Contig 008068:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-                ATTGAGCATACAATTTTTATTTTAGTTTTTCTAATTTACATCCATAATATAACG
                      ____________________________________________________________
consensus                   ATTGAGCATACAATTTTTATTTTAGTTTTTCTAATTTACATCCATAATATAACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          CATAATAAAAATAAAAAGATACTCCGTAGTATAGTCGTATTCATACACAGACGGCGTGCC
                      ____________________________________________________________
consensus             CATAATAAAAATAAAAAGATACTCCGTAGTATAGTCGTATTCATACACAGACGGCGTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          GCGTGCGTGACTGCCCCCCTAGTCGTGATCTTCAATCAAGATACTGCTTCAGGAACTTAC
JMSF048C17+                                     GATCTTCAATCAAGATACTGCTTCAGGAACTTAC
                      ____________________________________________________________
consensus             GCGTGCGTGACTGCCCCCCTAGTCGTGATCTTCAATCAAGATACTGCTTCAGGAACTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          GAATTCGCTTTCCAAAACCGTAATTCTTCTCCATTTTCTCGCGATCGAAGCGATGATAGT
JMFN029K24+                                                         GAAGCGATGATAGT
JMSF048C17+           GAATTCGCTTTCCAAAACCGTAATTCTTCTCCATTTTCTCGCGATCGAAGCGATGATAGT
                      ____________________________________________________________
consensus             GAATTCGCTTTCCAAAACCGTAATTCTTCTCCATTTTCTCGCGATCGAAGCGATGATAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          GTTTCGACGCATACTTTGCGAGCTTCTCTTCACCGTCGCCGCGGTGACGGTGGTGGCCGT
JMFN029K24+           GTTTCGACGCATACTTTGCGAGCTTCTCTTCACCGTCGCCGCGGTGACGGTGGTGGCCGT
JMSF048C17+           GTTTCGACGCATACTTTGCGAGCTTCTCTTCACCGTCGCCGCGGTGACGGTGGTGGCCGT
                      ____________________________________________________________
consensus             GTTTCGACGCATACTTTGCGAGCTTCTCTTCACCGTCGCCGCGGTGACGGTGGTGGCCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          GGTGGTGAAGGAACGGGATCCACTCCGGCGGAACTTGGCGCACGTCGCCGTGGATCGTGA
JMFN029K24+           GGTGGTGAAGGAACGGGATCCACTCCGGCGGAACTTGGCGCACGTCGCCGTGGATCGTGA
JMSF048C17+           GGTGGTGAAGGAACGGGATCCACTCCGGCGGAACTTGGCGCACGTCGCCGTGGATCGTGA
                      ____________________________________________________________
consensus             GGTGGTGAAGGAACGGGATCCACTCCGGCGGAACTTGGCGCACGTCGCCGTGGATCGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          CGTCACCGAGGTTTTTAGTTTCCGGAGAAGAGAGAATCATATCATCCCCGTAGGGGATCT
JMFN029K24+           CGTCACCGAGGTTTTTAGTTTCCGGAGAAGAGAGAATCATATCATCCCCGTAGGGGATCT
JMSF048C17+           CGTCACCGAGGTTTTTAGTTTCCGGAGAAGAGAGAATCATATCATCCCCGTAGGGGATCT
                      ____________________________________________________________
consensus             CGTCACCGAGGTTTTTAGTTTCCGGAGAAGAGAGAATCATATCATCCCCGTAGGGGATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          GGCCGCCCGATCTCATAACCAGCCTTTGCTTGTGGCCGTTACCAAAGCGGTGGCGGCATC
JMFN029K24+           GGCCGCCCGATCTCATAACCAGCCTTTGCTTGTGGCCGTTACCAAAGCGGTGGCGGCATC
JMSF048C17+           GGCCGCCCGATCTCATAACCAGCCTTTGCTTGTGGCCGTTACCAAAGCGGTGGCGGCATC
                      ____________________________________________________________
consensus             GGCCGCCCGATCTCATAACCAGCCTTTGCTTGTGGCCGTTACCAAAGCGGTGGCGGCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          GAAGGAAGGGGAGCGCAGATCGGAGGCGGAAGCGACGGTTGACCGGACGGAATCTGACTA
JMFN029K24+           GAAGGAAGGGGAGCGCAGATCGGAGGCGGAAGCGACGGTTGACCGGACGGAATCTGACTA
JMSF048C17+           GAAGGAAGGGGAGCGCAGATCGGAGGCGGAAGCGACGGTTGACCGGACGGAATCTGACTA
                      ____________________________________________________________
consensus             GAAGGAAGGGGAGCGCAGATCGGAGGCGGAAGCGACGGTTGACCGGACGGAATCTGACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          GATGTAGCGGCATGACCTCGGCGGCGACCACGGCTTTCGTCTCTGTCTCAATAGCATCGG
JMFN029K24+           GATGTAGCGGCATGACCTCGGCGGCGACCACGGCTTTCGTCTCTGTCTCAATAGCATCGG
JMSF048C17+           GATGTAGCGGCATGACCTCGGCGGCGACCACGGCTTTCGTCTCTGTCTCAATAGCATCGG
                      ____________________________________________________________
consensus             GATGTAGCGGCATGACCTCGGCGGCGACCACGGCTTTCGTCTCTGTCTCAATAGCATCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          TTTCCTCGTGATTTGACTCGCTAGGGAGGCGAATAGCGTCACCGGCGTCCGATTTGGTAA
JMFN029K24+           TTTCCTCGTGATTTGACTCGCTAGGGAGGCGAATAGCGTCACCGGCGTCCGATTTGGTAA
JMSF048C17+           TTTCCTCGTGATTTGACTCGCTAGGGAGGCGAATAGCGTCACCGGCGTCCGATTTGGTAA
                      ____________________________________________________________
consensus             TTTCCTCGTGATTTGACTCGCTAGGGAGGCGAATAGCGTCACCGGCGTCCGATTTGGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          CTGACTCGCTAGGGAGGCGAATAGCATCACCGGCATCCGATTTGGTAACGGAGTCTGACA
JMFN029K24+           CTGACTCGCTAGGGAGGCGAATAGCATCACCGGCATCCGATTTGGTAACGGAGTCTGACA
JMSF048C17+           CTGACTCGCTAGGGAGGCGAATAGCATCACCGGCATCCGATTTGGTAACGGAGTCTGACA
                      ____________________________________________________________
consensus             CTGACTCGCTAGGGAGGCGAATAGCATCACCGGCATCCGATTTGGTAACGGAGTCTGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048C17-          GTTGGTTAACTGTGACGTCATTTTCCGGCTTG                            
JMFN029K24+           GTTGGTTAACTGTGACGTCATTTTCCGGCTTGCTTAACGGAGAACGAGCAACAGAGATGG
JMSF048C17+           GTTGGTTAACTGTGACGTCATTTTCCGGCTTGCTTAACGGAGAACGAGCAACAGAGATGG
                      ____________________________________________________________
consensus             GTTGGTTAACTGTGACGTCATTTTCCGGCTTGCTTAACGGAGAACGAGCAACAGAGATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN029K24+           TGAAAAGCAAAAAGAGAACTGCAACGGAAAGCCTAGCCATGGTTCAAG            
JMSF048C17+           TGAAAAGCAAAAAGAGAACTGCAACGGAAAGCCTAGCCATGGTTCAAGGCAGGAACAGCC
                      ____________________________________________________________
consensus             TGAAAAGCAAAAAGAGAACTGCAACGGAAAGCCTAGCCATGGTTCAAGGCAGGAACAGCC