Contig 008010:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF041C11-                                                  AATATGGCAAATCATGAAGC
                      ____________________________________________________________
consensus                                                     AATATGGCAAATCATGAAGC
 
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rJMSF041C11-          CAGATCCTAGGAGCAAATAATCAGTACACGACTATGAGAACAAGGATAGTTCAAACTTCA
JMSF041C11+                     GAGCAAATAATCAGTACACGACTATGAGAACAAGGATAGTTCAAACTTCA
                      ____________________________________________________________
consensus             CAGATCCTAGGAGCAAATAATCAGTACACGACTATGAGAACAAGGATAGTTCAAACTTCA
 
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rJMSF041C11-          ACGCCACGCTCTTGACAGCTAGCTCTCCGTTTTCCTGGCGCTAGCTTCAGAGAGCAATGG
JMFN006I09+                                                               AGCATTGG
JMSF041C11+           ACGCCACGCTCTTGACAGCTAGCTCTCCGTTTTCCTGGCGCTAGCTTCAGAGAGCAATGG
                      ____________________________________________________________
consensus             ACGCCACGCTCTTGACAGCTAGCTCTCCGTTTTCCTGGCGCTAGCTTCAGAGAGCAATGG
 
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rJMSF041C11-          TTCAAGTTCTCCTTTCCGGTATAGCTTAATGGTATCTGTACAACCTCCAATGTGTTTGCC
JMFN006I09+           TTCAAGTTCTCCTTTCCGGTATAGCTTAATGGTATCTGTACAACCTCCAATGTGTTTGCC
JMSF041C11+           TTCAAGTTCTCCTTTCCGGTATAGCTTAATGGTATCTGTACAACCTCCAATGTGTTTGCC
                      ____________________________________________________________
consensus             TTCAAGTTCTCCTTTCCGGTATAGCTTAATGGTATCTGTACAACCTCCAATGTGTTTGCC
 
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rJMSF041C11-          CCCAATAAACACATTCGGAACAGTATGCTGCCCTGTGAGCCTTTCCAGCACCTTCTGCAA
JMFN006I09+           CCCAATAAACACATTCGGAACAGTATGCTGCCCTGTGAGCCTTTCCAGCACCTTCTGCAA
JMSF041C11+           CCCAATAAACACATTCGGAACAGTATGCTGCCCTGTGAGCCTTTCCAGCACCTTCTGCAA
                      ____________________________________________________________
consensus             CCCAATAAACACATTCGGAACAGTATGCTGCCCTGTGAGCCTTTCCAGCACCTTCTGCAA
 
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rJMSF041C11-          TTGCGGTCCTTGGGGACCCATTTCATCCAATTCAATAACAAGCGGCTCCACTCCAAGTCT
JMFN006I09+           TTGCGGTCCTTGGGGACCCATTTCATCCAATTCAATAACAAGCGGCTCCACTCCAAGTCT
JMSF041C11+           TTGCGGTCCTTGGGGACCCATTTCATCCAATTCAATAACAAGCGGCTCCACTCCAAGTCT
                      ____________________________________________________________
consensus             TTGCGGTCCTTGGGGACCCATTTCATCCAATTCAATAACAAGCGGCTCCACTCCAAGTCT
 
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rJMSF041C11-          CTTGAACAAAACCTTCACTTCAGATGAGTACGAGCACCAAGTCTTGGAGTATACAACGAC
JMFN006I09+           CTTGAACAAAACCTTCACTTCAGATGAGTACGAGCACCAAGTCTTGGAGTATACAACGAC
JMSF041C11+           CTTGAACAAAACCTTCACTTCAGATGAGTACGAGCACCAAGTCTTGGAGTATACAACGAC
                      ____________________________________________________________
consensus             CTTGAACAAAACCTTCACTTCAGATGAGTACGAGCACCAAGTCTTGGAGTATACAACGAC
 
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rJMSF041C11-          GGGATTCTCGCCGACAGTCCTCTTGACGCTCTCCTCCATCCGGGACCCGAACGAGCCCGA
JMFN006I09+           GGGATTCTCGCCGACAGTCCTCTTGACGCTCTCCTCCATCCGGGACCCGAACGAGCCCGA
JMSF041C11+           GGGATTCTCGCCGACAGTCCTCTTGACGCTCTCCTCCATCCGGGACCCGAACGAGCCCGA
                      ____________________________________________________________
consensus             GGGATTCTCGCCGACAGTCCTCTTGACGCTCTCCTCCATCCGGGACCCGAACGAGCCCGA
 
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rJMSF041C11-          CACGGCTCGAATCTGGGTCGGGCACTGTTTTCTTGAGGAAAACTTGGGG           
JMFN006I09+           CACGGCTCGAATCTGGGTCGGGCACTGTTTTCTTGAGGAAAACTTGGGGAATCTCGATTC
JMSF041C11+           CACGGCTCGAATCTGGGTCGGGCACTGTTTTCTTGAGGAAAACTTGGGGAATCTCGATTC
                      ____________________________________________________________
consensus             CACGGCTCGAATCTGGGTCGGGCACTGTTTTCTTGAGGAAAACTTGGGGAATCTCGATTC
 
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JMFN006I09+           GGTTCCAAAGAATCCGAGTTTGGAGGTGCAATTGGAGGAAGTTGAAAGGCTACGGCAATG
JMSF041C11+           GGTTCCAAAGAATCCGAGTTTGGAGGTGCAATTGGAGGAAGTTGAAAGGCTACGGCAATG
                      ____________________________________________________________
consensus             GGTTCCAAAGAATCCGAGTTTGGAGGTGCAATTGGAGGAAGTTGAAAGGCTACGGCAATG
 
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JMFN006I09+           GAATAGAGCGCGAGGGCGAGGGGAAGGAGCGGGAGAAAGCGAGGCGAAGACTCTGGTCAA
JMSF041C11+           GAATAGAGCGCGAGGGCGAGGGGAAGGAGCGGGAGAAAGCGAGGCGAAGACTCTGGTCAA
                      ____________________________________________________________
consensus             GAATAGAGCGCGAGGGCGAGGGGAAGGAGCGGGAGAAAGCGAGGCGAAGACTCTGGTCAA
 
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JMFN006I09+           GTTCGTAGTAGAAGTAGGAGTGGAAATCCCCGCCATTGATGGCCCAATCGAAGTTTCTGG
JMSF041C11+           GTTCGTAGTAGAAGTAGGAGTGGAAATCCCCGCCATTGATGGCCCAATCGAAGTTTCTGG
                      ____________________________________________________________
consensus             GTTCGTAGTAGAAGTAGGAGTGGAAATCCCCGCCATTGATGGCCCAATCGAAGTTTCTGG
 
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JMFN006I09+           TTAGTTATTATGGAGTTTTAGCTTCGTTTTCTTGAGGTTTTGGGGTCAGTAGAAAAATTT
JMSF041C11+           TTAGTTATTATGGAGTTTTAGCTTCGTTTTCTTGAGGTTTTGGGGTCAGTAGAAAAATTT
                      ____________________________________________________________
consensus             TTAGTTATTATGGAGTTTTAGCTTCGTTTTCTTGAGGTTTTGGGGTCAGTAGAAAAATTT
 
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JMFN006I09+           GGGTTCGCAGCTTTCTG                                           
JMSF041C11+           GGGTTCGCAGCTTTCTGGTTTGAATCGGCGAATCAGAATCCTCTGTGCGTGCCAGCCTTA
                      ____________________________________________________________
consensus             GGGTTCGCAGCTTTCTGGTTTGAATCGGCGAATCAGAATCCTCTGTGCGTGCCAGCCTTA