| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF018M21 | Sequence | 474 | 008023 (8) | ref|XP_002265275.1| | 2e-37 | PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera] | 787 | 008023 (8) | ref|XP_009795959.1| | 9e-126 | PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Nicotiana |
| JMSF018N21 | Sequence | 496 | 008023 (8) | ref|XP_002265275.1| | 2e-43 | PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera] | 761 | 008023 (8) | ref|XP_009795959.1| | 3e-127 | PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Nicotiana |
| JMSF019N21 | Sequence | 746 | 008023 (8) | ref|XP_009795959.1| | 3e-125 | PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Nicotiana | |||||
| JMSF027G04 | Sequence | 627 | 008023 (8) | gb|AHM22923.1| | 1e-65 | indole-3-glycerol phosphate synthase [Nicotiana tabacum] | 693 | 008023 (8) | ref|XP_009795959.1| | 7e-100 | PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Nicotiana |
| JMSF042C09 | Sequence | 754 | 008023 (8) | ref|XP_002265275.1| | 1e-97 | PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera] | 688 | 024652 | ref|NP_001234785.1| | 6e-90 | hexose transporter protein [Solanum lycopersicum] emb|CAA09419.1| hexose transpo |
This contig is upended
. : . : . : . : . : . :
rJMSF027G04- TCAGCTGAAATAGCAAAAGCATTTTGTTTATACAA
____________________________________________________________
consensus TCAGCTGAAATAGCAAAAGCATTTTGTTTATACAA
. : . : . : . : . : . :
rJMSF027G04- CTAATAATTATTTGGGTATTTCACTGAGAGAGATAAGTAACCAAATTTGGGAACTTTAAG
rJMSF019N21- GAGAGAGATAAGTAACCAAATTTGGGAACTTTAAG
rJMSF018N21- GAGAGAGATAAGTAACCAAATTTGGGAACTTTAAG
rJMSF018M21- TAACCAAATTTGGGAACTTTAAG
____________________________________________________________
consensus CTAATAATTATTTGGGTATTTCACTGAGAGAGATAAGTAACCAAATTTGGGAACTTTAAG
. : . : . : . : . : . :
rJMSF027G04- GATTTAAGGTACTAGATACAACACAAAACTGTATAAGAACCTGTTCAAGGTTCAATTAAA
rJMSF019N21- GATTTAAGGTACTAGATACAACACAAAACTGTATAAGAACCTGTTCAAGGTTCAATTAAA
rJMSF018N21- GATTTAAGGTACTAGATACAACACAAAACTGTATAAGAACCTGTTCAAGGTTCAATTAAA
rJMSF018M21- GATTTAAGGTACTAGATACAACACAAAACTGTATAAGAACCTGTTCAAGGTTCAATTAAA
____________________________________________________________
consensus GATTTAAGGTACTAGATACAACACAAAACTGTATAAGAACCTGTTCAAGGTTCAATTAAA
. : . : . : . : . : . :
rJMSF027G04- CCCAAAGGCCCAAAGAGATACATAAGCCTTAGTCTTCTGGGATCTCAGCAGGAAATATCT
rJMSF019N21- CCCAAAGGCCCAAAGAGATACATAAGCCTTAGTCTTCTGGGATCTCAGCAGGAAATATCT
rJMSF018N21- CCCAAAGGCCCAAAGAGATACATAAGCCTTAGTCTTCTGGGATCTCAGCAGGAAATATCT
rJMSF018M21- CCCAAAGGCCCAAAGAGATACATAAGCCTTAGTCTTCTGGGATCTCAGCAGGAAATATCT
____________________________________________________________
consensus CCCAAAGGCCCAAAGAGATACATAAGCCTTAGTCTTCTGGGATCTCAGCAGGAAATATCT
. : . : . : . : . : . :
rJMSF027G04- TTACCAAATAGTTCAGAAATTCCTTTTGTAGGGTCTTGCTGTTTCACAATCGACTCTCCC
rJMSF019N21- TTACCAAATAGTTCAGAAATTCCTTTTGTAGGGTCTTGCTGTTTCACAATCGACTCTCCC
rJMSF018N21- TTACCAAATAGTTCAGAAATTCCTTTTGTAGGGTCTTGCTGTTTCACAATCGACTCTCCC
rJMSF018M21- TTACCAAATAGTTCAGAAATTCCTTTTGTAGGGTCTTGCTGTTTCACAATCGACTCTCCC
____________________________________________________________
consensus TTACCAAATAGTTCAGAAATTCCTTTTGTAGGGTCTTGCTGTTTCACAATCGACTCTCCC
. : . : . : . : . : . :
rJMSF027G04- ACTAAAACTGCTCTGACACCAGCTTCTTGTACATATGCAATATCAGCAGGAGTAAATAGT
rJMSF019N21- ACTAAAACTGCTCTGACACCAGCTTCTTGTACATATGCAATATCAGCAGGAGTAAATAGT
rJMSF018N21- ACTAAAACTGCTCTGACACCAGCTTCTTGTACATATGCAATATCAGCAGGAGTAAATAGT
rJMSF018M21- ACTAAAACTGCTCTGACACCAGCTTCTTGTACATATGCAATATCAGCAGGAGTAAATAGT
____________________________________________________________
consensus ACTAAAACTGCTCTGACACCAGCTTCTTGTACATATGCAATATCAGCAGGAGTAAATAGT
. : . : . : . : . : . :
rJMSF027G04- CCAGATTCCCCAACAACAATTATGCCCTTCTCACGGATCTTTTCCCCACGTTCTCCTTGA
rJMSF019N21- CCAGATTCCCCAACAACAATTATGCCCTTCTCACGGATCTTTTCCCCACGTTCTCCTTGA
rJMSF018N21- CCAGATTCCCCAACAACAATTATGCCCTTCTCACGGATCTTTTCCCCACGTTCTCCTTGA
rJMSF018M21- CCAGATTCCCCAACAACAATTATGCCCTTCTCACGGATCTTTTCCCCACGTTCTCCTTGA
____________________________________________________________
consensus CCAGATTCCCCAACAACAATTATGCCCTTCTCACGGATCTTTTCCCCACGTTCTCCTTGA
. : . : . : . : . : . :
rJMSF027G04- AGGAGTTTCTTTGTGTTGCTAATATCAACTTTGAAAGTTCCTAGGTCTCTGTTATTGATG
rJMSF019N21- AGGAGTTTCTTTGTGTTGCTAATATCAACTTTGAAAGTTCCTAGGTCTCTGTTATTGATG
rJMSF018N21- AGGAGTTTCTTTGTGTTGCTAATATCAACTTTGAAAGTTCCTAGGTCTCTGTTATTGATG
rJMSF018M21- AGGAGTTTCTTTGTGTTGCTAATATCAACTTTGAAAGTTCCTAGGTCTCTGTTATTGATG
____________________________________________________________
consensus AGGAGTTTCTTTGTGTTGCTAATATCAACTTTGAAAGTTCCTAGGTCTCTGTTATTGATG
. : . : . : . : . : . :
rJMSF027G04- CCAACCAGTTCAACCACATCTATTCCAAGCACACGATCCATCTCCCTCTCATCATGTACC
rJMSF019N21- CCAACCAGTTCAACCACATCTATTCCAAGCACACGATCCATCTCCCTCTCATCATGTACC
rJMSF018N21- CCAACCAGTTCAACCACATCTATTCCAAGCACACGATCCATCTCCCTCTCATCATGTACC
rJMSF018M21- CCAACCAGTTCAACCACATCTATTCCAAGCACACGATCCATCTCCCTCTCATCATGTACC
____________________________________________________________
consensus CCAACCAGTTCAACCACATCTATTCCAAGCACACGATCCATCTCCCTCTCATCATGTACC
. : . : . : . : . : . :
rJMSF027G04- TCAACAAGTGCAGTCATCCCAAGCAATTTGCAGATCTTAATCATATATTTTATATCAAGA
rJMSF019N21- TCAACAAGTGCAGTCATCCCAAGCAATTTGCAGATCTTAATCATATATTTTATATCAAGA
rJMSF018N21- TCAACAAGTGCAGTCATCCCAAGCAATTTGCAGATCTTAATCATATATTTTATATCAAGA
rJMSF018M21- TCAACAAGTGCAGTCATCCCAAGCAATTTGCAGATCTTAATCATATATTTTATATCAAGA
____________________________________________________________
consensus TCAACAAGTGCAGTCATCCCAAGCAATTTGCAGATCTTAATCATATATTTTATATCAAGA
. : . : . : . : . : . :
rJMSF027G04- TCAGGTAAAACAGCGGCAATCAAAAGAACTGCATCAGCCCCTTTGGTTCGAGCATAGTAN
rJMSF019N21- TCAGGTAAAACAGCGGCAATCAAAAGAACTGCATCAGCCCCTTTGGTTCGAGCATAGTAA
rJMSF018N21- TCAGGTAAAACAGCGGCAATCAAAAGAACTGCATCAGCCCCTTTGGTTCGAGCATAGTAA
rJMSF018M21- TCAGGTAAAACAGCGGCAATCAAAAGAACTGCATCAGCCCCTTTGGTTCGAGCATAGTAA
____________________________________________________________
consensus TCAGGTAAAACAGCGGCAATCAAAAGAACTGCATCAGCCCCTTTGGTTCGAGCATAGTAA
. : . : . : . : . : . :
rJMSF027G04- ATTTGCCATGCGTCTATNATAAATTCTTTGCACAACAAAGGACACGTCACTCCAGCAT
rJMSF019N21- ATTTGCCATGCGTCTATAATAAATTCTTTGCACAACAAAGGACACGTCACTCCAGCATTC
rJMSF018N21- ATTTGCCATGCGTCTATAATAAATTCTTTGCACAACAAAGGACACGTCACTCCAGCATTC
rJMSF018M21- ATTTGCCATGCGTCTATAATAAATTCTTTGCACAACAAAGGACACGTCACTCCAGCATTC
____________________________________________________________
consensus ATTTGCCATGCGTCTATAATAAATTCTTTGCACAACAAAGGACACGTCACTCCAGCATTC
. : . : . : . : . : . :
rJMSF019N21- CTTATAGCCTCAAGGTTTTCAAAGCTTCCCTTAAAATACTTCTCATCAGTCAAAACACTA
rJMSF018N21- CTTATAGCCTCAAGGTTTTCAAAGCTTCCCTTAAAATACTTCTCATCAGTCAAAACACTA
rJMSF018M21- CTTATAGCCTCAAGGTTTTCAAAGCTTCCCTTAAAATACTTCTCATCAGTCAAAACACTA
JMSF042C09+ TCCCTTAAAATACTTCTCATCAGTCAAAACACTA
____________________________________________________________
consensus CTTATAGCCTCAAGGTTTTCAAAGCTTCCCTTAAAATACTTCTCATCAGTCAAAACACTA
. : . : . : . : . : . :
rJMSF019N21- AGGCATGCTGCTCCACCTTTCTCATAAGCTTTGG
rJMSF018N21- AGGCATGCTGCTCCACCTTTCTCATAAGCTTTGGCAATTTCA
rJMSF018M21- AGGCATGCTGCTCCACCTTTCTCATAAGCTTTGGC-ATTTCAACAGGATCAAAATCTTCT
JMSF042C09+ AGGCATGCTGCTCCACCTTTCTCATAAGCTTTGGCAATTTCAACAGGATCAAAATCTTCT
____________________________________________________________
consensus AGGCATGCTGCTCCACCTTTCTCATAAGCTTTGGCAATTTCAACAGGATCAAAATCTTCT
. : . : . : . : . : . :
rJMSF018M21- CTTAATATCCCTCTGCTTG
JMSF027G04+ TCACTTCAGCAATCAAGCCAGGCAATCCA
JMSF042C09+ CTTAATATCCCTCTGCTTGGAGAAGCCTTCTTCACTTCAGCAATCAAGCCAGGCAATCCA
____________________________________________________________
consensus CTTAATATCCCTCTGCTTGGAGAAGCCTTCTTCACTTCAGCAATCAAGCCAGGCAATCCA
. : . : . : . : . : . :
JMSF027G04+ GTTCTAGAATAAGATGCCTTAAGAGCACCAACAAAATCTCGAGCAGGAGGTGCTTCCTCA
JMSF042C09+ GTTCTAGAATAAGATGCCTTAAGAGCACCAACAAAATCTCGAGCAGGAGGTGCTTCCTCA
____________________________________________________________
consensus GTTCTAGAATAAGATGCCTTAAGAGCACCAACAAAATCTCGAGCAGGAGGTGCTTCCTCA
. : . : . : . : . : . :
JMSF018N21+ ATCTCAGAAACTTCCTTGTCC
JMSF027G04+ AGTGCTTTCCTCAACGTGCCAAGATGTCTTCTCTCCTTCATCTCAGAAACTTCCTTGTCC
JMSF042C09+ AGTGCTTTCCTCAACGTGCCAAGATGTCTTCTCTCCTTCATCTCAGAAACTTCCTTGTCC
____________________________________________________________
consensus AGTGCTTTCCTCAACGTGCCAAGATGTCTTCTCTCCTTCATCTCAGAAACTTCCTTGTCC
. : . : . : . : . : . :
JMSF018N21+ TTGTTCCAAACAATCTCTTCTAGAATGTTCCGAGGTGTGTTCCCTTCGTTCTGCAACCGA
JMSF018M21+ TGTTCCAAACAATCTCTTCTAGAATGTTCCGAGGTGTGTTCCNTTCGTTCTGCAACCGA
JMSF027G04+ TTGTTCCAAACAATCTCTTCTAGAATGTTCCGAGGTGTGTTCCCTTCGTTCTGCAACCGA
JMSF042C09+ TTGTTCCAAACAATCTCTTCTAGAATGTTCCGAGGTGTGTTCCCTTCGTTCTGCAACCGA
____________________________________________________________
consensus TTGTTCCAAACAATCTCTTCTAGAATGTTCCGAGGTGTGTTCCCTTCGTTCTGCAACCGA
. : . : . : . : . : . :
JMSF018N21+ AACTCGAAAGGGCCAACGTAATGCAACGGCGGCCCTGTAAGCGGCCTTCTCCGAATCCTT
JMSF018M21+ AACTNGAAAGGGCCAACGTAATGCAACGGCGGCCCTGTAAGCGGCCTTCTCCGAATCCTT
JMSF027G04+ AACTCGAAAGGGCCAACGTAATGCAACGGCGGCCCTGTAAGCGGCCTTCTCCGAATCCTT
JMSF042C09+ AACTCGAAAGGGCCAACGTAATGCAACGGCGGCCCTGTAAGCGGCCTTCTCCGAATCCTT
____________________________________________________________
consensus AACTCGAAAGGGCCAACGTAATGCAACGGCGGCCCTGTAAGCGGCCTTCTCCGAATCCTT
. : . : . : . : . : . :
JMSF018N21+ ATACCCTGGTTAGCAGCAACCTCATCCTGGAGCCTCTGCACTTCCCATTCCTTGATTTTC
JMSF018M21+ ATACCCTGGTTAGCAGCAACCTCATCCTGGAGCCTCTGCACTTCCCATTCCTTGATTTTC
JMSF027G04+ ATACCCTGGTTAGCAGCAACCTCATCCTGGAGCCTCTGCACTTCCCATTCCTTGATTTTC
JMSF042C09+ ATACCCTGGTTAGCAGCAACCTCATCCTGGAGCCTCTGCACTTCCCATTCCTTGATTTTC
____________________________________________________________
consensus ATACCCTGGTTAGCAGCAACCTCATCCTGGAGCCTCTGCACTTCCCATTCCTTGATTTTC
. : . : . : . : . : . :
JMSF018N21+ AGGGCCTCTGCTTCCGATATATTCGATTCAGAAAGCGTTGCGGACTCTTCCTTCAAGTCA
JMSF018M21+ AGGGCCTCTGCTTCCGATATATTCGATTCAGAAAGCGTTGCGGACTCTTCCTTCAAGTCA
JMSF027G04+ AGGGCCTCTGCTTCCGATATATTCGATTCAGAAAGCGTTGCGGACTCTTCCTTCAAGTCA
JMSF042C09+ AGGGCCTCTGCTTCCGATATATTCGATTCAGAAAGCGTTGCGGACTCTTCCTTCAAGTCA
____________________________________________________________
consensus AGGGCCTCTGCTTCCGATATATTCGATTCAGAAAGCGTTGCGGACTCTTCCTTCAAGTCA
. : . : . : . : . : . :
JMSF018N21+ GGCTGTTGAGCTCGAATTGGAGAACAAGAGAGGGAAATGCGTTTCGGGTTTGACATGAGA
JMSF018M21+ GGCTGTTGAGCTCGAATTGGAGAACAAGAGAGGGAAATGCGTTTCGGGTTTGACATGAGA
JMSF027G04+ GGCTGTTGAGCTCGAATTGGAGAACAAGAGAGGGAAATGCGTTTCGGGTTTGACATGAGA
JMSF042C09+ GGCTGTTGAGCTCGAATTGGAGAACAAGAGAGGGAAATGCGTTTCGGGTTTGACATGAGA
____________________________________________________________
consensus GGCTGTTGAGCTCGAATTGGAGAACAAGAGAGGGAAATGCGTTTCGGGTTTGACATGAGA
. : . : . : . : . : . :
JMSF018N21+ GCCCCGGCACTGGAGAAGCCGAACCTTTTGGGTGTGAGATTGATTGGGGTTCGAAATGAG
JMSF018M21+ GCCCCGGCACTGGAGAAGCCGAACCTTTTGGGTGTGAGATTGATTGGGGTTCGAAATGAG
JMSF027G04+ GCCCCGGCACTGGAGAAGCCGAACCTTTTGGGTGTGAGATTGATTGGGGTTCGAAATGAG
JMSF042C09+ GCCCCGGCACTGGAGAAGCCGAACCTTTTGGGTGTGAGATTGATTGGGGTTCGAAATGAG
____________________________________________________________
consensus GCCCCGGCACTGGAGAAGCCGAACCTTTTGGGTGTGAGATTGATTGGGGTTCGAAATGAG
. : . : . : . : . : . :
JMSF018N21+ ACCGCCGGTCTTACCGTCGCCGCCGGTGCGGTGGTTCTGAATTGCAACGAAGCCTCCATC
JMSF018M21+ ACCGCCGGTCTTACCGTCGCCGCCGGTGCGGTGGTTCTGAATTGCAACGAAGCCTCCATC
JMSF027G04+ ACCGCCGGTCTTACCGTCGCCGCCGGTGCGGTGGTTCTGAATTGCAACGAAGCCTCCATC
JMSF042C09+ ACCGCCGGTCTTACCGTCGCCGCCGGTGCGGTGGTTCTGAATTGCAACGAAGCCTCCATC
____________________________________________________________
consensus ACCGCCGGTCTTACCGTCGCCGCCGGTGCGGTGGTTCTGAATTGCAACGAAGCCTCCATC
. : . : . : . : . : . :
JMSF018N21+ AGTGAAACTGGACAATGGAGCTGGGGAATTTGGATTTTTTTTAAATTATTTTTC
JMSF018M21+ AGTGAAACTGGACAATGGAGCTGGGGAATTTGGATTTTTTTTAAATTATTTTTC
JMSF027G04+ AGTGAAACTGGACAATGGAGCTGGGGAATTTGGATTTTTTTTAAATTATTTTTC
JMSF042C09+ AGTGAAACTGGACAATGGAGCTGGGGAATTTGGATTTTTTTTAAATTATTTTTCTCGTCC
____________________________________________________________
consensus AGTGAAACTGGACAATGGAGCTGGGGAATTTGGATTTTTTTTAAATTATTTTTCTCGTCC