Contig 008043:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026H04Sequence520008043 (5)745001468 (3)ref|XP_009615190.1|2e-71PREDICTED: ankyrin repeat protein SKIP35 [Nicotiana tomentosiformis] ref|XP_0096
JMFS010F08Sequence591008043 (5)
JMFS141E12Sequence626008043 (5)
JMSF040K11Sequence398008043 (5)864001468 (3)ref|XP_009615190.1|1e-108PREDICTED: ankyrin repeat protein SKIP35 [Nicotiana tomentosiformis] ref|XP_0096
JMSF044L18Sequence745008043 (5)739001468 (3)ref|XP_009760838.1|7e-29PREDICTED: ankyrin repeat protein SKIP35-like [Nicotiana sylvestris] ref|XP_0097

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044L18+ CGTTTTCCGAGTTAAAAACTACAATT
                      ____________________________________________________________
consensus CGTTTTCCGAGTTAAAAACTACAATT
 
. : . : . : . : . : . :
JMFS141E12+ TCACCTATTTCCACATCCATTTCGGAACAATGA
JMSF044L18+ TGATCCGTCAGACTCGAGACACCGGTCTCACCTATTTCCACATCCATTTCGGAACAATGA
                      ____________________________________________________________
consensus TGATCCGTCAGACTCGAGACACCGGTCTCACCTATTTCCACATCCATTTCGGAACAATGA
 
. : . : . : . : . : . :
JMFS141E12+ GACTCTACCATATTGACACCACCCCCCAAATTCAGGTCTTGGGTCTCCACCACAAATGGT
JMFS010F08+ CAAATTCAGGTCTTGGGTCTCCACCACAAATGGT
JMSF044L18+ GACTCTACCATATTGACACCACCCCCCAAATTCAGGTCTTGGGTCTCCACCACAAATGGT
                      ____________________________________________________________
consensus GACTCTACCATATTGACACCACCCCCCAAATTCAGGTCTTGGGTCTCCACCACAAATGGT
 
. : . : . : . : . : . :
JMFS141E12+ CTCTTCTCTTCTTTCATTGTACACCAAAAACTAGCCAAAGATCCCAACAATTAATTCTTC
JMFS010F08+ CTCTTCTCTTCTTTCATTGTACACCAAAAACTAGCCAAAGATCCCAACAATTAATTCTTC
JMFF026H04+ CTTC
JMSF044L18+ CTCTTCTCTTCTTTCATTGTACACCAAAAACTAGCCAAAGATCCCAACAATTAATTCTTC
                      ____________________________________________________________
consensus CTCTTCTCTTCTTTCATTGTACACCAAAAACTAGCCAAAGATCCCAACAATTAATTCTTC
 
. : . : . : . : . : . :
JMFS141E12+ CAAACACCACTTATAATCGTAGCTAATTGCAAACCCTCAATCCATAATCCATACAAATCA
JMFS010F08+ CAAACACCACTTATAATCGTAGCTAATTGCAAACCCTCAATCCATAATCCATACAAATCA
JMFF026H04+ CAAACACCACTTATAATCGTAGCTAATTGCAAACCCTCAATCCATAATCCATACAAATCA
JMSF044L18+ CAAACACCACTTATAATCGTAGCTAATTGCAAACCCTCAATCCATAATCCATACAAATCA
                      ____________________________________________________________
consensus CAAACACCACTTATAATCGTAGCTAATTGCAAACCCTCAATCCATAATCCATACAAATCA
 
. : . : . : . : . : . :
JMFS141E12+ AAACTTTCCTTCAGAACCTCAGGAATATATGACTAGAAACAAAACCAAATTCGGAGATCA
JMFS010F08+ AAACTTTCCTTCAGAACCTCAGGAATATATGACTAGAAACAAAACCAAATTCGGAGATCA
JMFF026H04+ AAACTTTCCTTCAGAACCTCAGGAATATATGACTAGAAACAAAACCAAATTCGGAGATCA
JMSF044L18+ AAACTTTCCTTCAGAACCTCAGGAATATATGACTAGAAACAAAACCAAATTCGGAGATCA
                      ____________________________________________________________
consensus AAACTTTCCTTCAGAACCTCAGGAATATATGACTAGAAACAAAACCAAATTCGGAGATCA
 
. : . : . : . : . : . :
JMFS141E12+ GATACAATCTATCAGCCAAGCTCAAACACAACCTAGATTTTTTCTAGATGAAGGAAACTA
JMFS010F08+ GATACAATCTATCAGCCAAGCTCAAACACAACCTAGATTTTTTCTAGATGAAGGAAACTA
JMFF026H04+ GATACAATCTATCAGCCAAGCTCAAACAGAACCTAGATTTTTTCTAGATGAAGGAAACTA
JMSF040K11+ AGCCAAGCTCAAACACAACCTAGATTTNTTCTAGATGANGGAANNTN
JMSF044L18+ GATACAATCTATCAGCCAAGCTCAAACACAACCTAGATTTTTTCTAGATGAAGGAAANTA
                      ____________________________________________________________
consensus GATACAATCTATCAGCCAAGCTCAAACACAACCTAGATTTTTTCTAGATGAAGGAAACTA
 
. : . : . : . : . : . :
JMFS141E12+ GAACAGGGAACAAAGAGCAAAAAACCCTAGCCCAATACAAACATATACGCTTGGATACAT
JMFS010F08+ GAACAGGGAACAAAGAGCAAAAAACCCTAGCCCAATACAAACATATACGCTTGGATACAT
JMFF026H04+ GAACAGGGAACAAAGAGCAAAAAACCCTAGCCCAATACAAACATATACGCTTGGATACAT
JMSF040K11+ GAACAGGGAACAAAGAGCAAAAAACCCTAGNCCAATACAAACATATACGCTCGGATACAT
JMSF044L18+ GAACAGGGAACAAAGAGCAAAAAACCCTAGCCCAATACAAACATATACGCTTGGATACAT
                      ____________________________________________________________
consensus GAACAGGGAACAAAGAGCAAAAAACCCTAGCCCAATACAAACATATACGCTTGGATACAT
 
. : . : . : . : . : . :
JMFS141E12+ ATATAGATGGACAAAAGGCTCAGGTACGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
JMFS010F08+ ATATAGATGGACAAAAGGCTCAGGTACGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
JMFF026H04+ ATATAGATGGACAAAAGGCTCAGGTACGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
JMSF040K11+ ATNTAGATGGACNAAAGGCTCAGGTANGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
JMSF044L18+ ATATAGATGGACAAAAGGCTCAGGTACGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
                      ____________________________________________________________
consensus ATATAGATGGACAAAAGGCTCAGGTACGAAGCTCCACTGTCAGAAACACCCGCATCGCCA
 
. : . : . : . : . : . :
JMFS141E12+ TCATCAGAAACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
JMFS010F08+ TCATCAGAAACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
JMFF026H04+ TCATCAGAAACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
JMSF040K11+ TCATCAGANACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
JMSF044L18+ TCATCAGAAACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
                      ____________________________________________________________
consensus TCATCAGAAACCCTAAGGAGAAACCCCTTGTTCTCAGTACCAAGCAGTCAAATCCACAGC
 
. : . : . : . : . : . :
JMFS141E12+ CTCAACCCCGGAAGATAAAAAACACAACGAAGAGCGCATGAAACTGAGTGAAAACCAATG
JMFS010F08+ CTCAACCCCGGAAGATAAAAAACACAACGAAGAGCGCATGAAACTGAGTGAAAACCAATG
JMFF026H04+ CTCAACCCCGGAAGATAAAAAACACAACGAAGAGCGCATGAAACTGAGTGAAAACCAATG
JMSF040K11+ NTCAACCCCGGAAGATAAAAAACACANCGAAGAGCGCATGAAACTGAGTGAAAACCAATG
JMSF044L18+ CTCAACCCCGGAAGATAAAAAACACAACGAAGAGCGCATGAAACTGAGTGAAAACCAATG
                      ____________________________________________________________
consensus CTCAACCCCGGAAGATAAAAAACACAACGAAGAGCGCATGAAACTGAGTGAAAACCAATG
 
. : . : . : . : . : . :
JMFS141E12+ CAGATTATCTAGGGATGGAGAGAGGCATAGCGTCACCTCT-CTGATTAATTTGA
JMFS010F08+ CAGATTATCTAGGGATGGAGAGAGGCATAGCGTCACCTCT-CTGATTAATTTGAGAGAGA
JMFF026H04+ CAGATTATCTAGGGATGGAGAGAGGCATAGCGTCACCTCT-CTGATTAATTTGAGAGAGA
JMSF040K11+ CAGATNATCTAGGGATGGAGAGAGGCATAGCGTCACCTCTCCTGATTAATTTGAGAGNGA
JMSF044L18+ CAGATTATCTAGGGATGGAGAGAGGCATAGCGTCACCTCT-CTGATTAATTTGAGAGAGA
                      ____________________________________________________________
consensus CAGATTATCTAGGGATGGAGAGAGGCATAGCGTCACCTCT-CTGATTAATTTGAGAGAGA
 
. : . : . : . : . : . :
JMFS010F08+ TATAGAGAGAGAATGAGA
JMFF026H04+ TATAGAGAGAGAATGAGAGAGA
JMSF040K11+ TATAGNGAGAGANTGAGAGAGA-CTGTGGCTCTTCCTTGCTGTGGATGGTT
JMSF044L18+ TATAGAGAGAGAATGAGAGAGATCTGTGGCTCTTCCTTGCTGTGGATGGTTAACAGAGCC
                      ____________________________________________________________
consensus TATAGAGAGAGAATGAGAGAGATCTGTGGCTCTTCCTTGCTGTGGATGGTTAACAGAGCC