Contig 008086:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF052D22+                                TAGGGCTTTAGGGATTTACAGTAAAATGTAAGTCTCTT
                      ____________________________________________________________
consensus                                   TAGGGCTTTAGGGATTTACAGTAAAATGTAAGTCTCTT
 
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rJMSF052D22+          ATTAGTCCATTTCTATGACTGTTTCAATCCAGGACTGTTTCAATTCACTTATAGGAGTCC
                      ____________________________________________________________
consensus             ATTAGTCCATTTCTATGACTGTTTCAATCCAGGACTGTTTCAATTCACTTATAGGAGTCC
 
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rJMSF052D22+          AGTCGTATTTCCACAGTTAGTTATTTTATTTGCAAATGATGGTTGTATACTTTCCACAGT
                      ____________________________________________________________
consensus             AGTCGTATTTCCACAGTTAGTTATTTTATTTGCAAATGATGGTTGTATACTTTCCACAGT
 
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rJMSF052D22+          TAGTTCTTTTATTTGCAAATGATGAGTACAGATCTGTTTCTTACCTCTTGATGCAAGGTT
rJMSF046A08+                                         ATCTGTTTCTTACCTCTTGATGCAAGGTT
                      ____________________________________________________________
consensus             TAGTTCTTTTATTTGCAAATGATGAGTACAGATCTGTTTCTTACCTCTTGATGCAAGGTT
 
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rJMSF052D22+          ATTTGTTTTGCCGGGCATATTTTAACAGATGAATGCCAG--AATTATGTTTTAAATATCT
rJMSF046A08+          ATTTGNTTTGCCGGGCATATTTTAACAGATGAATGCCAGGAATTATGGTTTTAAATATCT
                      ____________________________________________________________
consensus             ATTTGTTTTGCCGGGCATATTTTAACAGATGAATGCCAGGAATTTTTGTTTTAAATATCT
 
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rJMSF052D22+          G-TTTCTTAACTATTGATGCAAGGTGATTTGTTTTTCTTTAGGAACTGAATTCAATATTT
rJMSF046A08+          GTTTTCTTAACTATTGATGCAAGGTGATTTGTTTTTCTTTAGGAACTGAATTCAATATTT
JMSF045E07-             TTTCTTAACTATTGATGCAAGGTGATTTGTTTTTCTTTAGGAACTGAATTCAATATTT
                      ____________________________________________________________
consensus             GTTTTCTTAACTATTGATGCAAGGTGATTTGTTTTTCTTTAGGAACTGAATTCAATATTT
 
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rJMSF052D22+          AAAATCTTTAACTCACAACAGAAAATGGAATCACTGTTTGTTTTTCCTTTAGCTTGATTT
rJMSF046A08+          AAAATCTTTAACTCACAACAGAAAATGGAATCACTGTTTGTTTTTCCTTTAGCTTGATTT
JMSF045E07-           AAAATCTTTAACTCACAACAGAAAATGGAATCACTGTTTGTTTTTCCTTTAGCTTGATTT
                      ____________________________________________________________
consensus             AAAATCTTTAACTCACAACAGAAAATGGAATCACTGTTTGTTTTTCCTTTAGCTTGATTT
 
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rJMSF052D22+          CATCTGAAAATTAATTTGATCTGAAAATATTTAGTCAACTTAGGTTTATTTTAGATAAGA
rJMSF046A08+          CATCTGAAAATTAATTTGATCTGAAAATATTTAGTCAACTTAGGTTTATTTTAGATAAGA
JMSF045E07-           CATCTGAAAATTAATTTGATCTGAAAATATTTAGTCAACTTAGGTTTATTTTAGATAAGA
                      ____________________________________________________________
consensus             CATCTGAAAATTAATTTGATCTGAAAATATTTAGTCAACTTAGGTTTATTTTAGATAAGA
 
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rJMSF052D22+          ATTGTGTGCTTGGATGTTACAGAGAACTTGCATAAATGTTTGTTTTCCCTTTAGCTTTTG
rJMSF046A08+          ATTGTGTGCTTGGATGTTACAGAGAACTTGCATAAATGTTTGTTTTCCCTTTAGCTTTTG
JMSF045E07-           ATTGTGTGCTTGGATGTTACAGAGAACTTGCATAAATGTTTGTTTTCCCTTTAGCTTTTG
                      ____________________________________________________________
consensus             ATTGTGTGCTTGGATGTTACAGAGAACTTGCATAAATGTTTGTTTTCCCTTTAGCTTTTG
 
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rJMSF052D22+          TTTAAAAAGAAAAAATAAACAATAGGTAACATCATCTGAAACTTAATAATATTTTTGAAC
rJMSF046A08+          TTTAAAAAGAAAAAATAAACAATAGGTAACATCATCTGAAACTTAATAATATTTTTGAAC
JMSF045E07-           TTTAAAAAGAAAAAATAAACAATAGGTAACATCATCTGAAACTTAATAATATTTTTGAAC
                      ____________________________________________________________
consensus             TTTAAAAAGAAAAAATAAACAATAGGTAACATCATCTGAAACTTAATAATATTTTTGAAC
 
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rJMSF052D22+          TGTAGTTTATTTTAAATAAGAATTGGTGTAGTTTAACCTTTCATCAACTTTTTTGTATGT
rJMSF046A08+          TGTAGTTTATTTTAAATAAGAATTGGTGTAGTTTAACCTTTCATCAACTTTTTTGTATGT
JMSF045E07-           TGTAGTTTATTTTAAATAAGAATTGGTGTAGTTTAACCTTTCATCAACTTTTTTGTATGT
                      ____________________________________________________________
consensus             TGTAGTTTATTTTAAATAAGAATTGGTGTAGTTTAACCTTTCATCAACTTTTTTGTATGT
 
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rJMSF052D22+          TTAGCATTTGTTTTAGGTAAATGTAGATGACTAAATTCCACAATCTTTTATATATAAGAT
rJMSF046A08+          TTAGCATTTGTTTTAGGTAAATGTAGATGACTAAATTCCACAATCCTTTATATATAAGAT
JMSF045E07-           TTAGCATTTGTTTTAGGTAAATGTAGATGACTAAATTCCACAATCTTTTATATATAAGAT
                      ____________________________________________________________
consensus             TTAGCATTTGTTTTAGGTAAATGTAGATGACTAAATTCCACAATCTTTTATATATAAGAT
 
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rJMSF052D22+          CCAACTCTATTAGAAATCTTAAGAATACTCAAAAAAATTACAACTACAAAAGACTTGCAA
rJMSF046A08+          CCAACTCTATTAGAAATCTTAAGAATACTCAAAAAAATTACAACTACAAAAGACTTGCAA
JMSF045E07-           CCAACTCTATTAGAAATCTTAAGAATACTCAAAAAAATTACAACTACAAAAGACTTGCAA
rJMSF049L16+                                            AAATTACNAGTACAAAAGACTTGCAA
                      ____________________________________________________________
consensus             CCAACTCTATTAGAAATCTTAAGAATACTCAAAAAAATTACAACTACAAAAGACTTGCAA
 
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rJMSF052D22+          CTACAAAAGACTTGGTAAAAATACAACACCAAAATACAGTTAGATACACAATACAATATA
rJMSF046A08+          CTACAAAAGACTTGGTAAAAATACAACACCAAAATACAGTTAGATACACAATACAATATA
JMSF045E07-           CTACAAAAGACTTGGTAAAAATACAACACCAAAATACAGTTAGATACACAATACAATATA
rJMSF049L16+          CAACAAAAGNCTTGGTAAAAATACAACACCAAAATNCAGTTAGATACACAATACAATATA
                      ____________________________________________________________
consensus             CTACAAAAGACTTGGTAAAAATACAACACCAAAATACAGTTAGATACACAATACAATATA
 
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rJMSF052D22+          TGATTGTGCTTTTAGCTGATTCCTTGAAAA                              
rJMSF046A08+          TGATTGTGCTTTTAGCTGATTCCTTGAAAANCTGGTAGCCTTCATTGCTG          
JMSF045E07-           TGATTGTGCTTTTAGCTGATTCCTTGAAAA-CTGGTAGCCTTCATTGCTGGTTCTTGATA
rJMSF049L16+          TGATTGTGGTTTTAGCTGATGCCTTGAAAA-CTAATAGCCTTCATTGCNGGTTCNTGATA
                      ____________________________________________________________
consensus             TGATTGTGCTTTTAGCTGATTCCTTGAAAA-CTGGTAGCCTTCATTGCTGGTTCTTGATA
 
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JMSF045E07-           TTCAACCTGCATATAGTCACTTACACAATACAATACCAAAATACCAAAAAA         
rJMSF049L16+          TTCANCCTGCATACAGTTAGATACACAATACAATACCAAAATACAAAAAAAGAGCCAAAT
                      ____________________________________________________________
consensus             TTCAACCTGCATATAGTTAGTTACACAATACAATACCAAAATACCAAAAAAGAGCCAAAT
 
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rJMSF049L16+          TACTCANAANCAGNTAGTTCNAAAANTGATTGTCAAAAACCAATATCCAAAAACCCCAAA
JMSF050B18-                                                                      A
                      ____________________________________________________________
consensus             TACTCANAANCAGNTAGTTCNAAAANTGATTGTCAAAAACCAATATCCAAAAACCCCAAA
 
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rJMSF049L16+          ACCACACAAAGGTGGTCAATTGTNTTACACTTTATCAATTCCAAACCAACAGAGCNTCAA
JMSF050B18-           ACCACACAGAGGTGGACAATTGTCTTACAGTTTCTCAATTCCAAACCAACAGAACAGAAA
                      ____________________________________________________________
consensus             ACCACACAGAGGTGGTCAATTGTCTTACAGTTTCTCAATTCCAAACCAACAGAGCATCAA
 
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rJMSF049L16+          TATCAAATTGTTTAATTTTNCAATCAAACTTTAGGCTTCTTAACCTTGCCAGAAGAAGAG
JMSF050B18-           GATCACATTGTTTAGTTTTACAATCAAACTTTAGGCTTCTTAACCTTGCTAGAAGAACAG
                      ____________________________________________________________
consensus             TATCACATTGTTTAGTTTTACAATCAAACTTTAGGCTTCTTAACCTTGCTAGAAGAAGAG
 
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rJMSF049L16+          AACTCATCAAGGAGTGATCTCTTAACCACAGTGCAGTCCTCCAAATCAACCACATGGGCT
JMSF050B18-           AACTCATCAAGGAGTGATCTCTTACCCACATTACAGTCTTCCAAATCAGCCACA--GGCT
                      ____________________________________________________________
consensus             AACTCATCAAGGAGTGATCTCTTACCCACATTGCAGTCTTCCAAATCAGCCACATGGGCT
 
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rJMSF049L16+          CTGAGTTTGCTGAACACTAATTGGGCTGTTGACCTCATTATCACCATTGGATG       
JMSF050B18-           CTGAGTTTGCTGAACACCGGTTGGGCTGTTGACCTCATTATCACCATTGGATGCTTCCTA
                      ____________________________________________________________
consensus             CTGAGTTTGCTGAACACTGGTTGGGCTGTTGACCTCATTATCACCATTGGATGCTTCCTA
 
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JMSF050B18-           TAAATGGAAGCATTGATTTAGTTTTCAAACTTAGGCAAAAGTATAAAAACAAAAAAAAAA
                      ____________________________________________________________
consensus             TAAATGGAAGCATTGATTTAGTTTTCAAACTTAGGCAAAAGTATAAAAACAAAAAAAAAA