Contig 008002:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+                                                     TCTCAGATGATGAGTGGA
JMSF039M21+                                                      CTCAGATGATGAGTGGA
                      ____________________________________________________________
consensus                                                       TCTCAGATGATGAGTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+           ATTCCATAAACACACATTTCAATCCAAAGTTCCAATTTTTTATGGGAACATTCCAATAGA
JMSF039M21+           ATTCCATAAACACACATTTCAATCCAAAGTTCCAATTTTTTATGGGAACATTCCAATAGA
                      ____________________________________________________________
consensus             ATTCCATAAACACACATTTCAATCCAAAGTTCCAATTTTTTATGGGAACATTCCAATAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+           ATTATATCAAAACTTTCAATCTGAAACACCAAAACAGTATTCTAAATTCAAGTCCGGTAT
JMSF039M21+           ATTATATCAAAACTTTCAATCTGAAACACCAAAACAGTATTCTAAATTCAAGTCCGGTAT
                      ____________________________________________________________
consensus             ATTATATCAAAACTTTCAATCTGAAACACCAAAACAGTATTCTAAATTCAAGTCCGGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+           CAGACTCATCACAATCCAGACCCAAATCTGCATCTTAAAACGAAATACCTAAATTGCCTC
JMSF039M21+           CAGACTCATCACAATCCAGACCCAAATCTGCATCTTAAAACGAAATACCTAAATTGCCTC
                      ____________________________________________________________
consensus             CAGACTCATCACAATCCAGACCCAAATCTGCATCTTAAAACGAAATACCTAAATTGCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+           ATCAACAAATCACGACAAAATTACATAGCTATACAATAAAAAA-CATACCTGAGCGGCGG
JMSF039M21+           ATCAACAAATCACGACAAAATTACATAGCTATACAATAAAAAACCATACCTGAGCGGCGG
                      ____________________________________________________________
consensus             ATCAACAAATCACGACAAAATTACATAGCTATACAATAAAAAACCATACCTGAGCGGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+           AGGTCCCAGTGTGAATGGCAGCCCCGGATCCGTACACTGCTCCATATTCCACTCCCTGAG
JMSF039M21+           AGGTCCCAGTGTGAATGGCAGCCCCGGATCCGTACACTGCTCCATATTCCACTCCCTGAG
                      ____________________________________________________________
consensus             AGGTCCCAGTGTGAATGGCAGCCCCGGATCCGTACACTGCTCCATATTCCACTCCCTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+           GTTGTGGCGGCGGGGGGTAATAAGAATACTGGTACTGGGCGGCGGCTGCTGGGTCAGATT
JMSF039M21+           GTTGTGGCGGCGGGGGGTAATAAGAATACTGGTACTGGGCGGCGGCTGCTGGGTCAGATT
                      ____________________________________________________________
consensus             GTTGTGGCGGCGGGGGGTAATAAGAATACTGGTACTGGGCGGCGGCTGCTGGGTCAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+           GCGGTTGCGGCGGAAACGGTGCCGCGGGCGGGTGTGTAGAGGTGGTTGGTTCCTGCTGGG
JMSF039M21+           GCGGTTGCGGCGGAAACGGTGCCGCGGGCGGGTGTGTAGAGGTGGTTGGTTCCTGCTGGG
                      ____________________________________________________________
consensus             GCGGTTGCGGCGGAAACGGTGCCGCGGGCGGGTGTGTAGAGGTGGTTGGTTCCTGCTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+           GCTGCTGGTAATAGGCAGTGGAGTAGTCATAGGCCGCTTGCTGCGCAGCATCGTAGTATA
JMSF039M21+           GCTGCTGGTAATAGGCAGTGGAGTAGTCATAGGCCGCTTGCTGCGCAGCATCGTAGTATA
                      ____________________________________________________________
consensus             GCTGCTGGTAATAGGCAGTGGAGTAGTCATAGGCCGCTTGCTGCGCAGCATCGTAGTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+           CGTACTGATAGGAGGGCGGATAGTAAGCATAGGTTGATTGATCGGGTTCGTATGTATACG
JMSF039M21+           CGTACTGATAGGAGGGCGGATAGTAAGCATAGGTTGATTGATCGGGTTCGTATGTATACG
                      ____________________________________________________________
consensus             CGTACTGATAGGAGGGCGGATAGTAAGCATAGGTTGATTGATCGGGTTCGTATGTATACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+           AGGGAGCTTGGATTTGTACAGACGAGAGTGTGTTGTATGATTCTGAGGAAATCTGCTCCG
JMSF039M21+           AGGGAGCTTGGATTTGTACAGACGAGAGTGTGTTGTATGATTCTGAGGAAATCTGCTCCG
                      ____________________________________________________________
consensus             AGGGAGCTTGGATTTGTACAGACGAGAGTGTGTTGTATGATTCTGAGGAAATCTGCTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L02+           GGCGATGAGGATTCTGGGATGGATCCATGGGTTCCA                        
JMSF039M21+           GGCGATGAGGATTCTGGGATGGATCCATGGGTTCCATGCGATTCCCTTCTACTGTCGTTC
                      ____________________________________________________________
consensus             GGCGATGAGGATTCTGGGATGGATCCATGGGTTCCATGCGATTCCCTTCTACTGTCGTTC