Contig 008066:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS030E03Sequence611008066 (4)ref|XP_009627804.1|4e-41PREDICTED: histidine--tRNA ligase-like [Nicotiana tomentosiformis]
JMFS066H09Sequence642008066 (4)ref|XP_009627804.1|4e-41PREDICTED: histidine--tRNA ligase-like [Nicotiana tomentosiformis]
JMFS072B12Sequence635008066 (4)ref|XP_009627804.1|1e-26PREDICTED: histidine--tRNA ligase-like [Nicotiana tomentosiformis]
JMSF047N17Sequence643008066 (4)ref|XP_009783426.1|4e-21PREDICTED: histidine--tRNA ligase [Nicotiana sylvestris]709013075 (2)emb|CBI31247.3|4e-110unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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JMFS030E03+               TCAGAATCCATGCCAGAATCCAAAATAAGCTGGGCCCGGCGGGAACTGATTTCTCC
JMFS066H09+                                        TAAGCTGGGCCCGGCGGGAACTGATTTCTCC
                      ____________________________________________________________
consensus                 TCAGAATCCATGCCAGAATCCAAAATAAGCTGGGCCCGGCGGGAACTGATTTCTCC
 
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JMFS030E03+           CACACGCAACAGTGCTACAGCCAAATCCAACAAGGTGGCGGACGAAACCTTGGCAGCCGC
JMFS066H09+           CACACGCAACAGTGCTACAGCCAAATCCAACAAGGTGGCGGACGAAACCTTGGCAGCCGC
                      ____________________________________________________________
consensus             CACACGCAACAGTGCTACAGCCAAATCCAACAAGGTGGCGGACGAAACCTTGGCAGCCGC
 
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JMFS030E03+           GGAGGAGCTAGCTCTGAAGGCAGAATTGAGCTGAGTCCTAGTCCTGGAGTGCAGGAGGCG
JMFS066H09+           GGAGGAGCTAGCTCTGAAGGCAGAATTGAGCTGAGTCCTAGTCCTGGAGTGCAGGAGGCG
                      ____________________________________________________________
consensus             GGAGGAGCTAGCTCTGAAGGCAGAATTGAGCTGAGTCCTAGTCCTGGAGTGCAGGAGGCG
 
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JMFS030E03+           GCAAATCTCCTTGAAGTGACCGTGAACCTCAGGAATATCATAAACTGAAGGATCAAGCGG
JMFS066H09+           GCAAATCTCCTTGAAGTGACCGTGAACCTCAGGAATATCATAAACTGAAGGATCAAGCGG
JMFS072B12+                             ACCGTGAACCTCAGGAATATCATAAACTGAAGGATCAAGCGG
                      ____________________________________________________________
consensus             GCAAATCTCCTTGAAGTGACCGTGAACCTCAGGAATATCATAAACTGAAGGATCAAGCGG
 
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JMFS030E03+           ACTTCCGCCCACCATTTTAGAGCCGTTGAGGAAGACCTTAATGGCAGCAGCCACCGAAAC
JMFS066H09+           ACTTCCGCCCACCATTTTAGAGCCGTTGAGGAAGACCTTAATGGCAGCAGCCACCGAAAC
JMFS072B12+           ACTTCCGCCCACCATTTTAGAGCCGTTGAGGAAGACCTTAATGGCAGCAGCCACCGAAAC
JMSF047N17+                            TAGAGCCGTTGAGGAAGACCTTAATGGCAGCAGCCACCGAAAC
                      ____________________________________________________________
consensus             ACTTCCGCCCACCATTTTAGAGCCGTTGAGGAAGACCTTAATGGCAGCAGCCACCGAAAC
 
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JMFS030E03+           GTCATCCTTGGCAGTGGAACCATCCCCTGAGTCGATCAAATCGAAAGCGGATACATCGGC
JMFS066H09+           GTCATCCTTGGCAGTGGAACCATCCCCTGAGTCGATCAAATCGAAAGCGGATACATCGGC
JMFS072B12+           GTCATCCTTGGCAGTGGAACCATCCCCTGAGTCGATCAAATCGAAAGCGGATACATCGGC
JMSF047N17+           GTCATCCTTGGCAGTGGAACCATCCCCTGAGTCGATCAAATCGAAAGCGGATACATCGGC
                      ____________________________________________________________
consensus             GTCATCCTTGGCAGTGGAACCATCCCCTGAGTCGATCAAATCGAAAGCGGATACATCGGC
 
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JMFS030E03+           CTTCAAGGCCTCGCAGGACAGAGCAGCAACAGCATCGGAAATCAATGACAAAGCCGAACA
JMFS066H09+           CTTCAAGGCCTCGCAGGACAGAGCAGCAACAGCATCGGAAATCAATGACAAAGCCGAACA
JMFS072B12+           CTTCAAGGCCTCGCAGGACAGAGCAGCAACAGCATCGGAAATCAATGACAAAGCCGAACA
JMSF047N17+           CTTCAAGGCCTCGCAGGACAGAGCAGCAACAGCATCGGAAATCAATGACAAAGCCGAACA
                      ____________________________________________________________
consensus             CTTCAAGGCCTCGCAGGACAGAGCAGCAACAGCATCGGAAATCAATGACAAAGCCGAACA
 
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JMFS030E03+           GCGGTGGTCGGCGAGGGCGGAAACACCAACTAGTACGGACAATGGAAAATCGAGGGAAGG
JMFS066H09+           GCGGTGGTCGGCGAGGGCGGAAACACCAACTAGTACGGACAATGGAAAATCGAGGGAAGG
JMFS072B12+           GCGGTGGTCGGCGAGGGCGGAAACACCAACTAGTACGGACAATGGAAAATCGAGGGAAGG
JMSF047N17+           GCGGTGGTCGGCGAGGGCGGAAACACCAACTAGTACGGACAATGGAAAATCGAGGGAAGG
                      ____________________________________________________________
consensus             GCGGTGGTCGGCGAGGGCGGAAACACCAACTAGTACGGACAATGGAAAATCGAGGGAAGG
 
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JMFS030E03+           GAGAACCGCCGGGGCAATACCGTCAATAGCAATATTAGCATCACTACTACTTTCACTATT
JMFS066H09+           GAGAACCGCCGGGGCAATACCGTCAATAGCAATATTAGCATCACTACTACTTTCACTATT
JMFS072B12+           GAGAACCGCCGGGGCAATACCGTCAATAGCAATATTAGCATCACTACTACTTTCACTATT
JMSF047N17+           GAGAACCGCCGGGGCAATACCGTCAATAGCAATATTAGCATCACTACTACTTTCACTATT
                      ____________________________________________________________
consensus             GAGAACCGCCGGGGCAATACCGTCAATAGCAATATTAGCATCACTACTACTTTCACTATT
 
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JMFS030E03+           GAGGATCTCGGAGAGCTGACCTGCAGCCGCAACAGATGAAGAGGAAGTAAGCAATAGCTT
JMFS066H09+           GAGGATCTCGGAGAGCTGACCTGCAGCCGCAACAGATGAAGAGGAAGTAAGCAATAGCTT
JMFS072B12+           GAGGATCTCGGAGAGCTGACCTGCAGCCGCAACAGATGAAGAGGAAGTAAGCAATAGCTT
JMSF047N17+           GAGGATCTCGGAGAGCTGACCTGCAGCCGCAACAGATGAAGAGGAAGTAAGCAATAGCTT
                      ____________________________________________________________
consensus             GAGGATCTCGGAGAGCTGACCTGCAGCCGCAACAGATGAAGAGGAAGTAAGCAATAGCTT
 
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JMFS030E03+           GTTCAGAAGTACTAA                                             
JMFS066H09+           GTTCAGAAGTACTAATGTTGAAGCTCGGACCTCAGTGGCCGATAACAAGTCGCCGGGAAT
JMFS072B12+           GTTCAGAAGTACTAATGTTGAAGCTCGGACCTCAGTGGCCGATAACAAGTCGCCGGGAAT
JMSF047N17+           GTTCAGAAGTACTAATGTTGAAGCTCGGACCTCAGTGGCCGATAACAAGTCGCCGGGAAT
                      ____________________________________________________________
consensus             GTTCAGAAGTACTAATGTTGAAGCTCGGACCTCAGTGGCCGATAACAAGTCGCCGGGAAT
 
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JMFS066H09+           CTGGAAATGGA                                                 
JMFS072B12+           CTGGAAATGGAATTTGGCGGCGGCGGGTGACGACGTTTTAGACTTAGCAGCTACGGAAGG
JMSF047N17+           CTGGAAATGGAATTTGGCGGCGGCGGGTGACGACGTTTTAGACTTAGCAGCTACGGAAGG
                      ____________________________________________________________
consensus             CTGGAAATGGAATTTGGCGGCGGCGGGTGACGACGTTTTAGACTTAGCAGCTACGGAAGG
 
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JMFS072B12+           AGCAGAAGAATCGATATTCACACGGGCAAGACC-ACATGAGATCTCAACAACGGAGGATG
JMSF047N17+           AGCAGAAGAATCGATATTCACACGGGCAAGACCAACATGAGATCTCAACAACGGAGGATG
                      ____________________________________________________________
consensus             AGCAGAAGAATCGATATTCACACGGGCAAGACCAACATGAGATCTCAACAACGGAGGATG
 
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JMFS072B12+           AGGATAGGGATGAACCTTTCCCGCCTACTGTTACGACGCGCTTCTCCATCGCCG      
JMSF047N17+           AGGATAGGGATGAACCTTTCCCGCCTACTGTTACGACGCGCTTCTCCATCGCCGCACTAG
                      ____________________________________________________________
consensus             AGGATAGGGATGAACCTTTCCCGCCTACTGTTACGACGCGCTTCTCCATCGCCGCACTAG
 
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JMSF047N17+           GGTTGGAGTTTAGCTTAATGCTCTCTCGCCCCCCAGAGAATCTGAAAATGGAAAAAACTC
                      ____________________________________________________________
consensus             GGTTGGAGTTTAGCTTAATGCTCTCTCGCCCCCCAGAGAATCTGAAAATGGAAAAAACTC