Contig 007991:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016G13Sequence513007991 (3)ref|XP_009789753.1|3e-25PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic789002818 (3)ref|XP_009608074.1|3e-81PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic
JMSF023L03Sequence636007991 (3)ref|XP_009789753.1|4e-25PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic
JMSF038K16Sequence671007991 (3)ref|XP_009608074.1|5e-29PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic892002818 (3)ref|XP_009608074.1|5e-138PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic

Alignment

This contig is upended


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JMSF038K16+                                                            CTTATCATAAG
                      ____________________________________________________________
consensus                                                              CTTATCATAAG
 
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JMSF023L03+                                        TTGAAGGCAGCTCTGTCCATCTCCATAAGCT
JMSF038K16+           CATCATCTTCACCATACTCTTCCATTGATTTGAAGGCAGCTCTGTCCATCTCCATAAGCT
                      ____________________________________________________________
consensus             CATCATCTTCACCATACTCTTCCATTGATTTGAAGGCAGCTCTGTCCATCTCCATAAGCT
 
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JMSF023L03+           CAACCCTATTTCTTTCTTCAACTCTAGGGTTGTCATTATTAGGTTTTAGCAGCGACTTCT
JMSF038K16+           CAACCCTATTTCTTTCTTCAACTCTAGGGTTGTCATTATTAGGTTTTAGCAGCGACTTCT
                      ____________________________________________________________
consensus             CAACCCTATTTCTTTCTTCAACTCTAGGGTTGTCATTATTAGGTTTTAGCAGCGACTTCT
 
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JMSF023L03+           TCACAGTTCTCGATTGAATTTGAATTTTCTCACCACCAGATTTCGGCGACATAGAATCTG
JMSF016G13+                                      TCTCACCACCAGATTTCGGCGACATAGAATCTG
JMSF038K16+           TCACAGTTCTCGATTGAATTTGAATTTTCTCACCACCAGATTTCGGCGACATAGAATCTG
                      ____________________________________________________________
consensus             TCACAGTTCTCGATTGAATTTGAATTTTCTCACCACCAGATTTCGGCGACATAGAATCTG
 
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JMSF023L03+           AGAGGGCCTTTTTCTTTTCCACAGGACGCGATTGCCGTCCCGGTTCCCCAGAATCACGGT
JMSF016G13+           AGAGGGCCTTTTTCTTTTCCACAGGACGCGATTGCCGTCCCGGTTCCCCAGAATCACGGT
JMSF038K16+           AGAGGGCCTTTTTCTTTTCCACAGGACGCGATTGCCGTCCCGGTTCCCCAGAATCACGGT
                      ____________________________________________________________
consensus             AGAGGGCCTTTTTCTTTTCCACAGGACGCGATTGCCGTCCCGGTTCCCCAGAATCACGGT
 
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JMSF023L03+           TTTGTCCGACTCTTTCACTTCGGTCACCAACCGTTTTCTTATTTTCTTTAACGGACTCCA
JMSF016G13+           TTTGTCCGACTCTTTCACTTCGGTCACCAACCGTTTTCTTATTTTCTTTAACGGACTCCA
JMSF038K16+           TTTGTCCGACTCTTTCACTTCGGTCACCAACCGTTTTCTTATTTTCTTTAACGGACTCCA
                      ____________________________________________________________
consensus             TTTGTCCGACTCTTTCACTTCGGTCACCAACCGTTTTCTTATTTTCTTTAACGGACTCCA
 
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JMSF023L03+           TAACTTTCAAGTACTCATCGAAAGAAGGCTTGAAATCCAGCTCTTTTTTGTCGATTATAG
JMSF016G13+           TAACTTTCAAGTACTCATCGAAAGAAGGCTTGAAATCCAGCTCTTTTTTGTCGATTATAG
JMSF038K16+           TAACTTTCAAGTACTCATCGAAAGAAGGCTTGAAATCCAGCTCTTTTTTGTCGATTATAG
                      ____________________________________________________________
consensus             TAACTTTCAAGTACTCATCGAAAGAAGGCTTGAAATCCAGCTCTTTTTTGTCGATTATAG
 
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JMSF023L03+           CGTTACCCAATGAGCAAGCGATTCTTACGGGGCCGATACTCGTACTTTGCTTCTTCAGCC
JMSF016G13+           CGTTACCCAATGAGCAAGCGATTCTTACGGGGCCGATACTCGTACTTTGCTTCTTCAGCC
JMSF038K16+           CGTTACCCAATGAGCAAGCGATTCTTACGGGGCCGATACTCGTACTTTGCTTCTTCAGCC
                      ____________________________________________________________
consensus             CGTTACCCAATGAGCAAGCGATTCTTACGGGGCCGATACTCGTACTTTGCTTCTTCAGCC
 
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JMSF023L03+           GGGACCTCTCGATTGGAACGGCATAAATGGGTCTTCCAGTAATCGTAAAACAAGGACATC
JMSF016G13+           GGGACCTCTCGATTGGAACGGCATAAATGGGTCTTCCAGTAATCGTAAAACAAGGACATC
JMSF038K16+           GGGACCTCTCGATTGGAACGGCATAAATGGGTCTTCCAGTAATCGTAAAACAAGGACATC
                      ____________________________________________________________
consensus             GGGACCTCTCGATTGGAACGGCATAAATGGGTCTTCCAGTAATCGTAAAACAAGGACATC
 
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JMSF023L03+           GGATGAAATTTGAGCCCAAAATGCCATGAAATTCAATGGAAGAAGAGGGTGAGTTTAGAG
JMSF016G13+           GGATGAAATTTGAGCCCAAAATGCCATGAAATTCAATGGAAGAAGAGGGTGAGTTTAGAG
JMSF038K16+           GGATGAAATTTGAGCCCAAAATGCCATGAAATTCAATGGAAGAAGAGGGTGAGTTTAGAG
                      ____________________________________________________________
consensus             GGATGAAATTTGAGCCCAAAATGCCATGAAATTCAATGGAAGAAGAGGGTGAGTTTAGAG
 
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JMSF023L03+           CCTGTGTGGTAAGAATGGCTGACACCATTGCTTCTGTTCACAGAAACATGAGAAGTCCAA
JMSF016G13+           CCTGTGTGGTAAGAATGGCTGACACCATTGCTTCTGTTCACAGAAACATGAGAAGTCCAA
JMSF038K16+           CCTGTGTGGTAAGAATGGCTGACACCATTGCTTCTGTTCACAGAAACATGAGAAGTCCAA
                      ____________________________________________________________
consensus             CCTGTGTGGTAAGAATGGCTGACACCATTGCTTCTGTTCACAGAAACATGAGAAGTCCAA
 
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JMSF023L03+           TTCCTTTGTCTACTTCGTCGTTTCTTTTCTTCTGGAGTACAATTTCCAGCAGTTC     
JMSF016G13+           TTCCTTTGTCTACTTCGTCGTTTCTTTTCTTCTGGAGTACAATTTCCAGCAGTTC     
JMSF038K16+           TTCCTTTGTCTACTTCGTCGTTTCTTTTCTTCTGGAGTACAATTTCCAGCAGTTCAGTCC
                      ____________________________________________________________
consensus             TTCCTTTGTCTACTTCGTCGTTTCTTTTCTTCTGGAGTACAATTTCCAGCAGTTCAGTCC