGTTTCAGCCCTACGGTGACCTATACATGATGAGGT
rJMSF045N24+          CGGAGCCGGTGTCGATACCCAACCAGTTTCAGCCCTACGGTGACCTATACATGATGAGGT
rJMSF042J16+          CGGAGCCGGTGTCGATACCCAACCAGTTTCAGCCCTACGGTGACCTATACATGATGAGGT
rJMFF031A09+          CGGAGCCGGTGTCGATACCCAACCAGTTTCAGCCCTACGGTGACCTATACATGATGAGGT
rJMFF044J21+          CGGAGCCGGTGTCGATACCCAACCAGTTTCAGCCCTACGGTGACCTATACATGATGAGGT
JMSF050D22-           CGGAGCCGGTGTCGATACCCAACCAGTTTCAGCCCTACGGTGACCTATACATGATGAGGT
                      ____________________________________________________________
consensus             CGGAGCCGGTGTCGATACCCAACCAGTTTCAGCCCTACGGTGACCTATACATGATGAGGT
 
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rJMSF047J13+          TAGACGGGACGGGACTGCAGAGGCTGACGTGGAATGGATATGAGAATGGCACGCCAGCGT
rJMSF051A03+          TAGACGGGACGGGACTGCAGAGGCTGACGTGGAATGGATATGAGAATGGCACGCCAGCGT
rJMSF003C05+          TAGACGGGACGGGACTGCAGAGGCTGACGTGGAATGGATATGAGAATGGCACGCCAGCGT
rJMSF012L13+          TAGACGGGACGGGACTGCAGAGGCTGACGTGGAATGGATATGAGAATGGCACGCCAGCGT
rJMSF045N24+          TAGACGGGACGGGACTGCAGAGGCTGACGTGGAATGGATATGAGAATGGCACGCCAGCGT
rJMSF042J16+          TAGACGGGACGGGACTGCAGAGGCTGACGTGGAATGGATATGAGAATGGCACGCCAGCGT
rJMFF031A09+          TAGACGGGACGGGACTGCAGAGGCTGACGTGGAATGGATATGAGAATGGCACGCCAGCGT
rJMFF044J21+          TAGACGGGACGGGACTGCAGGGGCTGACGTGGAATGGATATGAGAATGGCACGCCAGCGT
JMSF050D22-           TAGACGGGACGGGACTGCAGAGGCTGACGTGGAATGGATATGAGAATGGCACGCCAGCGT
                      ____________________________________________________________
consensus             TAGACGGGACGGGACTGCAGAGGCTGACGTGGAATGGATATGAGAATGGCACGCCAGCGT
 
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rJMSF047J13+          GGCACCCCAAAGCTGAGGTGGACTTGGCTCGCCTCTCCTTGGGCAAGAGCGGTGAAAAGT
rJMSF051A03+          GGCACCCCAAAGCTGAGGTGGACTTGGCTCGCCTCTCCTTGGGCAAGAGCGGTGAAAAGT
rJMSF003C05+          GGCACCCCAAAGCTGAGGTGGACTTGGCTCGCCTCTCCTTGGGCAAGAGCGGTGAAAAGT
rJMSF012L13+          GGCACCCCAAAGCTGAGGTGGACTTGGCTCGCCTCTCCTTGGGCAAGAGCGGTGAAAAGT
rJMSF045N24+          GGCACCCCAAAGCTGAGGTGGACTTGGCTCGCCTCTCCTTGGGCAAGAGCGGTGAAAAGT
rJMSF042J16+          GGCACCCCAAAGCTGAGGTGGACTTGGCTCGCCTCTCCTTGGGCAAGAGCGGTGAAAAGT
rJMFF031A09+          GGCACCCCAAAGCTGAGGTGGACTTGGCTCGCCTCTCCTTGGGCAAGAGCGGTGAAAAGT
rJMFF044J21+          GGCACCCCAAAGCTGAGGTGGACTTGGCTCGCCTCTCCTTGGGCAAGAGCGGTGAAAAGT
JMSF050D22-           GGCACCCCAAAGCTGAGGTGGACTTGGCTCGCCTCTCCTTGGGCAAGAGCGGTGAAAAGT
                      ____________________________________________________________
consensus             GGCACCCCAAAGCTGAGGTGGACTTGGCTCGCCTCTCCTTGGGCAAGAGCGGTGAAAAGT
 
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rJMSF047J13+          TGAGAGGCAAATTTGATGAA-CCCTTGTGGATTAACTCTGATTTTTAACTTTTGTTGCCG
rJMSF051A03+          TGAGAGGCAAATTTGATGAA-CCCTTGTGGATTAACTCTGATTTTTAACTTTTGTTGCCG
rJMSF003C05+          TGAGAGGCAAATTTGATGAA-CCCTTGTGGATTAACTCTGATTTTTAACTTTTGTTGCCG
rJMSF012L13+          TGAGAGGCAAATTTGATGAACCCCTTGTGGATTAACTCTGATTTTTAACTTTTGTTGCCG
rJMSF045N24+          TGAGAGGCAAATTTGATGAA-CCCTTGTGGATTAACTCTGATTTTTAACTTTTGTTGCCG
rJMSF042J16+          TGAGAGGCAAATTTGATGAA-CCCTTGTGGATTAACTCTGATTTTTAACTTTTGTTGCCG
rJMFF031A09+          TGAGAGGCAAATTTGATGAA-CCCTTGTGGATTAACTCTGATTTTTAACTTTTGTTGCCG
rJMFF044J21+          TGAGAGGCAAATTTGATGAA-CCCTTGTGGATTAACTCTGATTTTTAACTTTTGTTGCCG
JMSF050D22-           TGAGAGGCAAATTTGATGAA-CCCTTGTGGATTAACTCTGATTTTTAACTTTTGTTGCCG
                      ____________________________________________________________
consensus             TGAGAGGCAAATTTGATGAA-CCCTTGTGGATTAACTCTGATTTTTAACTTTTGTTGCCG
 
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rJMSF047J13+          CAAAAT                                                      
rJMSF051A03+          CAAAATAAAA                                                  
rJMSF003C05+          CAAAATAAAA                                                  
rJMSF012L13+          CAAAATA                                                     
rJMSF045N24+          CAAAATA                                                     
rJMSF042J16+          CAAAATAAAA                                                  
rJMFF031A09+          CAAAATAAAAACTGAATAATTATAATAA                                
rJMFF044J21+          CAAAATAAAAACTGAATAATTATAATAATAAAGAAAGAGGTTGGTTGAGCAA        
JMSF050D22-           CAAAATAAAAACTGAATAATTATAATAATAAAGAAAGAGGTTGGTTGAGCAAAAAAAAAA
                      ____________________________________________________________
consensus             CAAAATAAAAACTGAATAATTATAATAATAAAGAAAGAGGTTGGTTGAGCAAAAAAAAAA