Contig 008043:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026H04Sequence520008043 (5)745001468 (3)ref|XP_009615190.1|2e-71PREDICTED: ankyrin repeat protein SKIP35 [Nicotiana tomentosiformis] ref|XP_0096
JMFS010F08Sequence591008043 (5)
JMFS141E12Sequence626008043 (5)
JMSF040K11Sequence398008043 (5)864001468 (3)ref|XP_009615190.1|1e-108PREDICTED: ankyrin repeat protein SKIP35 [Nicotiana tomentosiformis] ref|XP_0096
JMSF044L18Sequence745008043 (5)739001468 (3)ref|XP_009760838.1|7e-29PREDICTED: ankyrin repeat protein SKIP35-like [Nicotiana sylvestris] ref|XP_0097

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044L18+                                             CGTTTTCCGAGTTAAAAACTACAATT
                      ____________________________________________________________
consensus                                               CGTTTTCCGAGTTAAAAACTACAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141E12+                                      TCACCTATTTCCACATCCATTTCGGAACAATGA
JMSF044L18+           TGATCCGTCAGACTCGAGACACCGGTCTCACCTATTTCCACATCCATTTCGGAACAATGA
                      ____________________________________________________________
consensus             TGATCCGTCAGACTCGAGACACCGGTCTCACCTATTTCCACATCCATTTCGGAACAATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141E12+           GACTCTACCATATTGACACCACCCCCCAAATTCAGGTCTTGGGTCTCCACCACAAATGGT
JMFS010F08+                                     CAAATTCAGGTCTTGGGTCTCCACCACAAATGGT
JMSF044L18+           GACTCTACCATATTGACACCACCCCCCAAATTCAGGTCTTGGGTCTCCACCACAAATGGT
                      ____________________________________________________________
consensus             GACTCTACCATATTGACACCACCCCCCAAATTCAGGTCTTGGGTCTCCACCACAAATGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141E12+           CTCTTCTCTTCTTTCATTGTACACCAAAAACTAGCCAAAGATCCCAACAATTAATTCTTC
JMFS010F08+           CTCTTCTCTTCTTTCATTGTACACCAAAAACTAGCCAAAGATCCCAACAATTAATTCTTC
JMFF026H04+                                                                   CTTC
JMSF044L18+           CTCTTCTCTTCTTTCATTGTACACCAAAAACTAGCCAAAGATCCCAACAATTAATTCTTC
                      ____________________________________________________________
consensus             CTCTTCTCTTCTTTCATTGTACACCAAAAACTAGCCAAAGATCCCAACAATTAATTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141E12+           CAAACACCACTTATAATCGTAGCTAATTGCAAACCCTCAATCCATAATCCATACAAATCA
JMFS010F08+           CAAACACCACTTATAATCGTAGCTAATTGCAAACCCTCAATCCATAATCCATACAAATCA
JMFF026H04+           CAAACACCACTTATAATCGTAGCTAATTGCAAACCCTCAATCCATAATCCATACAAATCA
JMSF044L18+           CAAACACCACTTATAATCGTAGCTAATTGCAAACCCTCAATCCATAATCCATACAAATCA
                      ____________________________________________________________
consensus             CAAACACCACTTATAATCGTAGCTAATTGCAAACCCTCAATCCATAATCCATACAAATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141E12+           AAACTTTCCTTCAGAACCTCAGGAATATATGACTAGAAACAAAACCAAATTCGGAGATCA
JMFS010F08+           AAACTTTCCTTCAGAACCTCAGGAATATATGACTAGAAACAAAACCAAATTCGGAGATCA
JMFF026H04+           AAACTTTCCTTCAGAACCTCAGGAATATATGACTAGAAACAAAACCAAATTCGGAGATCA
JMSF044L18+           AAACTTTCCTTCAGAACCTCAGGAATATATGACTAGAAACAAAACCAAATTCGGAGATCA
                      ____________________________________________________________
consensus             AAACTTTCCTTCAGAACCTCAGGAATATATGACTAGAAACAAAACCAAATTCGGAGATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141E12+           GATACAATCTATCAGCCAAGCTCAAACACAACCTAGATTTTTTCTAGATGAAGGAAACTA
JMFS010F08+           GATACAATCTATCAGCCAAGCTCAAACACAACCTAGATTTTTTCTAGATGAAGGAAACTA
JMFF026H04+           GATACAATCTATCAGCCAAGCTCAAACAGAACCTAGATTTTTTCTAGATGAAGGAAACTA
JMSF040K11+                        AGCCAAGCTCAAACACAACCTAGATTTNTTCTAGATGANGGAANNTN
JMSF044L18+           GATACAATCTATCAGCCAAGCTCAAACACAACCTAGATTTTTTCTAGATGAAGGAAANTA
                      ____________________________________________________________
consensus             GATACAATCTATCAGCCAAGCTCAAACACAACCTAGATTTTTTCTAGATGAAGGAAACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141E12+           GAACAGGGAACAAAGAGCAAAAAACCCTAGCCCAATACAAACATATACGCTTGGATACAT
JMFS010F08+           GAACAGGGAACAAAGAGCAAAAAACCCTAGCCCAATACAAACATATACGCTTGGATACAT
JMFF026H04+           GAACAGGGAACAAAGAGCAAAAAACCCTAGCCCAATACAAACATATACGCTTGGATACAT
JMSF040K11+           GAACAGGGAACAAAGAGCAAAAAACCCTAGNCCAATACAAACATATACGCTCGGATACAT
JMSF044L18+           GAACAGGGAACAAAGAGCAAAAAACCCTAGCCCAATACAAACATATACGCTTGGATACAT
                      ____________________________________________________________
consensus             GAACAGGGAACAAAGAGCAAAAAACCCTAGCCCAATACAAACATATACGCTTGGATACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141E12+           ATATAGATGGACAAAAGGCTCAGGTACGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
JMFS010F08+           ATATAGATGGACAAAAGGCTCAGGTACGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
JMFF026H04+           ATATAGATGGACAAAAGGCTCAGGTACGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
JMSF040K11+           ATNTAGATGGACNAAAGGCTCAGGTANGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
JMSF044L18+           ATATAGATGGACAAAAGGCTCAGGTACGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
                      ____________________________________________________________
consensus             ATATAGATGGACAAAAGGCTCAGGTACGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141E12+           TCATCAGAAACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
JMFS010F08+           TCATCAGAAACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
JMFF026H04+           TCATCAGAAACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
JMSF040K11+           TCATCAGANACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
JMSF044L18+           TCATCAGAAACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
                      ____________________________________________________________
consensus             TCATCAGAAACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141E12+           CTCAACCCCGGAAGATAAAAAACACAACGAAGAGCGCATGAAACTGAGTGAAAACCAATG
JMFS010F08+           CTCAACCCCGGAAGATAAAAAACACAACGAAGAGCGCATGAAACTGAGTGAAAACCAATG
JMFF026H04+           CTCAACCCCGGAAGATAAAAAACACAACGAAGAGCGCATGAAACTGAGTGAAAACCAATG
JMSF040K11+           NTCAACCCCGGAAGATAAAAAACACANCGAAGAGCGCATGAAACTGAGTGAAAACCAATG
JMSF044L18+           CTCAACCCCGGAAGATAAAAAACACAACGAAGAGCGCATGAAACTGAGTGAAAACCAATG
                      ____________________________________________________________
consensus             CTCAACCCCGGAAGATAAAAAACACAACGAAGAGCGCATGAAACTGAGTGAAAACCAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141E12+           CAGATTATCTAGGGATGGAGAGAGGCATAGCGTCACCTCT-CTGATTAATTTGA      
JMFS010F08+           CAGATTATCTAGGGATGGAGAGAGGCATAGCGTCACCTCT-CTGATTAATTTGAGAGAGA
JMFF026H04+           CAGATTATCTAGGGATGGAGAGAGGCATAGCGTCACCTCT-CTGATTAATTTGAGAGAGA
JMSF040K11+           CAGATNATCTAGGGATGGAGAGAGGCATAGCGTCACCTCTCCTGATTAATTTGAGAGNGA
JMSF044L18+           CAGATTATCTAGGGATGGAGAGAGGCATAGCGTCACCTCT-CTGATTAATTTGAGAGAGA
                      ____________________________________________________________
consensus             CAGATTATCTAGGGATGGAGAGAGGCATAGCGTCACCTCT-CTGATTAATTTGAGAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS010F08+           TATAGAGAGAGAATGAGA                                          
JMFF026H04+           TATAGAGAGAGAATGAGAGAGA                                      
JMSF040K11+           TATAGNGAGAGANTGAGAGAGA-CTGTGGCTCTTCCTTGCTGTGGATGGTT         
JMSF044L18+           TATAGAGAGAGAATGAGAGAGATCTGTGGCTCTTCCTTGCTGTGGATGGTTAACAGAGCC
                      ____________________________________________________________
consensus             TATAGAGAGAGAATGAGAGAGATCTGTGGCTCTTCCTTGCTGTGGATGGTTAACAGAGCC