| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS053C05 | Sequence | 597 | 008039 (7) | ref|XP_006346768.1| | 2e-40 | PREDICTED: uncharacterized membrane protein At1g16860-like [Solanum tuberosum] | |||||
| JMSF029I15 | Sequence | 652 | 008039 (7) | ref|XP_004236674.1| | 2e-40 | PREDICTED: uncharacterized membrane protein At1g16860-like [Solanum lycopersicu | 725 | 008039 (7) | ref|XP_009783871.1| | 2e-83 | PREDICTED: uncharacterized membrane protein At1g16860-like [Nicotiana sylvestri |
| JMSF042F18 | Sequence | 777 | 008039 (7) | ref|XP_006346768.1| | 4e-72 | PREDICTED: uncharacterized membrane protein At1g16860-like [Solanum tuberosum] | 814 | 008039 (7) | ref|XP_009783871.1| | 1e-94 | PREDICTED: uncharacterized membrane protein At1g16860-like [Nicotiana sylvestri |
| JMSF044F13 | Sequence | 817 | 008039 (7) | ref|XP_004236674.1| | 4e-72 | PREDICTED: uncharacterized membrane protein At1g16860-like [Solanum lycopersicu | 835 | 008039 (7) | ref|XP_009783871.1| | 8e-93 | PREDICTED: uncharacterized membrane protein At1g16860-like [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
rJMSF042F18- AAGATTGTTATTACAAAGAATTTTAAGTTTCATCTTGAATTA
rJMSF029I15- ATCTTGAATTA
rJMSF044F13- AATAAGCAAAGATTGTTATTACAAAGAATTTTAAGTTTCATCTTGAATTA
____________________________________________________________
consensus AATAAGCAAAGATTGTTATTACAAAGAATTTTAAGTTTCATCTTGAATTA
. : . : . : . : . : . :
rJMSF042F18- TTGAAAGGGCAAAGACTGGATAATTTACATAGAATGTGGAATGTGATACTCAGGGGAGGA
rJMSF029I15- TTGAAAGGGCAAAGACTGGATAATTTACATAGAATGTGGAATGTGATACTCAGGGGAGGA
rJMSF044F13- TTGAAAGGGCAAAGACTGGATAATTTACATAGAATGTGGAATGTGATACTCAGGGGAGGA
____________________________________________________________
consensus TTGAAAGGGCAAAGACTGGATAATTTACATAGAATGTGGAATGTGATACTCAGGGGAGGA
. : . : . : . : . : . :
rJMSF042F18- --ACTTTTCTTGCCTCTCCTGTGTGGTTGTGGACCACTATAACAAAGCTTTAACTCAACA
rJMSF029I15- ACACTTTTCTTGCCTCTCCTGTGTGGTTGTGGACCACTATAACAAAGCTTTAACTCAACA
rJMSF044F13- ACACTTTTCTTGCCTCTCCTGTGTGGTTGTGGACCACTATAACAAAGCTTTAACTCAACA
____________________________________________________________
consensus ACACTTTTCTTGCCTCTCCTGTGTGGTTGTGGACCACTATAACAAAGCTTTAACTCAACA
. : . : . : . : . : . :
rJMSF042F18- ATAACACATCAGGGCCCTCCATTTCTTCACTCTTAAGGCCAAATGTACATAGATCGTAAA
rJMSF029I15- ATAACACATCAGGGCCCTCCATTTCTTCACTCTTAAGGCCAAATGTACATAGATCGTAAA
rJMSF044F13- ATAACACATCAGGGCCCTCCATTTCTTCACTCTTAAGGCCAAATGTACATAGATCGTAAA
____________________________________________________________
consensus ATAACACATCAGGGCCCTCCATTTCTTCACTCTTAAGGCCAAATGTACATAGATCGTAAA
. : . : . : . : . : . :
rJMSF042F18- ATCCTCCATATAAGTGTAAAGGACTCGCCATTGTCCTACCGCCACACGAGATCCATAGTT
rJMSF029I15- ATCCTCCATATAAGTGTAAAGGACTCGCCATTGTCCTACCGCCACACGAGATCCATAGTT
rJMSF044F13- ATCCTCCATATAAGTGTAAAGGACTCGCCATTGTCCTACCGCCACACGAGATCCATAGTT
____________________________________________________________
consensus ATCCTCCATATAAGTGTAAAGGACTCGCCATTGTCCTACCGCCACACGAGATCCATAGTT
. : . : . : . : . : . :
rJMSF042F18- TGAGAAAGCGTTTGCCAAAATCTAGACGGGAATTACATCAGAATTCTGGGTTTCGTCGCA
rJMSF029I15- TGAGAAAGCGTTTGCCAAAATCTAGACGGGAATTACATCAGAATTCTGGGTTTCGTCGCA
rJMSF044F13- TGAGAAAGCGTTTGCCAAAATCTAGACGGGAATTACATCAGAATTCTGGGTTTCGTCGCA
____________________________________________________________
consensus TGAGAAAGCGTTTGCCAAAATCTAGACGGGAATTACATCAGAATTCTGGGTTTCGTCGCA
. : . : . : . : . : . :
rJMSF042F18- TGCCAAGACCAGAGCTTCGATGTTGGTCAGGGGAAGACACCGAGCCCATTGACAACCCGT
rJMSF029I15- TGCCAAGACCAGAGCTTCGATGTTGGTCAGGGGAAGACACCGAGCCCATTGACAACCCGT
rJMSF044F13- TGCCAAGACCAGAGCTTCGATGTTGGTCAGGGGAAGACACCGAGCCCATTGACAACCCGT
____________________________________________________________
consensus TGCCAAGACCAGAGCTTCGATGTTGGTCAGGGGAAGACACCGAGCCCATTGACAACCCGT
. : . : . : . : . : . :
rJMSF042F18- TGATACTGCTTCACCCGGTGGAACAATCATTAGCACATTAGCGTGGCGTCTAACAACACC
rJMSF029I15- TGATACTGCTTCACCCGGTGGAACAATCATTAGCACATTAGCGTGGCGTCTAACAACACC
rJMSF044F13- TGATACTGCTTCACCCGGTGGAACAATCATTAGCACATTAGCGTGGCGTCTAACAACACC
____________________________________________________________
consensus TGATACTGCTTCACCCGGTGGAACAATCATTAGCACATTAGCGTGGCGTCTAACAACACC
. : . : . : . : . : . :
rJMSF042F18- CATCACGCTCACAGTGCTGCCTTCTTTGATGTAGCCTTCCTTGAGGCGCATGATGCGGTC
rJMSF029I15- CATCACGCTCACAGTGCTGCCTTCTTTGATGTAGCCTTCCTTGAGGCGCATGATGCGGTC
rJMSF044F13- CATCACGCTCACAGTGCTGCCTTCTTTGATGTAGCCTTCCTTGAGGCGCATGATGCGGTC
____________________________________________________________
consensus CATCACGCTCACAGTGCTGCCTTCTTTGATGTAGCCTTCCTTGAGGCGCATGATGCGGTC
. : . : . : . : . : . :
rJMSF042F18- ATCACTTGAGAGGTTTCTATCGGAAAGCCACTGCAAGAAATTTGGAGATAGGTCTCTGTT
rJMSF029I15- ATCACTTGAGAGGTTTCTATCGGAAAGCCACTGCAAGAAATTTGGAGATAGGTCTCTGTT
rJMSF044F13- ATCACTTGAGAGGTTTCTATCGGAAAGCCACTGCAAGAAATTTGGAGATAGGTCTCTGTT
____________________________________________________________
consensus ATCACTTGAGAGGTTTCTATCGGAAAGCCACTGCAAGAAATTTGGAGATAGGTCTCTGTT
. : . : . : . : . : . :
rJMSF042F18- GCTCTTGGTTACGTCGACAACTGTTGATGGTTTGACAAATGGAGAAACCTTGGCTCCATA
rJMSF029I15- GCTCTTGGTTACGTCGACAACTGTTGATGGTTTGACAAATGGAGAAACCTTGGCTCCATA
rJMSF044F13- GCTCTTGGTTACGTCGACAACTGTTGATGGTTTGACAAATGGAGAAACCTTGGCTCCATA
____________________________________________________________
consensus GCTCTTGGTTACGTCGACAACTGTTGATGGTTTGACAAATGGAGAAACCTTGGCTCCATA
. : . : . : . : . : . :
rJMSF042F18- GCCTGCTTTCACCAGAGCTCTTAAGCCAGACTGGAAGTCTGATATGTAAAAGTCGGCCAC
rJMSF029I15- GCCTGCTTTCACCAGAGCTCTTAAGCCAGACTGGAAGTCTGATATGTAAAAGTCGGCCAC
rJMSF044F13- GCCTGCTTTCACCAGAGCTCTTAAGCCAGACTGGAAGTCTGATATGTAAAAGTCGGCCAC
____________________________________________________________
consensus GCCTGCTTTCACCAGAGCTCTTAAGCCAGACTGGAAGTCTGATATGTAAAAGTCGGCCAC
. : . : . : . : . : . :
rJMSF042F18- AAATTTCTCAGAATGCCTTCGTCCCCACGAGAAGAATCTGTGTTTAGAATTTGAAGGCTT
rJMSF029I15- AAATTTCTCAGAATGCCTTCGTCCCCACGAGAAGAATCTGTGTTTAGAATTTGA
rJMSF044F13- AAATTTCTCAGAATGCCTTCGTCCCCACGAGAAGAATCTGTGTTTAGAATTTGAAGGCTT
JMSF042F18+ CCCCACGAGAAGAATCTGTGTTTAGAATTTGAAGGCTT
JMSF044F13+ CCCCACGAGAAGAATCTGTGTTTAGAATTTGAAGGCTT
____________________________________________________________
consensus AAATTTCTCAGAATGCCTTCGTCCCCACGAGAAGAATCTGTGTTTAGAATTTGAAGGCTT
. : . : . : . : . : . :
rJMSF042F18- TCCACCCCAACCTCTGTACTCATACAATTCTGTGGAAA
rJMSF044F13- TCCACCCCAACCTCTGTACTCATACAATTCTGTGGAAAACATATACACATCTTGGTGTCC
JMSF042F18+ TCCACCCCAACCTCTGTACTCATACAATTCTGTGG-AAACATATACACATCTTGGTGTCC
JMSF044F13+ TCCACCCCAACCTCTGTACTCATACAATTCTGTGG-AAACATATACACATCTTGGTGTCC
____________________________________________________________
consensus TCCACCCCAACCTCTGTACTCATACAATTCTGTGGAAAACATATACACATCTTGGTGTCC
. : . : . : . : . : . :
rJMSF044F13- TCTGA
JMSF042F18+ TCTGAAACGAGGTTTCAAGTGGAATACTGCCACAAGTGACAACCCCGGTGACCTTGACGT
JMSF029I15+ GACCTTGACGT
JMSF044F13+ TCTGAAACGAGGTTTCAAGTGGAATACTGCCACAAGTGACAACCCCGGTGACCTTGACGT
____________________________________________________________
consensus TCTGAAACGAGGTTTCAAGTGGAATACTGCCACAAGTGACAACCCCGGTGACCTTGACGT
. : . : . : . : . : . :
JMFS053C05+ AAGCTCGGCGTCGGGAAATNTCTTGAGAAACCCCAATG
JMSF042F18+ ACTGTCCATCGACGGCGCCTCTAAGCTCGGCGTCGGGAAATTTCTTGAGAAACCCCAATG
JMSF029I15+ ACTGTCCATCGACGGCGCCTCTAAGCTCGGCGTCGGGAAATTTCTTGAGAAACCCCAATG
JMSF044F13+ ACTGTCCATCGACGGCGCCTCTAAGCTCGGCGTCGGGAAATTTCTTGAGAAACCCCAATG
____________________________________________________________
consensus ACTGTCCATCGACGGCGCCTCTAAGCTCGGCGTCGGGAAATTTCTTGAGAAACCCCAATG
. : . : . : . : . : . :
JMFS053C05+ AGCCTCGCGGCTTCACTTCCTTAACCAGTCTAGTGACGGCGGAGCTGTAGAGCTTCTTGT
JMSF042F18+ AGCCTCGCGGCTTCACTTCCTTAACCAGTCTAGTGACGGCGGAGCTGTAGAGCTTCTTGT
JMSF029I15+ AGCCTCGCGGCTTCACTTCCTTAACCAGTCTAGTGACGGCGGAGCTGTAGAGCTTCTTGT
JMSF044F13+ AGCCTCGCGGCTTCACTTCCTTAACCAGTCTAGTGACGGCGGAGCTGTAGAGCTTCTTGT
____________________________________________________________
consensus AGCCTCGCGGCTTCACTTCCTTAACCAGTCTAGTGACGGCGGAGCTGTAGAGCTTCTTGT
. : . : . : . : . : . :
JMFS053C05+ TGAAGGAAGCGGAGGGCTCGGGCTGGACGGCGCGGCCGGCGCCGCCGCCGCTGGAATCGA
JMSF042F18+ TGAAGGAAGCGGAGGGCTCGGGCTGGACGGCGCGGCCGGCGCCGCCGCCGCTGGAATCGA
JMSF029I15+ TGAAGGAAGCGGAGGGCTCGGGCTGGACGGCGCGGCCGGCGCCGCCGCCGCTGGAATCGA
JMSF044F13+ TGAAGGAAGCGGAGGGCTCGGGCTGGACGGCGCGGCCGGCGCCGCCGCCGCTGGAATCGA
____________________________________________________________
consensus TGAAGGAAGCGGAGGGCTCGGGCTGGACGGCGCGGCCGGCGCCGCCGCCGCTGGAATCGA
. : . : . : . : . : . :
JMFS053C05+ GCGGGCCGGAGTTGGAAGTGATGAGGCCAGTGGGCTGGATGGGAGTCGGGCCGGAGAAGG
JMSF042F18+ GCGGGCCGGAGTTGGAAGTGATGAGGCCAGTGGGCTGGATGGGAGTCGGGCCGGAGAAGG
JMSF029I15+ GCGGGCCGGAGTTGGAAGTGATGAGGCCAGTGGGCTGGATGGGAGTCGGGCCGGAGAAGG
JMSF044F13+ GCGGGCCGGAGTTGGAAGTGATGAGGCCAGTGGGCTGGATGGGAGTCGGGCCGGAGAAGG
____________________________________________________________
consensus GCGGGCCGGAGTTGGAAGTGATGAGGCCAGTGGGCTGGATGGGAGTCGGGCCGGAGAAGG
. : . : . : . : . : . :
JMFS053C05+ AGGACGATTTCTTGGGGATCGTGCCGGAGTTGTTTGACTTGTGGCCCTGCTGACCCGAGT
JMSF042F18+ AGGACGATTTCTTGGGGATCGTGCCGGAGTTGTTTGACTTGTGGCCCTGCTGACCCGAGT
JMSF029I15+ AGGACGATTTCTTGGGGATCGTGCCGGAGTTGTTTGACTTGTGGCCCTGCTGACCCGAGT
JMSF044F13+ AGGACGATTTCTTGGGGATCGTGCCGGAGTTGTTTGACTTGTGGCCCTGCTGACCCGAGT
____________________________________________________________
consensus AGGACGATTTCTTGGGGATCGTGCCGGAGTTGTTTGACTTGTGGCCCTGCTGACCCGAGT
. : . : . : . : . : . :
JMFS053C05+ TGGGCCTGGATCTGACGGCTCCACCGCTGTGCTGCGACGACGACGACGGCGCTCTGGACG
JMSF042F18+ TGGGCCTGGATCTGACGGCTCCACCGCTGTGCTGCGACGACGACGACGGCGCTCTGGACG
JMSF029I15+ TGGGCCTGGATCTGACGGCTCCACCGCTGTGCTGCGACGACGACGACGGCGCTCTGGACG
JMSF044F13+ TGGGCCTGGATCTGACGGCTCCACCGCTGTGCTGCGACGACGACGACGGCGCTCTGGACG
____________________________________________________________
consensus TGGGCCTGGATCTGACGGCTCCACCGCTGTGCTGCGACGACGACGACGGCGCTCTGGACG
. : . : . : . : . : . :
JMFS053C05+ CCGGCTTGTGCACGTACGGCCCGCTCCCCGACTCTATTCCGTACATTTTCCCTAACTCCC
JMSF042F18+ CCGGCTTGTGCACGTACGGCCCGCTCCCCGACTCTATTCCGTACATTTTCCCTAACTCCC
JMSF029I15+ CCGGCTTGTGCACGTACGGCCCGCTCCCCGACTCTATTCCGTACATTTTCCCTAACTCCC
JMSF044F13+ CCGGCTTGTGCACGTACGGCCCGCTCCCCGACTCTATTCCGTACATTTTCCCTAACTCCC
____________________________________________________________
consensus CCGGCTTGTGCACGTACGGCCCGCTCCCCGACTCTATTCCGTACATTTTCCCTAACTCCC
. : . : . : . : . : . :
JMFS053C05+ CTGATTTCTTCACGTCTCCGCCGGTGTAAGGCATCGCCCGCGACGCCATGGTGGGCGGCC
JMSF042F18+ CTGATTTCTTCACGTCTCCGCCGGTGTAAGGCATCGCCCGCGACGCCATGGTGGGCGGCC
JMSF029I15+ CTGATTTCTTCACGTCTCCGCCGGTGTAAGGCATCGCCCGCGACGCCATGGTGGGCGGCC
JMSF044F13+ CTGATTTCTTCACGTCTCCGCCGGTGTAAGGCATCGCCCGCGACGCCATGGTGGGCGGCC
____________________________________________________________
consensus CTGATTTCTTCACGTCTCCGCCGGTGTAAGGCATCGCCCGCGACGCCATGGTGGGCGGCC
. : . : . : . : . : . :
JMFS053C05+ GCTCCTTCGCCTGCTCGGGTCGACCCGACACGTACAGCCCATTCTTCAGCTGGTGCGACG
JMSF042F18+ GCTCCTTCGCCTGCTCGGGTCGACCCGACACGTACAGCCCATTCTTCAGCTGGTGCGACG
JMSF029I15+ GCTCCTTCGCCTGCTCGGGTCGACCCGACACGTACAGCCCATTCTTCAGCTGGTGCGACG
JMSF044F13+ GCTCCTTCGCCTGCTCGGGTCGACCCGACACGTACAGCCCATTCTTCAGCTGGTGCGACG
____________________________________________________________
consensus GCTCCTTCGCCTGCTCGGGTCGACCCGACACGTACAGCCCATTCTTCAGCTGGTGCGACG
. : . : . : . : . : . :
JMFS053C05+ CCGTCCGCATCCCCATTTTTTCCGGCGAGTAAAAACCGCAGCCGAGCGATAGAGAGAGAG
JMSF042F18+ CCGTCCGCATCCCCATTTTTTCCGGCGAGTAAAAACCGCAGCCGAGCGATAGAGAGAGAG
JMSF029I15+ CCGTCCGCATCCCCATTTTTTCCGGCGAGTAAAAACCGCAGCCGAGCGATAGAGAGAGAG
JMSF044F13+ CCGTCCGCATCCCCATTTTTTCCGGCGAGTAAAAACCGCAGCCGAGCGATAGAGAGAGAG
____________________________________________________________
consensus CCGTCCGCATCCCCATTTTTTCCGGCGAGTAAAAACCGCAGCCGAGCGATAGAGAGAGAG
. : . : . : . : . : . :
JMFS053C05+ AGAGAGAAAGAGTGTCTCT
JMSF042F18+ AGAGAGAAAGAGTGTCTCT
JMSF029I15+ AGAGAGAAAGAGTGTCTCTGTGTGTGCTTTTTTCTGAGTCG
JMSF044F13+ AGAGAGAAAGAGTGTCTCTGTGTGTGCTTTTTTCTGAGTCGGTGGAAAAATGGAAACGTC
____________________________________________________________
consensus AGAGAGAAAGAGTGTCTCTGTGTGTGCTTTTTTCTGAGTCGGTGGAAAAATGGAAACGTC