clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF001M17 | Sequence | 514 | 008055 (5) | ref|XP_006343041.1| | 1e-26 | PREDICTED: NADP-dependent malic enzyme, chloroplastic-like [Solanum tuberosum] | 756 | 005816 (6) | gb|AAB41026.1| | 2e-106 | NADP-malic enzyme, partial [Flaveria linearis] |
JMFF004B16 | Sequence | 593 | 008055 (5) | ref|XP_006343041.1| | 1e-57 | PREDICTED: NADP-dependent malic enzyme, chloroplastic-like [Solanum tuberosum] | 720 | 005816 (6) | gb|AAB19243.1| | 6e-91 | NADP-malic enzyme, partial [Flaveria trinervia] |
JMFS122B04 | Sequence | 414 | 008055 (5) | ref|XP_006359476.1| | 2e-12 | PREDICTED: NADP-dependent malic enzyme, chloroplastic-like [Solanum tuberosum] | |||||
JMFS124E01 | Sequence | 567 | 008055 (5) | ref|XP_006343041.1| | 4e-43 | PREDICTED: NADP-dependent malic enzyme, chloroplastic-like [Solanum tuberosum] | |||||
JMSF046G19 | Sequence | 674 | 008055 (5) | ref|XP_006343041.1| | 2e-61 | PREDICTED: NADP-dependent malic enzyme, chloroplastic-like [Solanum tuberosum] | 661 | 005816 (6) | gb|AAB19243.1| | 3e-78 | NADP-malic enzyme, partial [Flaveria trinervia] |
This contig is upended
. : . : . : . : . : . :
JMSF046G19+ AGCTCATGATTGAC
____________________________________________________________
consensus AGCTCATGATTGAC
. : . : . : . : . : . :
JMFF004B16+ AGGAAGAAGACCACGTAAGTAGTGGGCATCCCTTTCCTTCTGATTAAAGGC
JMSF046G19+ AACCACGGGAGGAAGAAGACCACGTAAGTAGTGGGCATCCCTTTCCTTNTGATTAAAGGC
____________________________________________________________
consensus AACCACGGGAGGAAGAAGACCACGTAAGTAGTGGGCATCCCTTTCCTTCTGATTAAAGGC
. : . : . : . : . : . :
JMFF004B16+ AAGACCTTTATTGTAGTGCGGATCACGCAACAATGTGTATCCACTCGCAACAGAGACAGT
JMFS124E01+ GTAGTGCGGATCACGCAACAATGTGTATCCACTCGCAACAGAGACAGT
JMSF046G19+ AAGACCTTTATTGTAGTGCGGATCACGCAACAATGTGTATCCACTCGCAACAGAGACAGT
____________________________________________________________
consensus AAGACCTTTATTGTAGTGCGGATCACGCAACAATGTGTATCCACTCGCAACAGAGACAGT
. : . : . : . : . : . :
JMFF004B16+ CCAAGGGGTAATCACTTGATCCTCGGTGGCAGTATCCTCGCCGTAGAAATCCCCAACTCC
JMFS124E01+ CCAAGGGGTAATCACTTGATCCTCGGTGGCAGTATCCTCGCCGTAGAAATCCCCAACTCC
JMFF001M17+ GTGGCAGTATCCTCGCCGTAGAAATCCCCAACTCC
JMSF046G19+ CCAAGGGGTAATCACTTGATCCTCGGTGGCAGTATCCTCGCCGTAGAAATCCCCAACTCC
____________________________________________________________
consensus CCAAGGGGTAATCACTTGATCCTCGGTGGCAGTATCCTCGCCGTAGAAATCCCCAACTCC
. : . : . : . : . : . :
JMFF004B16+ GCCGGCGACGGTGGATTTGGCCTCCTTCTCCACAACGGGAACTGACTCCGTCACCTCCTT
JMFS124E01+ GCCGGCGACGGTGGATTTGGCCTCCTTCTCCACAACGGGAACTGACTCCGTCACCTCCTT
JMFF001M17+ GCCGGCGACGGTGGATTTGGCCTCCTTCTCCACAACGGGAACTGACTCCGTCACCTCCTT
JMFS122B04+ T
JMSF046G19+ GCCGGCGACGGTGGATTTGGCCTCCTTCTCCACAACGGGAACTGACTCCGTCACCTCCTT
____________________________________________________________
consensus GCCGGCGACGGTGGATTTGGCCTCCTTCTCCACAACGGGAACTGACTCCGTCACCTCCTT
. : . : . : . : . : . :
JMFF004B16+ CAGAGCACTCTCCATCACGATGCTCGCATTCCGGTCTCCGGGTCTGCCGTTGGAGCTGAC
JMFS124E01+ CAGAGCACTCTCCATCACGATGCTCGCATTCCGGTCTCCGGGTCTGCCGTTGGAGCTGAC
JMFF001M17+ CAGAGCACTCTCCATCACGATGCTCGCATTCCGGTCTCCGGGTCTGCCGTTGGAGCTGAC
JMFS122B04+ CAGAGCACTCTCCATCACGATGCTCGCATTCCGGTCTCCGGGTCTGCCGTTGGAGCTGAC
JMSF046G19+ CAGAGCACTCTCCATCACGATGCTCGCATTCCGGTCTCCGGGTCTGCCGTTGGAGCTGAC
____________________________________________________________
consensus CAGAGCACTCTCCATCACGATGCTCGCATTCCGGTCTCCGGGTCTGCCGTTGGAGCTGAC
. : . : . : . : . : . :
JMFF004B16+ GGCGGCTACAACCTTCGGAGCTGAAAACCTCCGCTGCGACTGTGACTGAGTCAAGCATTT
JMFS124E01+ GGCGGCTACAACCTTCGGAGCTGAAAACCTCCGCTGCGACTGTGACTGAGTCAAGCATTT
JMFF001M17+ GGCGGCTACAACCTTCGGAGCTGAAAACCTCCGCTGCGACTGTGACTGAGTCAAGCATTT
JMFS122B04+ GGCGGCTACAACCTTGGGAGCTGAAAACCTCCGCTGCGACTGTGACTGAGTCAAGCATTT
JMSF046G19+ GGCGGCTACAACCTTCGGAGCTGAAAACCTCCGCTGCGACTGTGACTGAGTCAAGCATTT
____________________________________________________________
consensus GGCGGCTACAACCTTCGGAGCTGAAAACCTCCGCTGCGACTGTGACTGAGTCAAGCATTT
. : . : . : . : . : . :
JMFF004B16+ CGAAACCCCAGACAGGGAGTTGTTCATAAAAGCGGTCCCGCTTAAGGAAATCATGTTTAT
JMFS124E01+ CGAAACCCCAGACAGGGAGTTGTTCATAAAAGCGGTCCCGCTTAAGGAAATCATGTTTAT
JMFF001M17+ CGAAACCCCAGACAGGGAGTTGTTCATAAAAGCGGTCCCGCTTAAGGAAATCATGTTTAT
JMFS122B04+ CGAAACCCCAGACAGGGAGTTGTTCATAAAAGCGGTCCCGCTTAAGGAAATCATGTTTAT
JMSF046G19+ CGAAACCCCAGACAGGGAGTTGTTCATAAAAGCGGTCCCGCTTAAGGAAATCATGTTTAT
____________________________________________________________
consensus CGAAACCCCAGACAGGGAGTTGTTCATAAAAGCGGTCCCGCTTAAGGAAATCATGTTTAT
. : . : . : . : . : . :
JMFF004B16+ CTTTAGCAGAAGACGAAGAAGGCCGAGTGTTTCACCGAGAAATAGAGGAAAAAGAGAAGC
JMFS124E01+ CTTTAGCAGAAGACGAAGAAGGCCGAGTGTTTCACCGAGAAATAGAGGAAAAAGAGAAGC
JMFF001M17+ CTTTAGCAGAAGACGAAGAAGGCCGAGTGTTTCACCGAGAAATAGAGGAAAAAGAGAAGC
JMFS122B04+ CTTTAGCAGAAGACGAAGAAGGCCGAGTGTTTCACCGAGAAATAGAGGAAAAAGAGAAGC
JMSF046G19+ CTTTAGCAGAAGACGAAGAAGGCCGAGTGTTTCACCGAGAAATAGAGGAAAAAGAGAAGC
____________________________________________________________
consensus CTTTAGCAGAAGACGAAGAAGGCCGAGTGTTTCACCGAGAAATAGAGGAAAAAGAGAAGC
. : . : . : . : . : . :
JMFF004B16+ GAAGGAAGAAAGGAAAAGAGGGGCTATGCTCCTTTAATGTGTGTGTATATAC--CTCTCT
JMFS124E01+ GAAGGAAGAAAGGAAAAGAGGGGCTATGCTCCTTTAATGTGTGTGTATATACCTCTCTCT
JMFF001M17+ GAAGGAAGAAAGGAAAAGAGGGGCTATGCTCCTTTAATGTGTGTGTATATACCTCTCTCT
JMFS122B04+ GAAGGAAGAAAGGAAAAGAGGGGCTATGCTCCTTTAATGTGTGTGTATATACCTCTCTCT
JMSF046G19+ GAAGGAAGAAAGGAAAAGAGGGGCTATGCTCCTTTAATGTGTGTGTATATACCTCTCTCT
____________________________________________________________
consensus GAAGGAAGAAAGGAAAAGAGGGGCTATGCTCCTTTAATGTGTGTGTATATACCTCTCTCT
. : . : . : . : . : . :
JMFF004B16+ CTCTCCTCTCTCCTCTCTCTCCTCTCTCCCCTACTCTTTCTCTCTCCCTCTCGCCTACTC
JMFS124E01+ CTCTCCTCTCTCCTCTCTCTCCTCTCTCCCCTACTCTTTCTCTCTCCCTCTCGCCTACTC
JMFF001M17+ CTCTCCTCTCTCCTCTCTCTCCTCTCTCCCCTACTCTTTCTCTCTCCCTCTCGCCTACTC
JMFS122B04+ CTCTCCTCTCTCCTCTCTCTCCTCTCTCCCCTACTCTTTCTCTCTCCCTCTCGCCTACTC
JMSF046G19+ CTCTCCTCTCTCCTCTCTCTCCTCTCTCCCCTACTCTTTCTCTCTCCCTCTCGCCTACTC
____________________________________________________________
consensus CTCTCCTCTCTCCTCTCTCTCCTCTCTCCCCTACTCTTTCTCTCTCCCTCTCGCCTACTC
. : . : . : . : . : . :
JMFF004B16+ TTCC
JMFS124E01+ TTCCTCTCTCTTTCCTACCGGTCTCCCTTTTAGTACTGC
JMFF001M17+ TTCCTCTCTCTTTCCTACCGGTCTCCCTTTTAGTACTGCTTATGTCTCTGAAC
JMFS122B04+ TTCCTCTCTCTTTCCTACCGGTCTCCCTTTTAGTACTGCTTATGTCTCTGAAC
JMSF046G19+ TTCCTCTCTCTTTCCTACCGGTCTCCCTTTTAGTACTGCTTATGTCTCTGAACTGGCACC
____________________________________________________________
consensus TTCCTCTCTCTTTCCTACCGGTCTCCCTTTTAGTACTGCTTATGTCTCTGAACTGGCACC