Contig 008007:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M04+                                                            GAGGGAAGTA
JMSF040M04-                                                             GAGGGAAGTA
                      ____________________________________________________________
consensus                                                               GAGGGAAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M04+          TACTACAGGCTGTGGCTGTTGGGACGAGGATGGGGCGAGGTGGCTGTGGCGTCAAGGATG
JMSF040M04-           TACTACAGGCTGTGGCTGTTGGGACGAGGATGGGGCGAGGTGGCTGTGGCGTCAAGGATG
                      ____________________________________________________________
consensus             TACTACAGGCTGTGGCTGTTGGGACGAGGATGGGGCGAGGTGGCTGTGGCGTCAAGGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M04+          CGGCCGGGCTCGCGAAGCTGTGGCTGTGGAGGATGCGGTTAGGCGAGGCGACGCTGTGGC
JMSF040M04-           CGGCCGGGCTCGCGAAGCTGTGGCTGTGGAGGATGCGGTTAGGCGAGGCGACGCTGTGGC
                      ____________________________________________________________
consensus             CGGCCGGGCTCGCGAAGCTGTGGCTGTGGAGGATGCGGTTAGGCGAGGCGACGCTGTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M04+          TGTGGCGGCGAGTATGCGGAGACGCGAGGCGTAGCTGTGGCTGTGGCGACAACACTTGGG
JMSF040M04-           TGTGGCGGCGAGTATGCGGAGACGCGAGGCGTAGCTGTGGCTGTGGCGACAACACTTGGG
                      ____________________________________________________________
consensus             TGTGGCGGCGAGTATGCGGAGACGCGAGGCGTAGCTGTGGCTGTGGCGACAACACTTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M04+          GTGTGTATACACATTAAGCTTGGTGCCCTTGTATCTTATATGCTTCCTTTGCCTCCTTCA
JMSF040M04-           GTGTGTATACACATTAAGCTTGGTGCCCTTGTATCTTATATGCTTCCTTTGCCTCCTTCA
                      ____________________________________________________________
consensus             GTGTGTATACACATTAAGCTTGGTGCCCTTGTATCTTATATGCTTCCTTTGCCTCCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M04+          TATGCTGCGATTAATTGCGGCGAGGCTGGGCTGTGGCGGCGACGGCGAGGCTAGGTATTC
JMSF040M04-           TATGCTGCGATTAATTGCGGCGAGGCTGGGCTGTGGCGGCGACGGCGAGGCTAGGTATTC
                      ____________________________________________________________
consensus             TATGCTGCGATTAATTGCGGCGAGGCTGGGCTGTGGCGGCGACGGCGAGGCTAGGTATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M04+          GAGGGCGGGGCGAGGGCTGTGCCGAGGCGCTGGAGGCTAGCTAGGCTCTGGCGACAACAC
JMSF040M04-           GAGGGCGGGGCGAGGGCTGTGCCGAGGCGCTGGAGGCTAGCTAGGCTCTGGCGACAACAC
                      ____________________________________________________________
consensus             GAGGGCGGGGCGAGGGCTGTGCCGAGGCGCTGGAGGCTAGCTAGGCTCTGGCGACAACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M04+          TACCCTTCCTCCCTTCCTTCCAACGTCTACACTTCCTGCCCGACTGGGGCTGCCCTGTTT
JMSF040M04-           TACCCTTCCTCCCTTCCTTCCAACGTCTACACTTCCTGCCCGACTGGGGCTGCCCTGTTT
                      ____________________________________________________________
consensus             TACCCTTCCTCCCTTCCTTCCAACGTCTACACTTCCTGCCCGACTGGGGCTGCCCTGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M04+          CCTCCTCCTCACCGTGTAAGGTATTTCTCTTATATGCCTTTTCCTCATTCATTTGGATTT
JMSF040M04-           CCTCCTCCTCACCGTGTAAGGTATTTCTCTTATATGCCTTTTCCTCATTCATTTGGATTT
                      ____________________________________________________________
consensus             CCTCCTCCTCACCGTGTAAGGTATTTCTCTTATATGCCTTTTCCTCATTCATTTGGATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M04+          TTTATTTTGCACTTATATCTACTGGAGTTGTTCTGCTCACTTTTCGCCGAGGGTAGCCGG
JMSF040M04-           TTTATTTTGCACTTATATCTACTGGAGTTGTTCTGCTCACTTTTCGCCGAGGGTAGCCGG
                      ____________________________________________________________
consensus             TTTATTTTGCACTTATATCTACTGGAGTTGTTCTGCTCACTTTTCGCCGAGGGTAGCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M04+          CTTGTGCCCCACTT                                              
JMSF040M04-           CTTGTGCCCCACTTTATTTATTTGTTTGTGGTTACCGAAACCCATTTCCCAAAAAAAAAA
                      ____________________________________________________________
consensus             CTTGTGCCCCACTTTATTTATTTGTTTGTGGTTACCGAAACCCATTTCCCAAAAAAAAAA