Contig 008012:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025C20Sequence498008012 (4)ref|XP_009588391.1|1e-46PREDICTED: lysine--tRNA ligase-like [Nicotiana tomentosiformis]724007086 (4)ref|XP_004241405.1|3e-99PREDICTED: lysine--tRNA ligase [Solanum lycopersicum]
JMFF027F17Sequence502008012 (4)ref|XP_009588391.1|3e-47PREDICTED: lysine--tRNA ligase-like [Nicotiana tomentosiformis]812007086 (4)ref|XP_004241405.1|2e-115PREDICTED: lysine--tRNA ligase [Solanum lycopersicum]
JMSF018G17Sequence438008012 (4)ref|XP_009588391.1|4e-37PREDICTED: lysine--tRNA ligase-like [Nicotiana tomentosiformis]755007086 (4)emb|CAC12821.1|4e-94lysyl-tRNA synthetase [Nicotiana tabacum]
JMSF041D10Sequence763008012 (4)ref|XP_006347288.1|3e-106PREDICTED: lysine--tRNA ligase-like [Solanum tuberosum]633007086 (4)ref|XP_004241405.1|3e-101PREDICTED: lysine--tRNA ligase [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF041D10+                            AGATATGCCGGACCTCCATGTTCAGCATCAAATCCAAATAGCG
                      ____________________________________________________________
consensus                              AGATATGCCGGACCTCCATGTTCAGCATCAAATCCAAATAGCG
 
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JMSF041D10+           TTGTCTGTAGCGTGTTTCCTGATCTCTCAATATGTAACTATCTGGATTTNTACCACTTCC
                      ____________________________________________________________
consensus             TTGTCTGTAGCGTGTTTCCTGATCTCTCAATATGTAACTATCTGGATTTNTACCACTTCC
 
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JMSF041D10+           AGGGACCCACACATCAGTTTTCTTGGTTGTTTCAGTTTGGGCACCCTTTTGTCGAGGCAT
                      ____________________________________________________________
consensus             AGGGACCCACACATCAGTTTTCTTGGTTGTTTCAGTTTGGGCACCCTTTTGTCGAGGCAT
 
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JMSF041D10+           CATATGGAGACAATGAGATAACACTACAAATGATTTTGGAAAAATACTGAGCTCTCCCCT
                      ____________________________________________________________
consensus             CATATGGAGACAATGAGATAACACTACAAATGATTTTGGAAAAATACTGAGCTCTCCCCT
 
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JMFF025C20+                                                  TCCACGCTTCACAGCAGAGTG
JMFF027F17+                                                  TCCACGCTTCACAGCAGAGTG
JMSF041D10+           TTTTGTCTTTCCTGGAGATCCAACAACACCAACAATATCTCCACGCTTCACAGCAGAGTG
                      ____________________________________________________________
consensus             TTTTGTCTTTCCTGGAGATCCAACAACACCAACAATATCTCCACGCTTCACAGCAGAGTG
 
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JMFF025C20+           AAGTTTAATAAACCCCTCCTCAACCAACTCAGATTCCCTTGCATTGGCCATAACTTGAAC
JMFF027F17+           AAGTTTAATAAACCCCTCCTCAACCAACTCAGATTCCCTTGCATTGGCCATAACTTGAAC
JMSF018G17+                                                        GGCCATAACTTGAAC
JMSF041D10+           AAGTTTAATAAACCCCTCCTCACCCAACTCAGATTCCCTTGCATTGGCCATAACTTGAAC
                      ____________________________________________________________
consensus             AAGTTTAATAAACCCCTCCTCAACCAACTCAGATTCCCTTGCATTGGCCATAACTTGAAC
 
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JMFF025C20+           TTTGGCACCCTCAGCGTGTAAATCATAGAAAAGCAGCTTGGACGAAGAGGCACGTTTGAT
JMFF027F17+           TTTGGCACCCTCAGCGTGTAAATCATAGAAAAGCAGCTTGGACGAAGAGGCACGTTTGAT
JMSF018G17+           TTTGGCACCCTCAGCGTGTAAATCATAGAAAAGCAGCTTGGACGAAGAGGCACGTTTGAT
JMSF041D10+           TTTGGCACCCTCAGCGTGTAAATCATAGAAAAGCAGCTTGGACGAAGAGGCACGTTTGAT
                      ____________________________________________________________
consensus             TTTGGCACCCTCAGCGTGTAAATCATAGAAAAGCAGCTTGGACGAAGAGGCACGTTTGAT
 
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JMFF025C20+           CATAATTCGACCAGCTATAGAGACTTGGTCTTCACGGTGCTCCCCGCTTTCCAATCCCTG
JMFF027F17+           CATAATTCGACCAGCTATAGAGACTTGGTCTTCACGGTGCTCCCCGCTTTCCAATCCCTG
JMSF018G17+           CATAATTCGACCAGCTATAGAGACTTGGTCTTCACGGTGCTCCCCGCTTTCCAATCCCTG
JMSF041D10+           CATAATTCGACCAGCTATAGAGACTTGGTCTTCACGGTGCTCCCCGCTTTCCAATCCCTG
                      ____________________________________________________________
consensus             CATAATTCGACCAGCTATAGAGACTTGGTCTTCACGGTGCTCCCCGCTTTCCAATCCCTG
 
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JMFF025C20+           ATATTTCTCAACGTACTCCGGAATAGAGATGGTGACCTGGAATTTGTGAGGGTACGGGTT
JMFF027F17+           ATATTTCTCAACGTACTCCGGAATAGAGATGGTGACCTGGAATTTGTGAGGGTACGGGTT
JMSF018G17+           ATATTTCTCAACGTACTCCGGAATAGAGATGGTGACCTGGAATTTGTGAGGGTACGGGTT
JMSF041D10+           ATATATCTCAACATACTCCGGAATAGAGATGGTGACCTGGAATTTGTGAGGGTACGGGTT
                      ____________________________________________________________
consensus             ATATTTCTCAACGTACTCCGGAATAGAGATGGTGACCTGGAATTTGTGAGGGTACGGGTT
 
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JMFF025C20+           CGCCCCGGCTTCCTTCTGAGCCGTCAGTGCTTTAAACCTGTTCTCAAAGTATTGCGTTGG
JMFF027F17+           CGCCCCGGCTTCCTTCTGAGCCGTCAGTGCTTTAAACCTGTTCTCAAAGTATTGCGTTGG
JMSF018G17+           CGCCCCGGCTTCCTTCTGAGCCGTCAGTGCTTTCAACCTGTTCTCAAAGTATTGCGTTGG
JMSF041D10+           CGCCCCGGCTTCCTTCTGAGCCGTCAGTGCTTTCAACCTGTTCTCAAAGTATTGCGTTGG
                      ____________________________________________________________
consensus             CGCCCCGGCTTCCTTCTGAGCCGTCAGTGCTTTCAACCTGTTCTCAAAGTATTGCGTTGG
 
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JMFF025C20+           ATCCATTTCGTCTTCAGCTGCAGCGGCGTTCTGCCGCTGCTGCTGTGCGTTCTTGTTATC
JMFF027F17+           ATCCATTTCGTCTTCAGCTGCAGCGGCGTTCTGCCGCTGCTGCTGTGCGTTCTTGTTATC
JMSF018G17+           ATCCATTTCGTCTTCAGCTGCAGCGGCGTTCTGCCGCTGCTGCTGTGCGTTCTTGTTATC
JMSF041D10+           ATCCATTTCGTCTTCAGCTGCAGCGGCGTTCTGCCGCTGCTGCTGTGCGTTCTTGTTATC
                      ____________________________________________________________
consensus             ATCCATTTCGTCTTCAGCTGCAGCGGCGTTCTGCCGCTGCTGCTGTGCGTTCTTGTTATC
 
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JMFF025C20+           GGATTTCCCCATGTTAACAAGAACAGATTGAGGGCTTGATAGAGCAAATGAAGCAGCGCC
JMFF027F17+           GGATTTCCCCATGTTAACAAGAACAGATTGAGGGCTTGATAGAGCAAATGAAGCAGCGCC
JMSF018G17+           GGATTTCCCCATGTTAACAAGAACAGATTGAGGGCTTGATAGAGCAAATGAAGCAGCGCC
JMSF041D10+           GGATTTCCCCATGTTAACAAGAACAGATTGAGGGCTTGATAGAGCAAATGAAGCAGCGCC
                      ____________________________________________________________
consensus             GGATTTCCCCATGTTAACAAGAACAGATTGAGGGCTTGATAGAGCAAATGAAGCAGCGCC
 
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JMFF025C20+           GGCGATTTTGCGAGGAAGAAAGGGAAAGAGTGGCGTTAGAGTGGCGGAATAGA       
JMFF027F17+           GGCGATTTTGCGAGGAAGAAAGGGAAAGAGTGGCGTTAGAGTGGCGGAATAGA       
JMSF018G17+           GGCGATTTTGCGAGGAAGAAAGGGAAAGAGTGGCGTTAGAGTGGCGGAATAGA       
JMSF041D10+           GGCGATTTTGCGAGGAAGAAAGGGAAAGAGTGGCGTTAGAGTGGCGGAATAGATACCAGC
                      ____________________________________________________________
consensus             GGCGATTTTGCGAGGAAGAAAGGGAAAGAGTGGCGTTAGAGTGGCGGAATAGATACCAGC