Contig 007997:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN019I06Sequence579007997 (3)ref|XP_010253994.1|1e-38PREDICTED: transcription factor-like protein DPB isoform X3 [Nelumbo nucifera]
JMFS122H10Sequence573007997 (3)ref|XP_010253994.1|4e-18PREDICTED: transcription factor-like protein DPB isoform X3 [Nelumbo nucifera]
JMSF039G09Sequence273007997 (3)

Alignment

This contig is upended


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JMFN019I06+                                      GTTCTTCCTTTGCTTTCCACTTTCTCACATAGT
                      ____________________________________________________________
consensus                                        GTTCTTCCTTTGCTTTCCACTTTCTCACATAGT
 
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JMFN019I06+           TTCATGCTAAACTGCCGCAGTCCTCTACCACTCTTATCGCCTCCCACTGCTCGCTGGCCT
JMFS122H10+                                             TATCGCCTCCCACTGCTCGCTGGCCT
                      ____________________________________________________________
consensus             TTCATGCTAAACTGCCGCAGTCCTCTACCACTCTTATCGCCTCCCACTGCTCGCTGGCCT
 
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JMFN019I06+           CTTTTCTTCTTCCCAGCAGCACTGCGTTGAGATCCGGCATCATCACCATGAATGTCAAGG
JMFS122H10+           C-TTTCTTCTTCCCAGCAGCACTGCGTTGAGATCCGGCATCATCACCATGAATGTCAAGG
                      ____________________________________________________________
consensus             CTTTTCTTCTTCCCAGCAGCACTGCGTTGAGATCCGGCATCATCACCATGAATGTCAAGG
 
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JMFN019I06+           CTATCTAGCCTAGCAAAAGTGGTCTCACTGGCTGGAGTCGCCATGGCAGCCTCACTCCGG
JMFS122H10+           CTATCTAGCCTAGCAAAAGTGGTCTCACTGGCTGGAGTCGCCATGGCAGCCTCACTCCGG
                      ____________________________________________________________
consensus             CTATCTAGCCTAGCAAAAGTGGTCTCACTGGCTGGAGTCGCCATGGCAGCCTCACTCCGG
 
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JMFN019I06+           CTTGACGGCGACCCAACACTGCCGCTGGTGGACACAGATTGAGCCGAAAACGTGGTGCCC
JMFS122H10+           CTTGACGGCGACCCAACACTGCCGCTGGTGGACACAGATTGAGCCGAAAACGTGGTGCCC
                      ____________________________________________________________
consensus             CTTGACGGCGACCCAACACTGCCGCTGGTGGACACAGATTGAGCCGAAAACGTGGTGCCC
 
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JMFN019I06+           CATGACCTGGTAACGCCGCTGTTGCCTCCAATCGACGGGTTTTTCTCCCCATCTTCCCGG
JMFS122H10+           CATGACCTGGTAACGCCGCTGTTGCCTCCAATCGACGGGTTTTTCTCCCCATCTTCCCGG
                      ____________________________________________________________
consensus             CATGACCTGGTAACGCCGCTGTTGCCTCCAATCGACGGGTTTTTCTCCCCATCTTCCCGG
 
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JMFN019I06+           TTATTCACCATCCCCGCCAAAAATTCATCAAAAACCCTGCTCGATTTTTAGTCTCCCAGC
JMFS122H10+           TTATTCACCATCCCCGCCAAAAATTCATCAAAAACCCTGCTCGATTTTCAGTCTCCCAGC
                      ____________________________________________________________
consensus             TTATTCACCATCCCCGCCAAAAATTCATCAAAAACCCTGCTCGATTTTTAGTCTCCCAGC
 
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JMFN019I06+           TTGAATTAAGCCATAAACTCACAACACCAACGCAAAAATCCCAGCTAAAATCAACAGATT
JMFS122H10+           TTGAATTAAGCCATAAACTCACAACACCAACGCAAAAATCCCAGCTAAAATCAACAGATT
                      ____________________________________________________________
consensus             TTGAATTAAGCCATAAACTCACAACACCAACGCAAAAATCCCAGCTAAAATCAACAGATT
 
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JMFN019I06+           TCTCGAATTTTGAGACACTCCCAGAATTTCTTAAATTAAAAAAAAAAAAAAATCAACGAA
JMFS122H10+           TCTCGAATTTTGAGACACTCCCAGAATTTCTTAAATTAAAAAAAAAAAAAAATCAACGAA
JMSF039G09+                            CTCCCCGAATTTTTTNAATTNAAAAAAAAAAAAAATCAACGAA
                      ____________________________________________________________
consensus             TCTCGAATTTTGAGACACTCCCAGAATTTCTTAAATTAAAAAAAAAAAAAAATCAACGAA
 
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JMFN019I06+           AATTGGGGAGCTGTCAGTTAAAAGAGCCTACTTCTTGAGTGGGAAAAAAATGAACAAAAA
JMFS122H10+           AATTGGGGAGCTGTCAGTTAAAAGAGCCTACTTCTTGAGTGGGAAAAAAATGAACAAAAA
JMSF039G09+           AATTGGGGAGCTGTCAGTTAAAAGAGCCTACTTCTTGAGTGGGAAAAAAATGAACAAAAA
                      ____________________________________________________________
consensus             AATTGGGGAGCTGTCAGTTAAAAGAGCCTACTTCTTGAGTGGGAAAAAAATGAACAAAAA
 
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JMFN019I06+           CAGAAA                                                      
JMFS122H10+           CAGAAATGGGGTCTGCAGGGGAAACGATGAAACATAGGGATTTAAATTGCACAGAGGACA
JMSF039G09+           CAGAAATGGGGTCTGCAGGGGAAACGATGAAACATAGGGATTTAAATTGCACAGAGGACA
                      ____________________________________________________________
consensus             CAGAAATGGGGTCTGCAGGGGAAACGATGAAACATAGGGATTTAAATTGCACAGAGGACA
 
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JMFS122H10+           GAGGTTTA                                                    
JMSF039G09+           GAGGTTTAGCGGGACATTTGTTCTTAAATATGCTACACGACGGTGGGTGTGGTTTCTATC
                      ____________________________________________________________
consensus             GAGGTTTAGCGGGACATTTGTTCTTAAATATGCTACACGACGGTGGGTGTGGTTTCTATC