Contig 008045:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-                          AAATTACAGCCAAAGGAAAAGTTTAACAAAGAAATTTTCACAAA
rJMSF045C09-                          AAATTACAGCCAAAGGAAAAGTTTAACAAAGAAATTTTCACAAA
                      ____________________________________________________________
consensus                             AAATTACAGCCAAAGGAAAAGTTTAACAAAGAAATTTTCACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-          ATTACACAGNTAAAAATAAGCTTAAGCTTGAAGAGGATGTGCAGATATGGAAAGGGAGGA
rJMSF045C09-          ATTACACAG-TAAAAATAAGCTTAAGCTTGAAGAGGATGTGCAGATATGGAAAGGGAGGA
                      ____________________________________________________________
consensus             ATTACACAGNTAAAAATAAGCTTAAGCTTGAAGAGGATGTGCAGATATGGAAAGGGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-          GGAGGACTTCAATCTTTCCTTTCCTTTCCTTGACTCTCTGTCCCACAAAATTGAATGATA
rJMSF045C09-          GGAGGACTTCAATCTTTCCTTTCCTTTCCTTGACTCTCTGTCCCACAAAATTGAATGATA
                      ____________________________________________________________
consensus             GGAGGACTTCAATCTTTCCTTTCCTTTCCTTGACTCTCTGTCCCACAAAATTGAATGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-          TATTCAGGTCTGTCACATCTTTCTTCCCAGAAATGTCTGCTCTAACAGTGTCCATGTGTT
rJMSF045C09-          TATTCAGGTCTGTCACATCTTTCTTCCCAGAAATGTCTGCTCTAACAGTGTCCATGTGTT
                      ____________________________________________________________
consensus             TATTCAGGTCTGTCACATCTTTCTTCCCAGAAATGTCTGCTCTAACAGTGTCCATGTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-          GGGAGCTAGTAACCATCAAGAAGGCAAATTGAACTCCACCGGATTGGATGGTGGAGGTTG
rJMSF045C09-          GGGAGCTAGTAACCATCAAGAAGGCAAATTGAACTCCACCGGATTGGATGGTGGAGGTTG
JMSF045J02+           GGGAGNTAGTAACCATCAAGAAGGCAAATTGAACTCCACCGGATTGGATGGTGGAGGTTG
JMSF045C09+           GGGAGCTAGTAACCATCAAGAAGGCAAATTGAACTCCACCGGATTGGATGGTGGAGGTTG
                      ____________________________________________________________
consensus             GGGAGCTAGTAACCATCAAGAAGGCAAATTGAACTCCACCGGATTGGATGGTGGAGGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-          ACAGAATAGTTCGACCTGGAGGTAAACTCTCCTCTCCACATGAAGACACGCATGCGAAAT
rJMSF045C09-          ACAGAATAGTTCGACCTGGAGGTAAACTCTCCTCTCCACATGAAGACACGCATGCGAAAT
JMSF045J02+           ACAGAATAGTTCGACCTGGAGGTAAACTCTCCTCTCCACATGAAGACACGCATGCGAAAT
JMSF045C09+           ACAGAATAGTTCGACCTGGAGGTAAACTCTCCTCTCCACATGAAGACACGCATGCGAAAT
                      ____________________________________________________________
consensus             ACAGAATAGTTCGACCTGGAGGTAAACTCTCCTCTCCACATGAAGACACGCATGCGAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-          TGGGGGAATCCATATGCTCCAGCAACCATCATGCCCAACCGTGCTTGATAATTCATCCCT
rJMSF045C09-          TGGGGGAATCCATATGCTCCAGCAACCATCATGCCCAACCGTGCTTGATAATTCATCCCT
JMSF045J02+           TGGGGGAATCCATATGCTCCAGCAACCATCATGCCCAACCGTGCTTGATAATTCATCCCT
JMSF045C09+           TGGGGGAATCCATATGCTCCAGCAACCATCATGCCCAACCGTGCTTGATAATTCATCCCT
                      ____________________________________________________________
consensus             TGGGGGAATCCATATGCTCCAGCAACCATCATGCCCAACCGTGCTTGATAATTCATCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-          ACAAGCCGGCTTAAAGCATATCTCCCAAGAAATGATTCTATCATTCTCTGCTAGCCATGC
rJMSF045C09-          ACAAGCCGGCTTAAAGCATATCTCCCAAGAAATGATTCTATCATTCTCTGCTAGCCATGC
JMSF045J02+           ACAAGCCGGCTTAAAGCATATCTCCCAAGAAATGATTCTATCATTCTCTGCTAGCCATGC
JMSF045C09+           ACAAGCCGGCTTAAAGCATATCTCCCAAGAAATGATTCTATCATTCTCTGCTAGCCATGC
                      ____________________________________________________________
consensus             ACAAGCCGGCTTAAAGCATATCTCCCAAGAAATGATTCTATCATTCTCTGCTAGCCATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-          ATTCCTAATCTTCAAGAGAAGCTCTGAGAGGATCAATAAATTCACTAAACTCTATTTCAT
rJMSF045C09-          ATTCCTAATCTTCAAGAGAAGCTCTGAGAGGATCAATAAATTCACTAAACTCTATTTCAT
JMSF045J02+           ATTCCTAATCTTCAAGAGAAGCTCTGAGAGGATCAATAAATTCACTAAACTCTATTTCAT
JMSF045C09+           ATTCCTAATCTTCAAGAGAAGCTCTGAGAGGATCAATAAATTCACTAAACTCTATTTCAT
                      ____________________________________________________________
consensus             ATTCCTAATCTTCAAGAGAAGCTCTGAGAGGATCAATAAATTCACTAAACTCTATTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-          CAAGAGCATTGAAAACATCTTCTGCATTCATCGTTTGCCTCTTAGACTCCATGCATACAT
rJMSF045C09-          CAAGAGCATTGAAAACATCTTCTGCATTCATCGTTTGCCTCTTAGACTCCATGCATACAT
JMSF045J02+           CAAGAGCATTGAAAACATCTTCTGCATTCATCGTTTGCCTCTTAGACTCCATGCATACAT
JMSF045C09+           CAAGAGCATTGAAAACATCTTCTGCATTCATCGTTTGCCTCTTAGACTCCATGCATACAT
                      ____________________________________________________________
consensus             CAAGAGCATTGAAAACATCTTCTGCATTCATCGTTTGCCTCTTAGACTCCATGCATACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-          CATTTGCAACAGTAGAGAGGTAATGGATGAAGATGCGTGCGCTCTCGGAGAAGGCTTGAT
rJMSF045C09-          CATTTGCAACAGTAGAGAGGTAATGGATGAAGATGCGTGCGCTCTCGGAGAAGGCTTGAT
JMSF045J02+           CATTTGCAACAGTAGAGAGGTAATGGATGAAGATGCGTGCGCTCTCGGAGAAGGCTTGAT
JMSF045C09+           CATTTGCAACAGTAGAGAGGTAATGGATGAAGATGCGTGCGCTCTCGGAGAAGGCTTGAT
                      ____________________________________________________________
consensus             CATTTGCAACAGTAGAGAGGTAATGGATGAAGATGCGTGCGCTCTCGGAGAAGGCTTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045J02-          GAGCCTCGCGGAGAAGTGACAT                                      
rJMSF045C09-          GAGCCTCGCGGAGAAGTGACATTTCGTCGTCTCTCTCCACCACAGCACCAGATCTGAGCA
JMSF045J02+           GAGCCTCGCGGAGAAGTGACATTTCGTCGTCTCTCTCCACCACAGCACCAGATCTGAGCA
JMSF045C09+           GAGCCTCGCGGAGAAGTGACATTTCGTCGTCTCTCTCCACCACAGCACCAGATCTGAGCA
                      ____________________________________________________________
consensus             GAGCCTCGCGGAGAAGTGACATTTCGTCGTCTCTCTCCACCACAGCACCAGATCTGAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045C09-          CTAACCGGATCTGGAGACTATTGTTAAGCTCAATGACAACATGGTTGCCCTTTCCTGTGA
JMSF045J02+           CTAACCGGATCTGGAGACTATTGTTAAGCTCAATGACAACATGGTTGCCCTTTCCTGTGA
JMSF045C09+           CTAACCGGATCTGGAGACTATTGTTAAGCTCAATGACAACATGGTTGCCCTTTCCTGTGA
                      ____________________________________________________________
consensus             CTAACCGGATCTGGAGACTATTGTTAAGCTCAATGACAACATGGTTGCCCTTTCCTGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045C09-          GCAG                                                        
JMSF045J02+           GCAGCGACGATCGATCAGGTGAGCAGACGGCGAGGGCGGTCGGCGTCTTGGCGACAGCAG
JMSF045C09+           GCAGCGACGATCGATCAGGTGAGCAGACGGCGAGGGCGGTCGGCGTCTTGGCGACAGCAG
                      ____________________________________________________________
consensus             GCAGCGACGATCGATCAGGTGAGCAGACGGCGAGGGCGGTCGGCGTCTTGGCGACAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045J02+           AGGAGACACGGCGTCTTGGCGGGCAGTCGGCTGAGGCTCACGACGGAGGCTCAGATCGTG
JMSF045C09+           AGGAGACACGGCGTCTTGGCGGGCAGTCGGCTGAGGCTCACGACGGAGGCTCAGATCGTG
                      ____________________________________________________________
consensus             AGGAGACACGGCGTCTTGGCGGGCAGTCGGCTGAGGCTCACGACGGAGGCTCAGATCGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045J02+           GACAGTCTTGGTCGGCGGAGTAGAATCAGATCGGCGGAGGCAATTTGAGAGAATCAGATT
JMSF045C09+           GACAGTCTTGGTCGGCGGAGTAGAATCAGATCGGCGGAGGCAATTTGAGAGAATCAGATT
                      ____________________________________________________________
consensus             GACAGTCTTGGTCGGCGGAGTAGAATCAGATCGGCGGAGGCAATTTGAGAGAATCAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045J02+           GGTGGTCGTGGTCTACTAGGGCTCACGGTGGCAATTTGGGGCAATTTGAGAGAATTCGC 
JMSF045C09+           GGTGGTCGTGGTCTACTAGGGCTCACGGTGGCAATTTGGGGCAATTTGAGAGAATTCGCC
                      ____________________________________________________________
consensus             GGTGGTCGTGGTCTACTAGGGCTCACGGTGGCAATTTGGGGCAATTTGAGAGAATTCGCC