Contig 008028:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF045J20+                  GTATTCACCANCTCTAGATAAATCATCATTATATATAGATCNTATGAGCTTT
                      ____________________________________________________________
consensus                     GTATTCACCANCTCTAGATAAATCATCATTATATATAGATCNTATGAGCTTT
 
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rJMSF045J20+          GTGACTTCAGATGCAATTCTTTTCACAACGTTATCTTATTTGAACCAATTTTTCCACTAA
                      ____________________________________________________________
consensus             GTGACTTCAGATGCAATTCTTTTCACAACGTTATCTTATTTGAACCAATTTTTCCACTAA
 
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rJMSF045J20+          GTTACTTTTGTTAAATTGATGTGGTCAACTTGGGATAGCTTTTATGACTGAAGTTTAAGC
                      ____________________________________________________________
consensus             GTTACTTTTGTTAAATTGATGTGGTCAACTTGGGATAGCTTTTATGACTGAAGTTTAAGC
 
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rJMSF045J20+          CACTCCTTCCCTACCAAAATCCCCCCACAAATGCATACCAAATTGCCCTCTTCCATTCAT
                      ____________________________________________________________
consensus             CACTCCTTCCCTACCAAAATCCCCCCACAAATGCATACCAAATTGCCCTCTTCCATTCAT
 
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rJMSF045J20+          GTGAATATGTGATGACAATGAGCACAGAAGAAATGGAAGAATATCCCACTTCACACTATG
                      ____________________________________________________________
consensus             GTGAATATGTGATGACAATGAGCACAGAAGAAATGGAAGAATATCCCACTTCACACTATG
 
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rJMSF045J20+          TTTACCCATTTTGTGAGATGAGATTCCTTAAATCTTGCCTTCTGGAATAACAGGTTCAAA
                      ____________________________________________________________
consensus             TTTACCCATTTTGTGAGATGAGATTCCTTAAATCTTGCCTTCTGGAATAACAGGTTCAAA
 
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rJMSF045J20+          GGAACAATTATATTCTTTGGGAACAGATGCTTCTTTTGGCACAATGTTTATCATTAATTA
                      ____________________________________________________________
consensus             GGAACAATTATATTCTTTGGGAACAGATGCTTCTTTTGGCACAATGTTTATCATTAATTA
 
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rJMSF045J20+          TCATTTCAACATTTCGATTTGGCAGCATAGTAAAAGAGGTTATGGAGGGGTCACCACATA
                      ____________________________________________________________
consensus             TCATTTCAACATTTCGATTTGGCAGCATAGTAAAAGAGGTTATGGAGGGGTCACCACATA
 
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rJMSF045J20+          ATCTTCTTGAATCTGTGGCTGAACACATTTCAACTACAACCCTGAGCAAATACCCCCAGG
                      ____________________________________________________________
consensus             ATCTTCTTGAATCTGTGGCTGAACACATTTCAACTACAACCCTGAGCAAATACCCCCAGG
 
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rJMSF045J20+          TAAATGCTGTGCGTGTTCAGGTCGGAAAGCCACATGTTGCAGTCCAAGGACCAGTCGGCT
                      ____________________________________________________________
consensus             TAAATGCTGTGCGTGTTCAGGTCGGAAAGCCACATGTTGCAGTCCAAGGACCAGTCGGCT
 
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rJMSF045J20+          ACTTGGGCGTTGAGATCATTAGATATCGAGGCATTGCCATATAAATCTGCCAAGGCTAAT
rJMSF042I18+                                                                GCTAAT
JMSF042I18-                                                                 GCTAAT
                      ____________________________________________________________
consensus             ACTTGGGCGTTGAGATCATTAGATATCGAGGCATTGCCATATAAATCTGCCAAGGCTAAT
 
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rJMSF045J20+          ATTCTGCTGGTCGATTCTTCACCGAAATCTATAGCAATGTGTGTTTTTATTGTATCATAA
rJMSF042I18+          ATTCTGCTGGTCGATTCTTCACCGAAATCTATA-CAATGTGTGTTTTTATTGTATCATAA
JMSF042I18-           ATTCTGCTGGTCGATTCTTCACCGAAATCTATA-CAATGTGTGTTTTTATTGTATCATAA
                      ____________________________________________________________
consensus             ATTCTGCTGGTCGATTCTTCACCGAAATCTATA-CAATGTGTGTTTTTATTGTATCATAA
 
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rJMSF045J20+          TTAAACTCTTCTTCATTACATTATATCGACGAAAC                         
rJMSF042I18+          TTAAACTCTTCTTCATTACATTATATCGACGAAACTTGTAGTTTGAATTGATTGATAATG
JMSF042I18-           TTAAACTCTTCTTCATTACATTATATCGACGAAACTTGTAGTTTGAATTGATTGATAATG
                      ____________________________________________________________
consensus             TTAAACTCTTCTTCATTACATTATATCGACGAAACTTGTAGTTTGAATTGATTGATAATG
 
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rJMSF042I18+          CCAAGTTTTCTGTTTGATGTCTTACATTGTCTTGTCAGAAAATTTCTAGGTTGG-TGAAG
JMSF042I18-           CCAAGTTTTCTGTTTGATGTCTTACATTGTCTTGTCAGAAAATTTCTAGGTTGGTTGAAG
                      ____________________________________________________________
consensus             CCAAGTTTTCTGTTTGATGTCTTACATTGTCTTGTCAGAAAATTTCTAGGTTGGTTGAAG
 
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rJMSF042I18+          AAGGCATTCAAAAATGC                                           
JMSF042I18-           AAGGCATTCAAAAATGCTATAACAACAATAACAATAAACATTCTAGGTTTAAAAAAAAAA
                      ____________________________________________________________
consensus             AAGGCATTCAAAAATGCTATAACAACAATAACAATAAACATTCTAGGTTTAAAAAAAAAA