Contig 008011:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041D01Sequence603008011 (2)ref|XP_009803360.1|2e-88PREDICTED: quinone oxidoreductase-like protein 2 homolog [Nicotiana sylvestris]764008011 (2)ref|XP_009600683.1|1e-91PREDICTED: quinone oxidoreductase-like protein 2 homolog [Nicotiana tomentosifo

Alignment

This contig is upended


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rJMSF041D01-                         AACTTGATTATTTTCAAGGGATGTCCTTGGAGCAGTGCTGGCAGG
                      ____________________________________________________________
consensus                            AACTTGATTATTTTCAAGGGATGTCCTTGGAGCAGTGCTGGCAGG
 
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rJMSF041D01-          AGCTCCATGACTACATGGTGAAACATTTGCAGATACATCTGTGCTTCCATGAAAACATCA
                      ____________________________________________________________
consensus             AGCTCCATGACTACATGGTGAAACATTTGCAGATACATCTGTGCTTCCATGAAAACATCA
 
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rJMSF041D01-          TAAGTAAGACGTTCCGCGTTTCATCTCGAATGTTTACCTAAAGCTTAGATTGCCCGACGG
                      ____________________________________________________________
consensus             TAAGTAAGACGTTCCGCGTTTCATCTCGAATGTTTACCTAAAGCTTAGATTGCCCGACGG
 
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rJMSF041D01-          TCTTGCCATCGCCAAAAGTAAGCAACACCTTCCCGATCGCCTTCCTATCTTTGAGGGCAG
                      ____________________________________________________________
consensus             TCTTGCCATCGCCAAAAGTAAGCAACACCTTCCCGATCGCCTTCCTATCTTTGAGGGCAG
 
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rJMSF041D01-          AGAAAGCGAGATTGGCCTCTGATGGGCCGAAAGTATGAGAGATGTTTATGGTAATCAAGC
                      ____________________________________________________________
consensus             AGAAAGCGAGATTGGCCTCTGATGGGCCGAAAGTATGAGAGATGTTTATGGTAATCAAGC
 
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rJMSF041D01-          CCCTCGACAACCAAGATAATAGCTCGTTGAGAGAATCTTCAAGCACAGCTGGGCGGTGTA
                      ____________________________________________________________
consensus             CCCTCGACAACCAAGATAATAGCTCGTTGAGAGAATCTTCAAGCACAGCTGGGCGGTGTA
 
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rJMSF041D01-          TCTTATGGCTTCCCCAGTAGAGTCCGTGTATTGTCCAGTTCTTAACGAGAGCAATATTTG
                      ____________________________________________________________
consensus             TCTTATGGCTTCCCCAGTAGAGTCCGTGTATTGTCCAGTTCTTAACGAGAGCAATATTTG
 
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rJMSF041D01-          CTGGGATGACGGGCACTTGTCCACTCGCAAACCCAATAACCAAAATCTGTGCTCCCCAAT
                      ____________________________________________________________
consensus             CTGGGATGACGGGCACTTGTCCACTCGCAAACCCAATAACCAAAATCTGTGCTCCCCAAT
 
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rJMSF041D01-          TCAACAGTTTCAAGCTATCTTTCGAAAGCTTTCCCCCTACTGGATCATACAAGACATCAA
                      ____________________________________________________________
consensus             TCAACAGTTTCAAGCTATCTTTCGAAAGCTTTCCCCCTACTGGATCATACAAGACATCAA
 
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rJMSF041D01-          CCCCCCTGAGCTTTCTTGACTTTAGAAACGCCCTAACATTCTCAATAACGTTATCCTTGC
                      ____________________________________________________________
consensus             CCCCCCTGAGCTTTCTTGACTTTAGAAACGCCCTAACATTCTCAATAACGTTATCCTTGC
 
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rJMSF041D01-          TCACATCAACTACGTGATCAGCACCCATCGACTTCAAAAAATCCACCTTCTCAGCTCCCC
JMSF041D01+                                                                    CCC
                      ____________________________________________________________
consensus             TCACATCAACTACGTGATCAGCACCCATCGACTTCAAAAAATCCACCTTCTCAGCTCCCC
 
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rJMSF041D01-          TCGCAGCAGCAATAACAGTAGCTCCGCAAACCTTTCCAATCTGTACTGCTGAAACCCCAA
JMSF041D01+           TCGCAGCAGCAATAACAGTAGCTCCGCAAACCTTTCCAATCTGTACTGCTGAAACCCCAA
                      ____________________________________________________________
consensus             TCGCAGCAGCAATAACAGTAGCTCCGCAAACCTTTCCAATCTGTACTGCTGAAACCCCAA
 
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rJMSF041D01-          CACCTCCAGCTGCTCCAAGAACCAGCAAAACCTGGTTCTGACGCAACTGCGCCCTGTAA 
JMSF041D01+           CACCTCCAGCTGCTCCAAGAACCAGCAAAACCTGGTTCTGACGCAACTGCGCCCTGTAAG
                      ____________________________________________________________
consensus             CACCTCCAGCTGCTCCAAGAACCAGCAAAACCTGGTTCTGACGCAACTGCGCCCTGTAAG
 
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JMSF041D01+           CTAGGGCTACATGTGATGTTCCATATGCCACAGGAAGTGCAGCAGCCGCAACTAGATCAC
                      ____________________________________________________________
consensus             CTAGGGCTACATGTGATGTTCCATATGCCACAGGAAGTGCAGCAGCCGCAACTAGATCAC
 
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JMSF041D01+           AACCATCAGGCACTCGAAACAAATCGGATTCATCGGCGACGATGAATTGGGCAAATGAAC
                      ____________________________________________________________
consensus             AACCATCAGGCACTCGAAACAAATCGGATTCATCGGCGACGATGAATTGGGCAAATGAAC
 
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JMSF041D01+           CAAGCGCGGCAAAAGAGCACACACGGTCGCCGACCCTGAATTTAGTGACTTTGGGGCCGA
                      ____________________________________________________________
consensus             CAAGCGCGGCAAAAGAGCACACACGGTCGCCGACCCTGAATTTAGTGACTTTGGGGCCGA
 
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JMSF041D01+           CGGCGTCGACGATTCCCGAGTAATCGGAGCCAAGGATGAACGGCAACGGAGGCTTCTCTT
                      ____________________________________________________________
consensus             CGGCGTCGACGATTCCCGAGTAATCGGAGCCAAGGATGAACGGCAACGGAGGCTTCTCTT
 
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JMSF041D01+           GGTACAACCCTTGGACTTGCAGGTAATTGGCGAAGTTCAAGCTCGTGGCTTTGACCCGGA
                      ____________________________________________________________
consensus             GGTACAACCCTTGGACTTGCAGGTAATTGGCGAAGTTCAAGCTCGTGGCTTTGACCCGGA
 
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JMSF041D01+           CTCGGACTGAGTTCGGCGAGACGAGTTCCGGGATCGGATGGGATGTTGAATAGGTGAGTG
                      ____________________________________________________________
consensus             CTCGGACTGAGTTCGGCGAGACGAGTTCCGGGATCGGATGGGATGTTGAATAGGTGAGTG
 
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JMSF041D01+           GAGAATCGTCCGAGTTCGGTCGGATTGTTGGGTCGCCGATCTTTCTGCATACTAAAGCTT
                      ____________________________________________________________
consensus             GAGAATCGTCCGAGTTCGGTCGGATTGTTGGGTCGCCGATCTTTCTGCATACTAAAGCTT
 
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JMSF041D01+           CCATTTTTTGTAATCTTTTTCTTGGGAAACGAACAGTGCTATGCTAAGAATTGCTATCTC
                      ____________________________________________________________
consensus             CCATTTTTTGTAATCTTTTTCTTGGGAAACGAACAGTGCTATGCTAAGAATTGCTATCTC