Contig 008038:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006P06Sequence611008038 (7)ref|XP_004232407.1|3e-58PREDICTED: 60S ribosomal protein L6, mitochondrial [Solanum lycopersicum] ref|XP236008038 (7)
JMFN008L19Sequence633008038 (7)ref|XP_004232407.1|2e-57PREDICTED: 60S ribosomal protein L6, mitochondrial [Solanum lycopersicum] ref|XP
JMSF039O14Sequence654008038 (7)ref|XP_004232407.1|4e-58PREDICTED: 60S ribosomal protein L6, mitochondrial [Solanum lycopersicum] ref|XP624008038 (7)ref|XP_004232407.1|3e-58PREDICTED: 60S ribosomal protein L6, mitochondrial [Solanum lycopersicum] ref|XP
JMSF044E08Sequence698008038 (7)ref|XP_004232407.1|5e-57PREDICTED: 60S ribosomal protein L6, mitochondrial [Solanum lycopersicum] ref|XP654008038 (7)ref|XP_004232407.1|3e-57PREDICTED: 60S ribosomal protein L6, mitochondrial [Solanum lycopersicum] ref|XP

Alignment

This contig is upended


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rJMFF006P06-                                                   GATATTATGCCAACAACTG
                      ____________________________________________________________
consensus                                                      GATATTATGCCAACAACTG
 
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rJMFF006P06-          AGAGATCTCCACAAGACCACAACCAAAATGTTGGCTTTCCTTGTCAATATAATGTGCAAT
                      ____________________________________________________________
consensus             AGAGATCTCCACAAGACCACAACCAAAATGTTGGCTTTCCTTGTCAATATAATGTGCAAT
 
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rJMFF006P06-          CAATCAATTAGTTTAAGAAATAAATACGAATTCTAAGGTGTTTCAATGAGCATATCTTTA
JMFN008L19+                                                  GTTTCAATGAGCATATCTTTA
JMSF044E08+                                         TTCTAAGGTGTTTCAATGAGCATATCTTTA
                      ____________________________________________________________
consensus             CAATCAATTAGTTTAAGAAATAAATACGAATTCTAAGGTGTTTCAATGAGCATATCTTTA
 
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rJMFF006P06-          TATCAGATAGTCATAGAATGCAGAGGGAGAACACCAAATTCAAGAACATGGCTACTGTAA
rJMSF044E08-                ATAGTCATAGAATGCAGAGGGAGAACACCAAATTCAAGAACATGGCTACTGTAA
JMSF039O14+              CAGATAGTCATAGAATGCAGAGGGAGAACACCAAATTCAAGAACATGGCTACTGTAA
JMFN008L19+           TATCAGATAGTCATAGAATGCAGAGGGAGAACACCAAATTCAAGAACATGGCTACTGTAA
JMFF006P06+                                                        ACATGGCTACTGTAA
rJMSF039O14-                                           CCAAATTCAAGAACATGGCTACTGTAA
JMSF044E08+           TATCAGATAGTCATAGAATGCAGAGGGAGAACACCAAATTCAAGAACATGGCTACTGTAA
                      ____________________________________________________________
consensus             TATCAGATAGTCATAGAATGCAGAGGGAGAACACCAAATTCAAGAACATGGCTACTGTAA
 
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rJMFF006P06-          TACTTCCTTCCAAAGCAAAGATATTGCATGACAAAAT                       
rJMSF044E08-          TACTTCCTTCCAAAGCAAAGATATTGCATGACAAAATCTTGAAGGGAAATAGAGTGCTAT
JMSF039O14+           TACTTCCTTCCAAAGCAAAGATATTGCATGACAAAATCTTGAAGGGAAATAGAGTGCTAT
JMFN008L19+           TACTTCCTTCCAAAGCAAAGATATTGCATGACAAAATCTTGAAGGGAAATAGAGTGCTAT
JMFF006P06+           TACTTCCTTCCAAAGCAAAGATATTGCATGACAAAATCTTGAAGGGAAATAGAGTGCTAT
rJMSF039O14-          TACTTCCTTCCAAAGCAAAGATATTGCATGACAAAATCTTGAAGGGAAATAGAGTGCTAT
JMSF044E08+           TACTTCCTTCCAAAGCAAAGATATTGCATGACAAAATCTTGAAGGGAAATAGAGTGCTAT
                      ____________________________________________________________
consensus             TACTTCCTTCCAAAGCAAAGATATTGCATGACAAAATCTTGAAGGGAAATAGAGTGCTAT
 
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rJMSF044E08-          AATCTTATCAAATGGAATGTAGGTTTTTGATCCCTCCAGAGAAATTTAACAGGAAAGGTG
JMSF039O14+           AATCTTATCAAATGGAATGTAGGTTTTTGATCCCTCCAGAGAAATTTAACAGGAAAGGTG
JMFN008L19+           AATCTTATCAAATGGAATGTAGGTTTTTGATCCCTCCAGAGAAATTTAACAGGAAAGGTG
JMFF006P06+           AATCTTATCAAATGGAATGTAGGTTTTTGATCCCTCCAGAGAAATTTAACAGGAAAGGTG
rJMSF039O14-          AATCTTATCAAATGGAATGTAGGTTTTTGATCCCTCCAGAGAAATTTAACAGGAAAGGTG
JMSF044E08+           AATCTTATCAAATGGAATGTAGGTTTTTGATCCCTCCAGAGAAATTTAACAGGAAAGGTG
                      ____________________________________________________________
consensus             AATCTTATCAAATGGAATGTAGGTTTTTGATCCCTCCAGAGAAATTTAACAGGAAAGGTG
 
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rJMSF044E08-          CAAAGAAAATGGAACCTGGGAGCTCATTTCGATTTCTTCCCCTGCTTCTTCTTGATCACT
JMSF039O14+           CAAAGAAAATGGAACCTGGGAGCTCATTTCGATTTCTTCCCCTGCTTCTTCTTGATCACT
JMFN008L19+           CAAAGAAAATGGAACCTGGGAGCTCATTTCGATTTCTTCCCCTGCTTCTTCTTGATCACT
JMFF006P06+           CAAAGAAAATGGAACCTGGGAGCTCATTTCGATTTCTTCCCCTGCTTCTTCTTGATCACT
rJMSF039O14-          CAAAGAAAATGGAACCTGGGAGCTCATTTCGATTTCTTCCCCTGCTTCTTCTTGATCACT
JMSF044E08+           CAAAGAAAATGGAACCTGGGAGCTCATTTCGATTTCTTCCCCTGCTTCTTCTTGATCACT
                      ____________________________________________________________
consensus             CAAAGAAAATGGAACCTGGGAGCTCATTTCGATTTCTTCCCCTGCTTCTTCTTGATCACT
 
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rJMSF044E08-          TCATCAATGTACATTATTCCTTTCCCTTTGTACACTTCAGGGGGCTTACAGCTTCTGATT
JMSF039O14+           TCATCAATGTACATTATTCCTTTCCCTTTGTACACTTCAGGGGGCTTACAGCTTCTGATT
JMFN008L19+           TCATCAATGTACATTATTCCTTTCCCTTTGTACACTTCAGGGGGCTTACAGCTTCTGATT
JMFF006P06+           TCATCAATGTACATTATTCCTTTCCCTTTGTACACTTCAGGGGGCTTACAGCTTCTGATT
rJMSF039O14-          TCATCAATGTACATTATTCCTTTCCCTTTGTACACTTCAGGGGGCTTACAGCTTCTGATT
JMSF044E08+           TCATCAATGTACATTATTCCTTTCCCTTTGTACACTTCAGGGGGCTTACAGCTTCTGATT
                      ____________________________________________________________
consensus             TCATCAATGTACATTATTCCTTTCCCTTTGTACACTTCAGGGGGCTTACAGCTTCTGATT
 
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rJMSF044E08-          GATGCAGCAAACTGATGCGTTCGATGCTTGTCGATCCCAGTGCAGCAGATCACGTTGGGT
JMSF039O14+           GATGCAGCAAACTGATGCGTTCGATGCTTGTCGATCCCAGTGCAGCAGATCACGTTGGGT
JMFN008L19+           GATGCAGCAAACTGATGCGTTCGATGCTTGTCGATCCCAGTGCAGCAGATCACGTTGGGT
JMFF006P06+           GATGCAGCAAACTGATGCGTTCGATGCTTGTCGATCCCAGTGCAGCAGATCACGTTGGGT
rJMSF039O14-          GATGCAGCAAACTGATGCGTTCGATGCTTGTCGATCCCAGTGCAGCAGATCACGTTGGGT
JMSF044E08+           GATGCAGCAAACTGATGCGTTCGATGCTTGTCGATCCCAGTGCAGCAGATCACGTTGGGT
                      ____________________________________________________________
consensus             GATGCAGCAAACTGATGCGTTCGATGCTTGTCGATCCCAGTGCAGCAGATCACGTTGGGT
 
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rJMSF044E08-          TTGAAGCAGAATACGCGAACTGCAGGAGGAACGGTCAGCTCAACCTCATGACTGTAACTC
JMSF039O14+           TTGAAGCAGAATACGCGAACTGCAGGAGGAACGGTCAGCTCAACCTCATGACTGTAACCC
JMFN008L19+           TTGAAGCAGAATACGCGAACTGCAGGAGGAACGGTCAGCTCAACCTCATGACTGTAACCC
JMFF006P06+           TTGAAGCAGAATACGCGAACTGCAGGAGGAACGGTCAGCTCAACCTCATGACTGTAACCC
rJMSF039O14-          TTGAAGCAGAATACGCGAACTGCAGGAGGAACGGTCAGCTCAACCTCATGACTGTAACCC
JMSF044E08+           TTGAAGCAGAATACGCGAACTGCAGGAGGAACGGTCAGCTCAACCTCATGACTGTAACTC
                      ____________________________________________________________
consensus             TTGAAGCAGAATACGCGAACTGCAGGAGGAACGGTCAGCTCAACCTCATGACTGTAACCC
 
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rJMSF044E08-          AGTTTGAGGTACAACAAACGGCCCTCAGATTCTGCTCGTGCTTTGAAACCAACTCCAACA
JMSF039O14+           AGTTTGAGGTACAACAAACGGCCCTCAGATTCTGCTCGTGCTTTGAAACCAACTCCAACA
JMFN008L19+           AGTTTGAGGTACAACAAACGGCCCTCAGATTCTGCTCGTGCTTTGAAACCAACTCCAACA
JMFF006P06+           AGTTTGAGGTACAACAAACGGCCCTCAGATTCTGCTCGTGCTTTGAAACCAACTCCAACA
rJMSF039O14-          AGTTTGAGGTACAACAAACGGCCCTCAGATTCTGCTCGTGCTTTGAAACCAACTCCAACA
JMSF044E08+           AGTTTGAGGTACAACAAACGGCCCTCAGATTCTGCTCGTGCTTTGAAACCAACTCCAACA
                      ____________________________________________________________
consensus             AGTTTGAGGTACAACAAACGGCCCTCAGATTCTGCTCGTGCTTTGAAACCAACTCCAACA
 
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rJMSF044E08-          ATCTTGAGAAAGCGAAAGAATTTAGCTTCCATTGCTACTGAGCAGCTTGCGACAGTGGAG
JMSF039O14+           ATCTTGAGAAAGCGAAAGAATTTAGCTTCCATTGCTACTGAGCAGCTTGCGACAGTGGAG
JMFN008L19+           ATCTTGAGAAAGCGAAAGAATTTAGCTTCCATTGCTACTGAGCAGCTTGCGACAGTGGAG
JMFF006P06+           ATCTTGAGAAAGCGAAAGAATTTAGCTTCCATTGCTACTGAGCAGCTTGCGACAGTGGAG
rJMSF039O14-          ATCTTGAGAAAGCGAAAGAATTTAGCTTCCATTGCTACTGAGCAGCTTGCGACAGTGGAG
JMSF044E08+           ATCTTGAGAAAGCGAAAGAATTTAGCTTCCATTGCTACTGAGCAGCTTGCGACAGTGGAG
                      ____________________________________________________________
consensus             ATCTTGAGAAAGCGAAAGAATTTAGCTTCCATTGCTACTGAGCAGCTTGCGACAGTGGAG
 
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rJMSF044E08-          AGGCCTGAGGCAGAAGACGGTGGGCGGCGGTGACTGGCGAGGAAGAGGCGCCGTGTGGTG
JMSF039O14+           AGGCCTGAGGCAGAAGACGGTGGGCGGCGGTGACTGGCGAGGAAGAGGCGCCGTGTGGTG
JMFN008L19+           AGGCCTGAGGCAGAAGACGGTGGGCGGCGGTGACTGGCGAGGAAGAGGCGCCGTGTGGTG
JMFF006P06+           AGGCCTGAGGCAGAAGACGGTGGGCGGCGGTGACTGGCGAGGAAGAGGCGCCGTGTGGTG
rJMSF039O14-          AGGCCTGAGGCAGAAGACGGTGGGCGGCGGTGACTGGCGAGGAAGAGGCGCCGTGTGGTG
JMSF044E08+           AGGCCTGAGGCAGAAGACGGTGGGCGGCGGTGACTGGCGAGGAAGAGGCGCCGTGTGGTG
                      ____________________________________________________________
consensus             AGGCCTGAGGCAGAAGACGGTGGGCGGCGGTGACTGGCGAGGAAGAGGCGCCGTGTGGTG
 
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rJMSF044E08-          GCGGGCCGCGAGCGTTGGGCGGTGGCGAGAGCAGAGAACGTTTTGGCGAGGGAGGC    
JMSF039O14+           GCGGGCCGCGAGCGTTGGGCGGTGGCGAGAGCAGAGAACGTTTTGGCGAGGGAGGC    
JMFN008L19+           GCGGGCCGCGA                                                 
JMFF006P06+           GCGGGCCGCGAGCGTTGGGCGGTGGCGAGAGCAGAGAACGTTTTGGCGAGGGAGGC    
rJMSF039O14-          GCGGGCCGCGAGCGTTGGGCGGTGGCGAGAGCAGAGAACGTTTTGGCGAGGGAGGC    
JMSF044E08+           GCGGGCCGCGAGCGTTGGGCGGTGGCGAGAGCAGAGAACGTTTTGGCGAGGGAGGCGCCC
                      ____________________________________________________________
consensus             GCGGGCCGCGAGCGTTGGGCGGTGGCGAGAGCAGAGAACGTTTTGGCGAGGGAGGCGCCC