Contig 008025:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF042D23Sequence701008025 (2)
JMSF052B11Sequence678008025 (2)ref|XP_003634219.1|8e-67PREDICTED: CBS domain-containing protein CBSCBSPB5 isoform X2 [Vitis vinifera] 865021618gb|KJB19827.1|3e-56hypothetical protein B456_003G120400 [Gossypium raimondii]

Alignment

This contig is upended


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JMSF052B11+                                                            CACAACAGGTA
                      ____________________________________________________________
consensus                                                              CACAACAGGTA
 
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JMSF052B11+           AATGTCTAAATTTTCCTTGTACCATTTTCTGCAAGGCTTCAACAGAAAGAGTGTCAGAAA
                      ____________________________________________________________
consensus             AATGTCTAAATTTTCCTTGTACCATTTTCTGCAAGGCTTCAACAGAAAGAGTGTCAGAAA
 
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JMSF052B11+           GTACAAAAACTGGATTTCTTGTCATAACCTTAGAAACAGGTGTTTCTTGAATATTAAGCT
                      ____________________________________________________________
consensus             GTACAAAAACTGGATTTCTTGTCATAACCTTAGAAACAGGTGTTTCTTGAATATTAAGCT
 
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JMSF052B11+           CACGAGCAATTACTCTAGTTGCAATATCCTTATCCGTCAAGATCCCACATAATAATGCGT
                      ____________________________________________________________
consensus             CACGAGCAATTACTCTAGTTGCAATATCCTTATCCGTCAAGATCCCACATAATAATGCGT
 
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JMSF052B11+           TTGAGTCTGTAAGCAATAATGCATCGACCCTACGGGCAGCCATACGACGGCAGGCTTCAT
                      ____________________________________________________________
consensus             TTGAGTCTGTAAGCAATAATGCATCGACCCTACGGGCAGCCATACGACGGCAGGCTTCAT
 
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JMSF052B11+           ATACAGTTGTTGTATCAGGTACAGTTAGGGCTTTTGACAGCCGCAATCTCTTCACTGTCC
                      ____________________________________________________________
consensus             ATACAGTTGTTGTATCAGGTACAGTTAGGGCTTTTGACAGCCGCAATCTCTTCACTGTCC
 
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JMSF052B11+           GCTCTCCTGTTAGTGCTATGGAGCGAACCGCAGAAAAAGACTTTCGGGAAACTGAATCGC
                      ____________________________________________________________
consensus             GCTCTCCTGTTAGTGCTATGGAGCGAACCGCAGAAAAAGACTTTCGGGAAACTGAATCGC
 
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JMSF052B11+           CCAACCCCCCTTCTTCGTTCTCCGCTGTTTTCTTCTTGGTCTGCAACAAGGAGCTGGTCG
JMSF042D23+                              CTCCGCTGTTTTCTTCTTGGTCTGCAACAAGGAGCTGGTCG
                      ____________________________________________________________
consensus             CCAACCCCCCTTCTTCGTTCTCCGCTGTTTTCTTCTTGGTCTGCAACAAGGAGCTGGTCG
 
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JMSF052B11+           ACGACAGGCTTCTCCTCGACGATCCTCCTCCTTGACTAGTCGTCATCTGGAAAATCAAGC
JMSF042D23+           ACGACAGGCTTCTCCTCGACGATCCTCCTCCTTGACTAGTCGTCATCTGGAAAATCAAGC
                      ____________________________________________________________
consensus             ACGACAGGCTTCTCCTCGACGATCCTCCTCCTTGACTAGTCGTCATCTGGAAAATCAAGC
 
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JMSF052B11+           AACGATGATGAATAGCTAAATGATCGAACAAAAGATCTTCAAAAAGAGATGGTGAATGTG
JMSF042D23+           AACGATGATGAATAGCTAAATGATCGAACAAAAGATCTTCAAAAAGAGATGGTGAATGTG
                      ____________________________________________________________
consensus             AACGATGATGAATAGCTAAATGATCGAACAAAAGATCTTCAAAAAGAGATGGTGAATGTG
 
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JMSF052B11+           GCGGGAAAATGCAGAAACGATAAAAAATAAACCCTAATAAATGGGAGGAAAGGGAGGAGT
JMSF042D23+           GCGGGAAAATGCAGAAACGATAAAAAATAAACCCTAATAAATGGGAGGAAAGGGAGGAGT
                      ____________________________________________________________
consensus             GCGGGAAAATGCAGAAACGATAAAAAATAAACCCTAATAAATGGGAGGAAAGGGAGGAGT
 
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JMSF052B11+           AGCTAGCGTTCGCGTTTCTGCCTGGAGCCGCCCCTCTCTCTGTCTCTATCTTTCTCTCTC
JMSF042D23+           AGCTAGCGTTCGCGTTTCTGCCTGGAGCCGCCCCTCTCTCTGTCTCTATCTTTCTCTCTC
                      ____________________________________________________________
consensus             AGCTAGCGTTCGCGTTTCTGCCTGGAGCCGCCCCTCTCTCTGTCTCTATCTTTCTCTCTC
 
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JMSF052B11+           TTCC                                                        
JMSF042D23+           TTCCTCCCTTTGAAAGGAATACGGAAACAATAGAAAATTATGGATGGCGTGATATATGGA
                      ____________________________________________________________
consensus             TTCCTCCCTTTGAAAGGAATACGGAAACAATAGAAAATTATGGATGGCGTGATATATGGA
 
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JMSF042D23+           CCTCAGCCAATAACGTTGTGCCACGTCTGCCACCTTTCCTTCGCCGAATATTGGTCCAAT
                      ____________________________________________________________
consensus             CCTCAGCCAATAACGTTGTGCCACGTCTGCCACCTTTCCTTCGCCGAATATTGGTCCAAT
 
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JMSF042D23+           TATATACTCCGTTTTAGATTAGACTGCACCCTGGCGAAGAGAGTAACTATAACGCAGCAA
                      ____________________________________________________________
consensus             TATATACTCCGTTTTAGATTAGACTGCACCCTGGCGAAGAGAGTAACTATAACGCAGCAA
 
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JMSF042D23+           TTGCATAAAAATATCGTCCGGAAAGCGGCAACAGGTCCGAAATCCTATTCCTAAATCCCC
                      ____________________________________________________________
consensus             TTGCATAAAAATATCGTCCGGAAAGCGGCAACAGGTCCGAAATCCTATTCCTAAATCCCC
 
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JMSF042D23+           TAATTCCAATAATTTAAAACCCTTAATCCCTAATCGTAATCCCCCAAGTCCCAACTCTAA
                      ____________________________________________________________
consensus             TAATTCCAATAATTTAAAACCCTTAATCCCTAATCGTAATCCCCCAAGTCCCAACTCTAA
 
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JMSF042D23+           TAATATTCTATCATTTCTATGAAGCATTTTGATTTGTTGCTGCAACTATACTATTTGATG
                      ____________________________________________________________
consensus             TAATATTCTATCATTTCTATGAAGCATTTTGATTTGTTGCTGCAACTATACTATTTGATG
 
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JMSF042D23+           CTTTGAGACTTCAAATGTGATCCTAGCTCTGCCACTGCAGCAAACCTTTCTTCCAACCCC
                      ____________________________________________________________
consensus             CTTTGAGACTTCAAATGTGATCCTAGCTCTGCCACTGCAGCAAACCTTTCTTCCAACCCC