Contig 008021:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-                                                    AATCAAGAGTGCTGTGGG
rJMSF030H14-                 TCCTTCTACAATATGAAAATCAAAATCAAAATCAAAATCAAGAGTGCTGTGGG
                      ____________________________________________________________
consensus                    TCCTTCTACAATATGAAAATCAAAATCAAAATCAAAATCAAGAGTGCTGTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          GATGGGGGGAGGGGTAGATACCAACTTTACACGTCCTTTCTCTTCCAGTAAAAATAAGAA
rJMSF030H14-          GATGGGGGGAGGGGTAGATACCAACTTTACACGTCCTTTCTCTTCCAGTAAAAATAAGAA
                      ____________________________________________________________
consensus             GATGGGGGGAGGGGTAGATACCAACTTTACACGTCCTTTCTCTTCCAGTAAAAATAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          ATAAAAAGAATAAGAAGAAATCCATTATGGATACCCTTGCCAGCTTACTACTACAAGGAA
rJMSF030H14-          ATAAAAAGAATAAGAAGAAATCCATTATGGATACCCTTGCCAGCTTACTACTACAAGGAA
                      ____________________________________________________________
consensus             ATAAAAAGAATAAGAAGAAATCCATTATGGATACCCTTGCCAGCTTACTACTACAAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          AACACATTAAAGAGGGGGTGTAAGAAACAATTCAACGGAATACCAAAATGGATCAAAGGG
rJMSF030H14-          AACACATTAAAGAGGGGGTGTAAGAAACAATTCAACGGAATACCAAAATGGATCAAAGGG
                      ____________________________________________________________
consensus             AACACATTAAAGAGGGGGTGTAAGAAACAATTCAACGGAATACCAAAATGGATCAAAGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          CGAAGAGATGGCACATAGAATTTTGAGATACTATGGCAAAGATGGATTATCAGAGGTGTC
rJMSF030H14-          CGAAGAGATGGCACATAGAATTTTGAGATACTATGGCAAAGATGGATTATCAGAGGTGTC
                      ____________________________________________________________
consensus             CGAAGAGATGGCACATAGAATTTTGAGATACTATGGCAAAGATGGATTATCAGAGGTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          TCGACTTGGTTTCTTTAAACAGCTCGGCTTCTTCCTCAAATCCCAACCAGAATTGTACTG
rJMSF030H14-          TCGACTTGGTTTCTTTAAACAGCTCGGCTTCTTCCTCAAATCCCAACCAGAATTGTACTG
                      ____________________________________________________________
consensus             TCGACTTGGTTTCTTTAAACAGCTCGGCTTCTTCCTCAAATCCCAACCAGAATTGTACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          AAGCAGGCACCCATAGAGAACAGAAAAGACCTCTCCTTTCTGTTATTTCTGCCTTCCAAT
rJMSF030H14-          AAGCAGGCACCCATAGAGAACAGAAAAGACCTCTCCTTTCTGTTATTTCTGCCTTCCAAT
                      ____________________________________________________________
consensus             AAGCAGGCACCCATAGAGAACAGAAAAGACCTCTCCTTTCTGTTATTTCTGCCTTCCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          CTATATCTTGTCAAAATCTTCGTCAAAACAATCATCCCCATCATCTGGTCCATCATCACT
rJMSF030H14-          CTATATCTTGTCAAAATCTTCGTCAAAACAATCATCCCCATCATCTGGTCCATCATCACT
                      ____________________________________________________________
consensus             CTATATCTTGTCAAAATCTTCGTCAAAACAATCATCCCCATCATCTGGTCCATCATCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          GTCCTCTCCCAAGAGGAACACATCCAAATCCTGATCAGAGGCTGACGAAGTTGTCTTCTT
rJMSF030H14-          GTCCTCTCCCAAGAGGAACACATCCAAATCCTGATCAGAGGCTGACGAAGTTGTCTTCTT
                      ____________________________________________________________
consensus             GTCCTCTCCCAAGAGGAACACATCCAAATCCTGATCAGAGGCTGACGAAGTTGTCTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          ACTTTTCTGGTCTTTTCCATCAACAGTAGTTTTAGAAGTGGTACCAGATGATGCATTGTC
rJMSF030H14-          ACTTTTCTGGTCTTTTCCATCAACAGTAGTTTTAGAAGTGGTACCAGATGATGCATTGTC
                      ____________________________________________________________
consensus             ACTTTTCTGGTCTTTTCCATCAACAGTAGTTTTAGAAGTGGTACCAGATGATGCATTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          CTCTGTCACCTCAGTCTTTACATTATCAGCAGATTTTAAATTTGCTTCTTCCATGTATCT
rJMSF030H14-          CTCTGTCACCTCAGTCTTTACATTATCAGCAGATTTTAAATTTGCTTCTTCCATGTATCT
                      ____________________________________________________________
consensus             CTCTGTCACCTCAGTCTTTACATTATCAGCAGATTTTAAATTTGCTTCTTCCATGTATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          CTTTTCATAAGGGGCTATATGGCTGTTAACTAGAATGAAGTAGATTCTCCAAAACTTCCT
rJMSF030H14-          CTTTTCATAAGGGGCTATATGGCTGTTAACTAGAATGAAGTAGATTCTCCAAAACTTCCT
JMSF042A05+                       GGCTATATGGCTGTTAACTAGAATGAAGTAGATTCTCCAAAACTTCCT
                      ____________________________________________________________
consensus             CTTTTCATAAGGGGCTATATGGCTGTTAACTAGAATGAAGTAGATTCTCCAAAACTTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042A05-          CTCTCTCATCACACGGGG                                          
rJMSF030H14-          CTCTCTCATCACACGGGGGCATAACTCATACCTTA                         
JMSF030H14+              TCTCATCACACGGGGGCATAACTCATACCTTAGTTTAGAGATTTCCTTCACTGATGT
JMSF042A05+           CTCTCTCATCACACGGGGGCATAACTCATACCTTAGTTTAGAGATTTCCTTCACTGATGT
                      ____________________________________________________________
consensus             CTCTCTCATCACACGGGGGCATAACTCATACCTTAGTTTAGAGATTTCCTTCACTGATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030H14+           GAGAACAAGTTTTGCATGTTTTTCCTGGAACTCTGTAAGATCCTGGCGAATATTAGAGAC
JMSF042A05+           GAGAACAAGTTTTGCATGTTTTTCCTGGAACTCTGTAAGATCCTGGCGAATATTAGAGAC
                      ____________________________________________________________
consensus             GAGAACAAGTTTTGCATGTTTTTCCTGGAACTCTGTAAGATCCTGGCGAATATTAGAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030H14+           TGTGGGAATGGAGGACATTTCTGAATCATCTTGTAGAGGAAAATCCTTGAATGTGTTCAA
JMSF042A05+           TGTGGGAATGGAGGACATTTCTGAATCATCTTGTAGAGGAAAATCCTTGAATGTGTTCAA
                      ____________________________________________________________
consensus             TGTGGGAATGGAGGACATTTCTGAATCATCTTGTAGAGGAAAATCCTTGAATGTGTTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030H14+           TGTAATCCCCTTAACGAACTCTCTCAACTCATCCGTAACACCAAATCTCTCGAGATCGGC
JMSF042A05+           TGTAATCCCCTTAACGAACTCTCTCAACTCATCCGTAACACCAAATCTCTCGAGATCGGC
                      ____________________________________________________________
consensus             TGTAATCCCCTTAACGAACTCTCTCAACTCATCCGTAACACCAAATCTCTCGAGATCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030H14+           CTCGGTGGCCGCAGCCGCAGCCGCCGCCGTTGTTTGAGTGGAGCCAGTCGACGACGAGTC
JMSF042A05+           CTCGGTGGCCGCAGCCGCAGCCGCCGCCGTTGTTTGAGTGGAGCCAGTCGACGACGAGTC
                      ____________________________________________________________
consensus             CTCGGTGGCCGCAGCCGCAGCCGCCGCCGTTGTTTGAGTGGAGCCAGTCGACGACGAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030H14+           GACAAGGTGAGAGATCCCGGTGGCTGGAATTTGAAACGTGATCTGCTCGGCGCGCTTGAG
JMSF042A05+           GACAAGGTGAGAGATCCCGGTGGCTGGAATTTGAAACGTGATCTGCTCGGCGCGCTTGAG
                      ____________________________________________________________
consensus             GACAAGGTGAGAGATCCCGGTGGCTGGAATTTGAAACGTGATCTGCTCGGCGCGCTTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030H14+           GGCGTCGACTTTGATCTCTTCCGCGCGCTTGGAAGCCTCGGCGACGATCTCCTTAGACCG
JMSF042A05+           GGCGTCGACTTTGATCTCTTCCGCGCGCTTGGAAGCCTCGGCGACGATCTCCTTAGACCG
                      ____________________________________________________________
consensus             GGCGTCGACTTTGATCTCTTCCGCGCGCTTGGAAGCCTCGGCGACGATCTCCTTAGACCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030H14+           CTTGGACGCTTCGGCGGCGATCTCTTTGGACCGCTTAGACGCCTCCAAAACAACGTCAGA
JMSF042A05+           CTTGGACGCTTCGGCGGCGATCTCTTTGGACCGCTTAGACGCCTCCAAAACAACGTCAGA
                      ____________________________________________________________
consensus             CTTGGACGCTTCGGCGGCGATCTCTTTGGACCGCTTAGACGCCTCCAAAACAACGTCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030H14+           CAGCTTGGCGGAGCCTCCAATTGTCAGCTCCTGCGAGCGCTTAGCAGCTTCCATGGTGAA
JMSF042A05+           CAGCTTGGCGGAGCCTCCAATTGTCAGCTCCTGCGAGCGCTTAGCAGCTTCCATGGTGAA
                      ____________________________________________________________
consensus             CAGCTTGGCGGAGCCTCCAATTGTCAGCTCCTGCGAGCGCTTAGCAGCTTCCATGGTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030H14+           CTCCTGCGATCGCTTCGCGGCTTCCTCGGCAAAGCTCCGAGCCTTTAGCCAGAAATCCAT
JMSF042A05+           CTCCTGCGATCGCTTCGCGGCTTCCTCGGCAAAGCTCCGAGCCTTTAGCCAGAAATCCAT
                      ____________________________________________________________
consensus             CTCCTGCGATCGCTTCGCGGCTTCCTCGGCAAAGCTCCGAGCCTTTAGCCAGAAATCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030H14+           TGTCGGCTGTGAGAGCTCACTTGTATCGAATTTC                          
JMSF042A05+           TGTCGGCTGTGAGAGCTCACTTGTATCGAATTTCAAGTATATACTGAATTTTCAATGACC
                      ____________________________________________________________
consensus             TGTCGGCTGTGAGAGCTCACTTGTATCGAATTTCAAGTATATACTGAATTTTCAATGACC