Contig 008017:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF041J19-                                                         AAGAGCNTTGCCT
                      ____________________________________________________________
consensus                                                            AAGAGCNTTGCCT
 
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rJMSF041J19-          TATCCATTTTCAAGATTGTCTTTTATATTCCTGCATGTTTCTAGGGGTACCATTTTTGCT
rJMSF002A14-                      AGATTGTCTTTTATATTCCTGCATGTTTCTAGGGGTACCATTTTTGCT
                      ____________________________________________________________
consensus             TATCCATTTTCAAGATTGTCTTTTATATTCCTGCATGTTTCTAGGGGTACCATTTTTGCT
 
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rJMSF041J19-          GGAATTCCAGCATAAACATAGTTCTCAGTAATAGCTTACACGATTTTCANCTGCTTATCT
rJMSF002A14-          GGAATTCCAGCATAAACATAGTTCTCAGTAATAGCTTACACGATTTTCAACTGCTTATCT
                      ____________________________________________________________
consensus             GGAATTCCAGCATAAACATAGTTCTCAGTAATAGCTTACACGATTTTCAACTGCTTATCT
 
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rJMSF041J19-          CCAAACTGGTCGATTACGCAACCTTCCTGGTTAGTTGATCCCTCGATGTGCTCTCGAATA
rJMSF002A14-          CCAAACTGGTCGATTACGCAACCTTCCTGGTTAGTTGATCCCTCGATGTGCTCTCGAATA
                      ____________________________________________________________
consensus             CCAAACTGGTCGATTACGCAACCTTCCTGGTTAGTTGATCCCTCGATGTGCTCTCGAATA
 
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rJMSF041J19-          TCTTGTCAGCATTTCCAACCTCGAACCCATCTCGCCTGTGAAATTCCTTTATCTCTTCGC
rJMSF002A14-          TCTTGTCAGCATTTCCAACCTCGAACCCATCTCGCCTGTGAAATTCCTTTATCTCTTCGC
                      ____________________________________________________________
consensus             TCTTGTCAGCATTTCCAACCTCGAACCCATCTCGCCTGTGAAATTCCTTTATCTCTTCGC
 
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rJMSF041J19-          GAGGTAAATCTTTGTACTCAGGCAAGACAAGACGTTCGGCAAATTCNATGTAAGAACATG
rJMSF002A14-          GAGGTAAATCTTTGTACTCAGGCAAGACAAGACGTTCGGCAAATTCAATGTAAGAACATG
                      ____________________________________________________________
consensus             GAGGTAAATCTTTGTACTCAGGCAAGACAAGACGTTCGGCAAATTCAATGTAAGAACATG
 
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rJMSF041J19-          GGACCAATTCTGTTGAGCCGTCTGAAAATTGAAAAGGGGCAGAATCTGCCACGGTTGAAC
rJMSF002A14-          GGACCAATTCTGTTGAGCCGTCTGAAAATTGAAAAGGGGCAGAATCTGCCACGGTTGAAC
                      ____________________________________________________________
consensus             GGACCAATTCTGTTGAGCCGTCTGAAAATTGAAAAGGGGCAGAATCTGCCACGGTTGAAC
 
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rJMSF041J19-          TTTGCAGCAGAAGACCATCGGGGCTCACTTTCAAAATACCCCCTTCGGAGTTCAGCTTAA
rJMSF002A14-          TTTGCAGCAGAAGACCATCGGGGCTCACTTTCAAAATACCCCCTTCGGAGTTCAGCTTAA
                      ____________________________________________________________
consensus             TTTGCAGCAGAAGACCATCGGGGCTCACTTTCAAAATACCCCCTTCGGAGTTCAGCTTAA
 
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rJMSF041J19-          AATCATTCTCCTCAATGAACCGATTGAAACTGTCAATACTTGCCAAGTTTGATCTCAAGC
rJMSF002A14-          AATCATTCTCCTCAATGAACCGATTGAAACTGTCAATACTTGCCAAGTTTGATCTCAAGC
                      ____________________________________________________________
consensus             AATCATTCTCCTCAATGAACCGATTGAAACTGTCAATACTTGCCAAGTTTGATCTCAAGC
 
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rJMSF041J19-          GATGAGTAGATATAGTCACGTGATTCAAAGCATAGCCNTTGACAAGTGTCCAAGCAGCAT
rJMSF002A14-          GATGAGTAGATATAGTCACGTGATTCAAAGCATAGCCATTGACAAGTGTCCAAGCAGCAT
                      ____________________________________________________________
consensus             GATGAGTAGATATAGTCACGTGATTCAAAGCATAGCCATTGACAAGTGTCCAAGCAGCAT
 
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rJMSF041J19-          ATTCGCTTTCACTAGCCAATTNCTGGAATTCTTCA                         
rJMSF002A14-          ATTCGCTTTCACTAGCCAATTTCTGGAATTCTTCAAATGAGGGCTTTTCCCATGTGAGGC
JMSF041J19+                                                                GTGAGGC
                      ____________________________________________________________
consensus             ATTCGCTTTCACTAGCCAATTTCTGGAATTCTTCAAATGAGGGCTTTTCCCATGTGAGGC
 
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rJMSF002A14-          AATCCAATGCACTGGCAAGAGGTGCATGCCCATATCCATTGCCAGATATGTTAGTATACT
JMSF041J19+           AATCCAATGCACTGGCAAGAGGTGCATGCCCATATCCATTGCCAGATATGTTAGTATACT
                      ____________________________________________________________
consensus             AATCCAATGCACTGGCAAGAGGTGCATGCCCATATCCATTGCCAGATATGTTAGTATACT
 
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rJMSF002A14-          TTCTAATTATTTCCTGAGCTCCTGGACTCATTTGATCAACAAGGAGTTCTGATATGAAAA
JMSF041J19+           TTCTAATTATTTCCTGAGCTCCTGGACTCATTTGATCAACAAGGAGTTCTGATATGAAAA
                      ____________________________________________________________
consensus             TTCTAATTATTTCCTGAGCTCCTGGACTCATTTGATCAACAAGGAGTTCTGATATGAAAA
 
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rJMSF002A14-          TTCTCGGCAAGG                                                
JMSF041J19+           TTCTCGGCAAGGGCCCACTAACACGAGTTCCATTCTCAGAATGTAACAACTTCGGAGGAG
                      ____________________________________________________________
consensus             TTCTCGGCAAGGGCCCACTAACACGAGTTCCATTCTCAGAATGTAACAACTTCGGAGGAG
 
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JMSF041J19+           CGAACCAGAAGGCTTTCAACTTCTTTGCAGGGAACCTCAGCTCTTCCCGTTTCTCGTAAC
                      ____________________________________________________________
consensus             CGAACCAGAAGGCTTTCAACTTCTTTGCAGGGAACCTCAGCTCTTCCCGTTTCTCGTAAC
 
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JMSF041J19+           CAAAGTCCAAGAAGAATTTCGCCATGGAATCAATCCCATGCCCATTTACCCCAAAGGTTC
                      ____________________________________________________________
consensus             CAAAGTCCAAGAAGAATTTCGCCATGGAATCAATCCCATGCCCATTTACCCCAAAGGTTC
 
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JMSF041J19+           TGAAAGCAAAATGGTCATAGCAAATTCGATCACCATCTGCAGATCGAACGAGCTCCAAAA
                      ____________________________________________________________
consensus             TGAAAGCAAAATGGTCATAGCAAATTCGATCACCATCTGCAGATCGAACGAGCTCCAAAA
 
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JMSF041J19+           TGGCTTTAGCAGAAGGATTTTTGTTCAGGTAAACTGCTTCCATACTAGCCAATACACTCC
                      ____________________________________________________________
consensus             TGGCTTTAGCAGAAGGATTTTTGTTCAGGTAAACTGCTTCCATACTAGCCAATACACTCC
 
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JMSF041J19+           TGAAGAACGATTCACTTCCCTGCAAAGAAGGAGCTTTGAAGCCATTTCCATCCTGGGTTA
                      ____________________________________________________________
consensus             TGAAGAACGATTCACTTCCCTGCAAAGAAGGAGCTTTGAAGCCATTTCCATCCTGGGTTA
 
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JMSF002A14+                                                                    GGA
JMSF041J19+           GGGAAGCAGAGAGGGTTGAGAAGCAATTTTTCTCTCTATTTAAAACAAGGCCCTTTTGGA
                      ____________________________________________________________
consensus             GGGAAGCAGAGAGGGTTGAGAAGCAATTTTTCTCTCTATTTAAAACAAGGCCCTTTTGGA
 
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JMSF002A14+           GGTATATTCCAGGTGAGTTTACTGGGAATTTGAAAGAGGAAAGACGAAGAATGAGGAAAG
JMSF041J19+           GGTATATTCCAGGTGAGTTTACTGGGAATTTGAAAGAGGAAAGACGAAGAATGAGGAAAG
                      ____________________________________________________________
consensus             GGTATATTCCAGGTGAGTTTACTGGGAATTTGAAAGAGGAAAGACGAAGAATGAGGAAAG
 
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JMSF002A14+           CTGGCGGATTTGAGGAAAGAAGAGGAAGAAGAAGAACAATACAGGGAAAACAAAGAAGAA
JMSF041J19+           CTGGCGGATTTGAGGAAAGAAGAGGAAGAAGAAGAACAATACAGGGAAAACAAAGAAGAA
                      ____________________________________________________________
consensus             CTGGCGGATTTGAGGAAAGAAGAGGAAGAAGAAGAACAATACAGGGAAAACAAAGAAGAA
 
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JMSF002A14+           GGGAATCTGATCATGATTTCCATACAAATAATTTGATCTCTTCTTTGTTTCTTTCGTCTT
JMSF041J19+           GGGAATCTGATCATGATTTCCATACAAATAATTTGATCTCTTCTTTGTTTCTTTCGTCTT
                      ____________________________________________________________
consensus             GGGAATCTGATCATGATTTCCATACAAATAATTTGATCTCTTCTTTGTTTCTTTCGTCTT
 
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JMSF002A14+           CTCTATTGACGATGAAAGAAACAATTTCCTT                             
JMSF041J19+           CTCTATTGACGATGAAAGAAACAATTTCCTTAGTAAAACCTAGAATCCTCTGGTCATCTC
                      ____________________________________________________________
consensus             CTCTATTGACGATGAAAGAAACAATTTCCTTAGTAAAACCTAGAATCCTCTGGTCATCTC