Contig 008051:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028C08Sequence577008051 (3)ref|XP_009775369.1|2e-67PREDICTED: ornithine aminotransferase, mitochondrial [Nicotiana sylvestris]688011084 (3)ref|XP_009775369.1|4e-74PREDICTED: ornithine aminotransferase, mitochondrial [Nicotiana sylvestris]
JMFF031I14Sequence522008051 (3)ref|XP_009775369.1|6e-76PREDICTED: ornithine aminotransferase, mitochondrial [Nicotiana sylvestris]658011084 (3)ref|XP_009775369.1|5e-73PREDICTED: ornithine aminotransferase, mitochondrial [Nicotiana sylvestris]
JMSF045P23Sequence729008051 (3)ref|XP_009775369.1|2e-95PREDICTED: ornithine aminotransferase, mitochondrial [Nicotiana sylvestris]728011084 (3)ref|XP_009775369.1|4e-105PREDICTED: ornithine aminotransferase, mitochondrial [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF045P23+                                                              GTTGTCACA
                      ____________________________________________________________
consensus                                                                GTTGTCACA
 
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JMSF045P23+           GCTCATGGATATAGCAGCCAGTGTACGTCCATGGAAGCAACCACAACACGAGACAATTAT
                      ____________________________________________________________
consensus             GCTCATGGATATAGCAGCCAGTGTACGTCCATGGAAGCAACCACAACACGAGACAATTAT
 
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JMFF028C08+                                                         GACAACTTCAAAGC
JMFF031I14+               TCATCTTTCGGTATTCCTTTCTTAATGTATCCCCATTTCTTCGACAACTTCAAAGC
JMSF045P23+           AGCCTCATCTTTCGGTATTCCTTTCTTAATGTATCCCCATTTCTTCGACAACTTCAAAGC
                      ____________________________________________________________
consensus             AGCCTCATCTTTCGGTATTCCTTTCTTAATGTATCCCCATTTCTTCGACAACTTCAAAGC
 
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JMFF028C08+           TGTCTCGACTCCTTCTGCACCAGTATTCATTGGTAGTGCCATGTCATATCCAAACATGCT
JMFF031I14+           TGTCTCGACTCCTTCTGCACCAGTATTCATTGGTAGTGCCATGTCATATCCAAACATGCT
JMSF045P23+           TGTCTCGACTCCTTCTGCACCAGTATTCATTGGTAGTGCCATGTCATATCCAAACATGCT
                      ____________________________________________________________
consensus             TGTCTCGACTCCTTCTGCACCAGTATTCATTGGTAGTGCCATGTCATATCCAAACATGCT
 
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JMFF028C08+           GGTAAGGCGTTCGGCAAATACTGGAAATTTGTCATTATAAAATGCTCTTGAACTAAGAGT
JMFF031I14+           GGTAAGGCGTTCGGCAAATACTGGAAATTTGTCATTATAAAATGCTCTTGAACTAAGAGT
JMSF045P23+           GGTAAGGCGTTCGGCAAATACTGGAAATTTGTCATTATAAAATGCTCTTGAACTAAGAGT
                      ____________________________________________________________
consensus             GGTAAGGCGTTCGGCAAATACTGGAAATTTGTCATTATAAAATGCTCTTGAACTAAGAGT
 
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JMFF028C08+           GAGATTTTCAGCCTGTTCCACTAGTGCTTTCATGATCCTGGGATGACAATGCCCCTGATT
JMFF031I14+           GAGATTTTCAGCCTGTTCCACTAGTGCTTTCATGATCCTGGGATGACAATGCCCCTGATT
JMSF045P23+           GAGATTTTCAGCCTGTTCCACTAGTGCTTTCATGATCCTGGGATGACAATGCCCCTGATT
                      ____________________________________________________________
consensus             GAGATTTTCAGCCTGTTCCACTAGTGCTTTCATGATCCTGGGATGACAATGCCCCTGATT
 
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JMFF028C08+           GACAGCAGAATAAGCTGAGAGGAAGTCCAGATACACGTTCCCTTCTGGATCCCAGACAGA
JMFF031I14+           GACAGCAGAATAAGCTGAGAGGAAGTCCAGATACACGTTCCCTTCTGGATCCCAGACAGA
JMSF045P23+           GACAGCAGAATAAGCTGAGAGGAAGTCCAGATACACGTTCCCTTCTGGATCCCAGACAGA
                      ____________________________________________________________
consensus             GACAGCAGAATAAGCTGAGAGGAAGTCCAGATACACGTTCCCTTCTGGATCCCAGACAGA
 
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JMFF028C08+           TGATCCTTTTGCCCGAGAAAAAACAATGGGAATTGGATGGTAATTGTGAGCACTGCACTC
JMFF031I14+           TGATCCTTTTGCCCGAGAAAAAACAATGGGAATTGGATGGTAATTGTGAGCACTGCACTC
JMSF045P23+           TGATCCTTTTGCCCGAGAAAAAACAATGGGAATTGGATGGTAATTGTGAGCACTGCACTC
                      ____________________________________________________________
consensus             TGATCCTTTTGCCCGAGAAAAAACAATGGGAATTGGATGGTAATTGTGAGCACTGCACTC
 
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JMFF028C08+           AGACTCCAAGCTAATGAGGTGTTGAGAAGAGGAAGCTGAATTTGGTTGAGGTTGGGCGCT
JMFF031I14+           AGACTCCAAGCTAATGAGGTGTTGAGAAGAGGAAGCTGAATTTGGTTGAGGTTGGGCGCT
JMSF045P23+           AGACTCCAAGCTAATGAGGTGTTGAGAAGAGGAAGCTGAATTTGGTTGAGGTTGGGCGCT
                      ____________________________________________________________
consensus             AGACTCCAAGCTAATGAGGTGTTGAGAAGAGGAAGCTGAATTTGGTTGAGGTTGGGCGCT
 
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JMFF028C08+           ACAGAAATTCCGAACGCTTCCTAATCTGCTCAAGACAGACTGCAAAGGCCTCCTTGTCGC
JMFF031I14+           ACAGAAATTCCGAACGCTTCCTAATCTGCTCAAGACAGACTGCAAAGGCCTCCTTGTCGC
JMSF045P23+           ACAGAAATTCCGAACGCTTCCTAATCTGCTCAAGACAGACTGCAAAGGCCTCCTTGTCGC
                      ____________________________________________________________
consensus             ACAGAAATTCCGAACGCTTCCTAATCTGCTCAAGACAGACTGCAAAGGCCTCCTTGTCGC
 
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JMFF028C08+           CATGGTTATCAAGAAAGTAACAATCTTGAATCGCAGCAACTTTATTTCTTCTCTTCTTTA
JMFF031I14+           CATGGTTATCAAGAAAGTAACAATCTTGAATCGCAGCAACTTTATT              
JMSF045P23+           CATGGTTATCAAGAAAGTAACAATCTTGAATCGCAGCAACTTTATTTCTTCTCTTCTTTA
                      ____________________________________________________________
consensus             CATGGTTATCAAGAAAGTAACAATCTTGAATCGCAGCAACTTTATTTCTTCTCTTCTTTA
 
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JMFF028C08+           TCTGTTCTTCTTCACATACGGAGTTGATGATGAGATTGTTATACGTGGGGAGCGGAGCTT
JMSF045P23+           TCTGTTCTTCTTCACATACGGAGTTGATGATGAGATTGTTATACGTGGGGAGCGGAGCTT
                      ____________________________________________________________
consensus             TCTGTTCTTCTTCACATACGGAGTTGATGATGAGATTGTTATACGTGGGGAGCGGAGCTT
 
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JMFF028C08+           GGTGACCAAGATACGCAACTCCC                                     
JMSF045P23+           GGTGACCAAGATACGCAACTCCCAAAATGGCTCTTTTTCCAAAGAAATTGAATTACTATC
                      ____________________________________________________________
consensus             GGTGACCAAGATACGCAACTCCCAAAATGGCTCTTTTTCCAAAGAAATTGAATTACTATC