Contig 008064:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF045L15Sequence801008064 (3)emb|CDP10631.1|1e-89unnamed protein product [Coffea canephora]763008064 (3)emb|CDP10631.1|5e-90unnamed protein product [Coffea canephora]
JMSF047I17Sequence666008064 (3)ref|XP_008781842.1|266PREDICTED: uncharacterized protein LOC103701536 [Phoenix dactylifera]693015168ref|XP_009587466.1|8e-09PREDICTED: putative RING-H2 finger protein ATL71 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF045L15-                                               TATTTTGTTACATCTCTCAAGCT
                      ____________________________________________________________
consensus                                                  TATTTTGTTACATCTCTCAAGCT
 
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rJMSF045L15-          TATTTCTAGCTTCCTTTTGGAAGTTGAGAAGCTAGAAAAAACAAGTAAACTTCACCTAAC
                      ____________________________________________________________
consensus             TATTTCTAGCTTCCTTTTGGAAGTTGAGAAGCTAGAAAAAACAAGTAAACTTCACCTAAC
 
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rJMSF045L15-          TCACTTCACCAAATTCCATTAGCCTGCATATAATGTTGATCACCACACAGTACAGTCCTC
JMSF045L15+               TTCACCAAATTCCATTAGCCTGCATATAATGTTGATCACCACACAGTACAGTCCTC
                      ____________________________________________________________
consensus             TCACTTCACCAAATTCCATTAGCCTGCATATAATGTTGATCACCACACAGTACAGTCCTC
 
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rJMSF045L15-          CTAGCATATACAATTATTTGAAACATCAATACACATAACCTGTGACAACCGAAACGTTTT
JMSF045L15+           CTAGCATATACAATTATTTGAAACATCAATACACATAACCTGTGACAACCGAAACGTTTT
                      ____________________________________________________________
consensus             CTAGCATATACAATTATTTGAAACATCAATACACATAACCTGTGACAACCGAAACGTTTT
 
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rJMSF045L15-          ATGGTCCTTTACCAACATCCTTTTCTTCTTGAGATTTATTAGCTTCTTCCTTCTTCTCCA
JMSF045L15+           ATGGTCCTTTACCAACATCCTTTTCTTCTTGAGATTTATTAGCTTCTTCCTTCTTCTCCA
JMSF047I17+                                                                 TCTCCA
                      ____________________________________________________________
consensus             ATGGTCCTTTACCAACATCCTTTTCTTCTTGAGATTTATTAGCTTCTTCCTTCTTCTCCA
 
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rJMSF045L15-          TGACTTGTTGAATACCTTCTTGATATCCTTCAATGAAGCTTTTGAGGGCATCTCTGTATG
JMSF045L15+           TGACTTGTTGAATACCTTCTTGATATCCTTCAATGAAGCTTTTGAGGGCATCTCTGTATG
JMSF047I17+           TGACTTGTTGAATACCTTCTTGATATCCTTCAATGAAGCTTTTGAGGGCATCTCTGTATG
                      ____________________________________________________________
consensus             TGACTTGTTGAATACCTTCTTGATATCCTTCAATGAAGCTTTTGAGGGCATCTCTGTATG
 
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rJMSF045L15-          CTGACGCTCTAGTCATATAAACCCGCTGCAGGGCAGGCCTAAGAGTTTCCATTCCACCTC
JMSF045L15+           CTGACGCTCTAGTCATATAAACCCGCTGCAGGGCAGGCCTAAGAGTTTCCATTCCACCTC
JMSF047I17+           CTGACGCTCTAGTCATATAAACCCGCTGCAGGGCAGGCCTAAGAGTTTCCATTCCACCTC
                      ____________________________________________________________
consensus             CTGACGCTCTAGTCATATAAACCCGCTGCAGGGCAGGCCTAAGAGTTTCCATTCCACCTC
 
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rJMSF045L15-          TTGCAGCCACAGCTAGGTCCTCCAATGTTGAGGGTTCCTTCTCCTTAGTTGTACCATTTT
JMSF045L15+           TTGCAGCCACAGCTAGGTCCTCCAATGTTGAGGGTTCCTTCTCCTTAGTTGTACCATTTT
JMSF047I17+           TTGCAGCCACAGCTAGGTCCTCCAATGTTGAGGGTTCCTTCTCCTTAGTTGTACCATTTT
                      ____________________________________________________________
consensus             TTGCAGCCACAGCTAGGTCCTCCAATGTTGAGGGTTCCTTCTCCTTAGTTGTACCATTTT
 
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rJMSF045L15-          CTTCATGAGGCATGTCTTCATCATATTGCTCCTTTTTGTAGTCATTAGGTCGGAGTTCAG
JMSF045L15+           CTTCATGAGGCATGTCTTCATCATATTGCTCCTTTTTGTAGTCATTAGGTCGGAGTTCAG
JMSF047I17+           CTTCATGAGGCATGTCTTCATCATATTGCTCCTTTTTGTAGTCATTAGGTCGGAGTTCAG
                      ____________________________________________________________
consensus             CTTCATGAGGCATGTCTTCATCATATTGCTCCTTTTTGTAGTCATTAGGTCGGAGTTCAG
 
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rJMSF045L15-          GGCCAATGTCCCTTACCCAGCTTGCAGCATAAAGCCTTGAAGCTTCCTTCAACACAAGGT
JMSF045L15+           GGCCAATGTCCCTTACCCAGCTTGCAGCATAAAGCCTTGAAGCTTCCTTCAACACAAGGT
JMSF047I17+           GGCCAATGTCCCTTACCCAGCTTGCAGCATAAAGCCTTGAAGCTTCCTTCAACACAAGGT
                      ____________________________________________________________
consensus             GGCCAATGTCCCTTACCCAGCTTGCAGCATAAAGCCTTGAAGCTTCCTTCAACACAAGGT
 
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rJMSF045L15-          AACGCTCCTTCCAAGTTAGTTTCCCGCGCTTTTTGATATGAGGGGGGTCAGGTAAAGATG
JMSF045L15+           AACGCTCCTTCCAAGTTAGTTTCCCGCGCTTTTTGATATGAGGGGGGTCAGGTAAAGATG
JMSF047I17+           AACGCTCCTTCCAAGTTAGTTTCCCGCGCTTTTTGATATGAGGGGGGTCAGGTAAAGATG
                      ____________________________________________________________
consensus             AACGCTCCTTCCAAGTTAGTTTCCCGCGCTTTTTGATATGAGGGGGGTCAGGTAAAGATG
 
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rJMSF045L15-          AAGGGAATGCAATTTCCTTCAGGTCATATCGGACATAATCATATACTTTCCGGCAAACCA
JMSF045L15+           AAGGGAATGCAATTTCCTTCAGGTCATATCGGACATAATCATATACTTTCCGGCAAACCA
JMSF047I17+           AAGGGAATGCAATTTCCTTCAGGTCATATCGGACATAATCATATACTTTCCGGCAAACCA
                      ____________________________________________________________
consensus             AAGGGAATGCAATTTCCTTCAGGTCATATCGGACATAATCATATACTTTCCGGCAAACCA
 
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rJMSF045L15-          CCTTTAGCTTCATTTCTACTCTCGGGTTGCCTCTACATGCCGTTTGTAAACAAGAAATTG
JMSF045L15+           CCTTTAGCTTCATTTCTACTCTCGGGTTGCCTCTACATGCCGTTTGTAAACAAGAAATTG
JMSF047I17+           CCTTTAGCTTCATTTCTACTCTCGGGTTGCCTCTACATGCCGTTTGTAAACAAGAAATTG
                      ____________________________________________________________
consensus             CCTTTAGCTTCATTTCTACTCTCGGGTTGCCTCTACATGCCGTTTGTAAACAAGAAATTG
 
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rJMSF045L15-          ATACACACGGGCTATTCTTT                                        
JMSF045L15+           ATACACACGGGCTATTCTTTCAGGAAGAAGCCACAAAGAAACGAAAACCCAACAAGAAAA
JMSF047I17+           ATACACACGGGCTATTCTTTCAGGAAGAAGCCACAAAGAAACGAAAACCCAACAAGAAAA
                      ____________________________________________________________
consensus             ATACACACGGGCTATTCTTTCAGGAAGAAGCCACAAAGAAACGAAAACCCAACAAGAAAA
 
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JMSF045L15+           AAGGGCACTTGATGAATTTACCGGCGAAATGGAACAGTCGACCGCGGAGGAGAAGACGAC
JMSF047I17+           AAGGGCACTTGATGAATTTACCGGCGAAATGGAACAGTCGACCGCGGAGGAGAAGACGAC
                      ____________________________________________________________
consensus             AAGGGCACTTGATGAATTTACCGGCGAAATGGAACAGTCGACCGCGGAGGAGAAGACGAC
 
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JMSF045L15+           TAACAAGATGCGAGAAGGCAAAGC                                    
JMSF047I17+           TAACAAGATGCGAGAAGGCAAAGCTGCAGAGTGACCGAGTGATGGGTAGGAAATAGAATA
                      ____________________________________________________________
consensus             TAACAAGATGCGAGAAGGCAAAGCTGCAGAGTGACCGAGTGATGGGTAGGAAATAGAATA