Contig 008078:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF049C13Sequence691008078 (2)ref|XP_009599099.1|5e-98PREDICTED: TLD domain-containing protein 1 [Nicotiana tomentosiformis]799008078 (2)ref|XP_009599099.1|5e-153PREDICTED: TLD domain-containing protein 1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF049C13-                                                             TCTATAGTG
                      ____________________________________________________________
consensus                                                                TCTATAGTG
 
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rJMSF049C13-          TAAGGGAACAATGTAGGGAAAGAAACAAATTAGGGAAGATCACTCGCTTGAATTGGCAAG
                      ____________________________________________________________
consensus             TAAGGGAACAATGTAGGGAAAGAAACAAATTAGGGAAGATCACTCGCTTGAATTGGCAAG
 
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rJMSF049C13-          CCCAACCATGTTAAGCATATGGCGATCTTCTTTAAATCTCTCAAGTATGGTTCCTTTGAT
                      ____________________________________________________________
consensus             CCCAACCATGTTAAGCATATGGCGATCTTCTTTAAATCTCTCAAGTATGGTTCCTTTGAT
 
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rJMSF049C13-          GCGATCTTGTGTTTCTTCTTGAGCTTTCTTGACGATGACTCCCCAGCACTCTATTGCTTC
                      ____________________________________________________________
consensus             GCGATCTTGTGTTTCTTCTTGAGCTTTCTTGACGATGACTCCCCAGCACTCTATTGCTTC
 
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rJMSF049C13-          TGGATATATAACATTGCTTGCTGACAAGCTGGGGCTGCCAAATGTAGTGCATGGGAAAGT
                      ____________________________________________________________
consensus             TGGATATATAACATTGCTTGCTGACAAGCTGGGGCTGCCAAATGTAGTGCATGGGAAAGT
 
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rJMSF049C13-          ATGGCCCTGATCGAAGTTGGCTAGGATGAACAACCCAAAATGATTCACTCTTCCTCCAAA
                      ____________________________________________________________
consensus             ATGGCCCTGATCGAAGTTGGCTAGGATGAACAACCCAAAATGATTCACTCTTCCTCCAAA
 
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rJMSF049C13-          ACCAATGCCATTAGGAATGCTCTCCGAACTGAAATTTACAGCACACCACTGTATATTGTG
                      ____________________________________________________________
consensus             ACCAATGCCATTAGGAATGCTCTCCGAACTGAAATTTACAGCACACCACTGTATATTGTG
 
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rJMSF049C13-          GTTTGCTCCAGTGGGGCGGAAAATTGATGCTTTTGGGTAAAGTTGGAAGATGAACGATTT
                      ____________________________________________________________
consensus             GTTTGCTCCAGTGGGGCGGAAAATTGATGCTTTTGGGTAAAGTTGGAAGATGAACGATTT
 
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rJMSF049C13-          CATATCTCCATAAAATTCTGCGTGTCTCTCCCATGGCTGAGATGCATAACCTCCGTATAT
                      ____________________________________________________________
consensus             CATATCTCCATAAAATTCTGCGTGTCTCTCCCATGGCTGAGATGCATAACCTCCGTATAT
 
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rJMSF049C13-          ATAACCTTCTTTGTCTTTGATAATTAACACAGAAGGACCTTTGTCATTCGATACGTTTCC
                      ____________________________________________________________
consensus             ATAACCTTCTTTGTCTTTGATAATTAACACAGAAGGACCTTTGTCATTCGATACGTTTCC
 
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rJMSF049C13-          CAAGAATGTATTGAAGCTTAAGCCATGAACTGTACTGTGATAAAGAAGTTTCCATTCATG
                      ____________________________________________________________
consensus             CAAGAATGTATTGAAGCTTAAGCCATGAACTGTACTGTGATAAAGAAGTTTCCATTCATG
 
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rJMSF049C13-          CAGGTCCTCTTGAGGGAGGGCACCTCCAATTAGCCAAGCATATTCCTTCCTTAACAAGAT
JMSF049C13+                                        TTAGCCAAGCATATTCCTTCCTTAACAAGAT
                      ____________________________________________________________
consensus             CAGGTCCTCTTGAGGGAGGGCACCTCCAATTAGCCAAGCATATTCCTTCCTTAACAAGAT
 
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rJMSF049C13-          TACATTAGAATTAATATTGTCCTGGTGCACTAGTCTAGGAACATCAGAACCTGGATCAGA
JMSF049C13+           TACATTAGAATTAATATTGTCCTGGTGCACTAGTCTAGGAACATCAGAACCTGGATCAGA
                      ____________________________________________________________
consensus             TACATTAGAATTAATATTGTCCTGGTGCACTAGTCTAGGAACATCAGAACCTGGATCAGA
 
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rJMSF049C13-          TGGCATCAACAAACTTCCAAGGAACTTCCTTACAGATGGGAGAAGTGCGCACCACTTTCT
JMSF049C13+           TGGCATCAACAAACTTCCAAGGAACTTCCTTACAGATGGGAGAAGTGCGCACCACTTTCT
                      ____________________________________________________________
consensus             TGGCATCAACAAACTTCCAAGGAACTTCCTTACAGATGGGAGAAGTGCGCACCACTTTCT
 
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rJMSF049C13-          AAACTCTTCA                                                  
JMSF049C13+           AAACTCTTCATATGACATACAACTCTCAGCCGGTTTTTGACTATCCGTTGTGAAATTTGC
                      ____________________________________________________________
consensus             AAACTCTTCATATGACATACAACTCTCAGCCGGTTTTTGACTATCCGTTGTGAAATTTGC
 
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JMSF049C13+           AGCATTGAGGAGTATGCCAATAACTTCCGAATGTGAACCTGGTCCATGTTGTTGAGAAAA
                      ____________________________________________________________
consensus             AGCATTGAGGAGTATGCCAATAACTTCCGAATGTGAACCTGGTCCATGTTGTTGAGAAAA
 
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JMSF049C13+           TACACTATCTAGCATTGCAGTTAAAACAGCTTCAAGATCAGACCTTCCAACGGTGCCATC
                      ____________________________________________________________
consensus             TACACTATCTAGCATTGCAGTTAAAACAGCTTCAAGATCAGACCTTCCAACGGTGCCATC
 
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JMSF049C13+           AGCAGAGACATCTAATAGTTGATAGATGAACTCTTCAATCTCATCTTTCGTTCCTTTTTC
                      ____________________________________________________________
consensus             AGCAGAGACATCTAATAGTTGATAGATGAACTCTTCAATCTCATCTTTCGTTCCTTTTTC
 
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JMSF049C13+           ATAAGTTGCTTTAGCAATAACAAGATCTTCAAAGGTAAGCTTTTGATCCTTGCGATTCTG
                      ____________________________________________________________
consensus             ATAAGTTGCTTTAGCAATAACAAGATCTTCAAAGGTAAGCTTTTGATCCTTGCGATTCTG
 
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JMSF049C13+           AGAGGCCAAGTCGAACAATCTATCCCCCAGCGGCCCTTCAATTCCAACGTGATTCTTGAA
                      ____________________________________________________________
consensus             AGAGGCCAAGTCGAACAATCTATCCCCCAGCGGCCCTTCAATTCCAACGTGATTCTTGAA
 
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JMSF049C13+           AACAGAAGGGGAGATGTGCTGGGCATTTCTTTCAGATTTCTCGGCGAGTGAAAGGAACAA
                      ____________________________________________________________
consensus             AACAGAAGGGGAGATGTGCTGGGCATTTCTTTCAGATTTCTCGGCGAGTGAAAGGAACAA
 
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JMSF049C13+           TGAGTAAAGGTCTTCTAGTTCCTTCTCAGTGAACGCTCTTTTGGCGGAAGCAAAGCGAGG
                      ____________________________________________________________
consensus             TGAGTAAAGGTCTTCTAGTTCCTTCTCAGTGAACGCTCTTTTGGCGGAAGCAAAGCGAGG
 
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JMSF049C13+           ATTGATAGAAGACGACGGAGAATTGCCCATCTCTCCGGGAGAGAGAATAGCAGTGAAGCC
                      ____________________________________________________________
consensus             ATTGATAGAAGACGACGGAGAATTGCCCATCTCTCCGGGAGAGAGAATAGCAGTGAAGCC