Contig 008059:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS008D12Sequence586008059 (4)ref|XP_011075330.1|3e-91PREDICTED: pentatricopeptide repeat-containing protein At2g41720 [Sesamum indic
JMFS028F01Sequence652008059 (4)ref|XP_011075330.1|8e-107PREDICTED: pentatricopeptide repeat-containing protein At2g41720 [Sesamum indic
JMFS147E10Sequence615008059 (4)ref|XP_011075330.1|1e-97PREDICTED: pentatricopeptide repeat-containing protein At2g41720 [Sesamum indic
JMSF046L18Sequence752008059 (4)ref|XP_011075330.1|4e-124PREDICTED: pentatricopeptide repeat-containing protein At2g41720 [Sesamum indic786023636ref|XP_010319184.1|2e-38PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X3 [So

Alignment

This contig is upended


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JMSF046L18+                                       TTCCACTAGACCCACATGCATTGATCAAGTTG
                      ____________________________________________________________
consensus                                         TTCCACTAGACCCACATGCATTGATCAAGTTG
 
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JMFS028F01+                                            CGGAGCATGTCTTCCATGATATTTTTC
JMSF046L18+           TTGTAGGTTGACCTACTTGGGGGAATCGCTGCACGGAGCATGTCTTCCATGATATTTTTC
                      ____________________________________________________________
consensus             TTGTAGGTTGACCTACTTGGGGGAATCGCTGCACGGAGCATGTCTTCCATGATATTTTTC
 
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JMFS028F01+           GCCCAACGCCACTGGCCAGCTCGACCATGTGCATTGATGAGAGCATTATAGGTTTCCGCA
JMFS008D12+                                             TGATGAGAGCATTATAGGTTTCCGCA
JMFS147E10+                         GCCAGCTCGACCATGTGCATTGATGAGAGCATTATAGGTTTCCGCA
JMSF046L18+           GCCCAACGCCACTGGCCAGCTCGACCATGTGCATTGATGAGAGCATTATAGGTTTCCGCA
                      ____________________________________________________________
consensus             GCCCAACGCCACTGGCCAGCTCGACCATGTGCATTGATGAGAGCATTATAGGTTTCCGCA
 
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JMFS028F01+           TCAGGTTGACACCTCCATTTTTGCATTTCAAAAAACAAGCCACGAGCTTGGTCAATCTGA
JMFS008D12+           TCAGGTTGACACCTCCATTTTTGCATTTCAAAAAACAAGCCACGAGCTTGGTCAATCTGA
JMFS147E10+           TCAGGTTGACACCTCCATTTTTGCATTTCAAAAAACAAGCCACGAGCTTGGTCAATCTGA
JMSF046L18+           TCAGGTTGACACCTCCATTTTTGCATTTCAAAAAACAAGCCACGAGCTTGGTCAATCTGA
                      ____________________________________________________________
consensus             TCAGGTTGACACCTCCATTTTTGCATTTCAAAAAACAAGCCACGAGCTTGGTCAATCTGA
 
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JMFS028F01+           TTATGCCTTGCATGCAACCTGATCATCATGTTGTAAATATCACTGCGTGCACAATAGTTC
JMFS008D12+           TTATGCCTTGCATGCAACCTGATCATCATGTTGTAAATATCACTGCGTGCACAATAGTTC
JMFS147E10+           TTATGCCTTGCATGCAACCTGATCATCATGTTGTAAATATCACTGCGTGCACAATAGTTC
JMSF046L18+           TTATGCCTTGCATGCAACCTGATCATCATGTTGTAAATATCACTGCGTGCACAATAGTTC
                      ____________________________________________________________
consensus             TTATGCCTTGCATGCAACCTGATCATCATGTTGTAAATATCACTGCGTGCACAATAGTTC
 
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JMFS028F01+           TTTTGGTTCTTCATCCAATTGAAAACATGTACACTGTGCTCTATTGAACCGAGCTGTGTT
JMFS008D12+           TTTTGGTTCTTCATCCAATTGAAAACATGTACACTGTGCTCTATTGAACCGAGCTGTGTT
JMFS147E10+           TTTTGGTTCTTCATCCAATTGAAAACATGTACACTGTGCTCTATTGAACCGAGCTGTGTT
JMSF046L18+           TTTTGGTTCTTCATCCAATTGAAAACATGTACACTGTGCTCTATTGAACCGAGCTGTGTT
                      ____________________________________________________________
consensus             TTTTGGTTCTTCATCCAATTGAAAACATGTACACTGTGCTCTATTGAACCGAGCTGTGTT
 
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JMFS028F01+           ATTTCCTTTATAAGAACTGGAAAATTCTTTCGGGCAAATCGACCGGCCCACCGGTTTAAG
JMFS008D12+           ATTTCCTTTATAAGAACTGGAAAATTCTTTCGGGCAAATCGACCGGCCCACCGGTTTAAG
JMFS147E10+           ATTTCCTTTATAAGAACTGGAAAATTCTTTCGGGCAAATCGACCGGCCCACCGGTTTAAG
JMSF046L18+           ATTTCCTTTATAAGAACTGGAAAATTCTTTCGGGCAAATCGACCGGCCCACCGGTTTAAG
                      ____________________________________________________________
consensus             ATTTCCTTTATAAGAACTGGAAAATTCTTTCGGGCAAATCGACCGGCCCACCGGTTTAAG
 
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JMFS028F01+           AGGCCATCAATATCTTCCCAGTGATTGAGCTTCATGATATTGGCTACCACCTCAGAGAGT
JMFS008D12+           AGGCCATCAATATCTTCCCAGTGATTGAGCTTCATGATATTGGCTACCACCTCAGAGAGT
JMFS147E10+           AGGCCATCAATATCTTCCCAGTGATTGAGCTTCATGATATTGGCTACCACCTCAGAGAGT
JMSF046L18+           AGGCCATCAATATCTTCCCAGTGATTGAGCTTCATGATATTGGCTACCACCTCAGAGAGT
                      ____________________________________________________________
consensus             AGGCCATCAATATCTTCCCAGTGATTGAGCTTCATGATATTGGCTACCACCTCAGAGAGT
 
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JMFS028F01+           GGCCAATCCTTCTGGAACCGGTCTCCGTCGACTCGCAAAAGGTTCCGTTTCGGCAAGTCG
JMFS008D12+           GGCCAATCCTTATGGAACCGGTCTCCGTCGACTCGCAAAAGGTTCCGTTTCGGCAAGTCG
JMFS147E10+           GGCCAATCCTTCTGGAACCGGTCTCCGTCGACTCGCAAAAGGTTCCGTTTCGGCAAGTCG
JMSF046L18+           GGCCAATCCTTCTGGAACCGGTCTCCGTCGACTCGCAAAAGGTTCCGTTTCGGCAAGTCG
                      ____________________________________________________________
consensus             GGCCAATCCTTCTGGAACCGGTCTCCGTCGACTCGCAAAAGGTTCCGTTTCGGCAAGTCG
 
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JMFS028F01+           GATTTCCTGAGCCCGTCGATTCGTACGGAAACACTGTGGGTCCCTGTGTCGTAGTCCACT
JMFS008D12+           GATTTCCTGAGCCCGTCGATTCGTACGGAAACACTGTGGGTCCCTGTGTCGTAGTCCACT
JMFS147E10+           GATTTCCTGAGCCCGTCGATTCGTACGGAAACACTGTGGGTCCCTGTGTCGTAGTCCACT
JMSF046L18+           GATTTCCTGAGCCCGTCGATTCGTACGGAAACACTGTGGGTCCCTGTGTCGTAGTCCACT
                      ____________________________________________________________
consensus             GATTTCCTGAGCCCGTCGATTCGTACGGAAACACTGTGGGTCCCTGTGTCGTAGTCCACT
 
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JMFS028F01+           GCAGCTTGCTTCTTCTCCACGAATGCGTCCTCATTCTTGGACTTTCTGCAGTAGATTACA
JMFS008D12+           GCAGCTTGCTTCTTCTCCACGAATGCGTCCTCATTCTTGGACTTTCTGCAGTAGATTACA
JMFS147E10+           GCAGCTTGCTTCTTCTCCACGAATGCGTCCTCATTCTTGGACTTTCTGCAGTAGATTACA
JMSF046L18+           GCAGCTTGCTTCTTCTCCACGAATGCGTCCTCATTCTTGGACTTTCTGCAGTAGATTACA
                      ____________________________________________________________
consensus             GCAGCTTGCTTCTTCTCCACGAATGCGTCCTCATTCTTGGACTTTCTGCAGTAGATTACA
 
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JMFS028F01+           GACGTTCCAGGTCCGGTTTGAAATGGCGTGAGTTTAGGTTTGCACTGTGATGCCTTTGAG
JMFS008D12+           GACGTTCCAGGTCCGGTTTGAAATGGCGTGAGTTTAGGTTTGCACTGTGATGCCTTTGAG
JMFS147E10+           GACGTTCCAGGTCCGGTTTGAAATGGCGTGAGTTTAGGTTTGCACTGTGATGCCTTTGAG
JMSF046L18+           GACGTTCCAGGTCCGGTTTGAAATGGCGTGAGTTTAGGTTTGCACTGTGATGCCTTTGAG
                      ____________________________________________________________
consensus             GACGTTCCAGGTCCGGTTTGAAATGGCGTGAGTTTAGGTTTGCACTGTGATGCCTTTGAG
 
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JMFS028F01+           TCGAGCC                                                     
JMFS008D12+           TCGAGCC                                                     
JMFS147E10+           TCGAGCC                                                     
JMSF046L18+           TCGAGCCTGAAAATGTCTAAGCTGTTGGGGAAGGTAGCCATGGAGATAAAGATAAACCCC
                      ____________________________________________________________
consensus             TCGAGCCTGAAAATGTCTAAGCTGTTGGGGAAGGTAGCCATGGAGATAAAGATAAACCCC