Contig 007988:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008A12Sequence227007988 (2)704012694 (2)gb|KDP34191.1|3e-50hypothetical protein JCGZ_07762 [Jatropha curcas]
JMSF038C09Sequence647007988 (2)ref|XP_009770568.1|3e-78PREDICTED: probable tocopherol cyclase, chloroplastic [Nicotiana sylvestris]925012694 (2)ref|XP_009367482.1|2e-96PREDICTED: tocopherol cyclase, chloroplastic-like [Pyrus x bretschneideri] ref|X

Alignment

This contig is upended


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JMSF038C09+                        CCTGAGGAGGAACTTCCTTATTTGGAGGCCTGGCAGCTGTTTGGGCA
                      ____________________________________________________________
consensus                          CCTGAGGAGGAACTTCCTTATTTGGAGGCCTGGCAGCTGTTTGGGCA
 
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JMSF038C09+           ATAAAAGTATTTCCAAGTGACAGTTCATGCCTTTCACCCCAAAAGTTCTTAGACTCTGGA
                      ____________________________________________________________
consensus             ATAAAAGTATTTCCAAGTGACAGTTCATGCCTTTCACCCCAAAAGTTCTTAGACTCTGGA
 
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JMSF038C09+           GTATATTGGCAAATATACTTGTCATCCGCACCAAGAATTTGAGCTCCAACTCCTGTAAAA
                      ____________________________________________________________
consensus             GTATATTGGCAAATATACTTGTCATCCGCACCAAGAATTTGAGCTCCAACTCCTGTAAAA
 
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JMSF038C09+           CGACGCCCGTACTGCACCTCCTCTATTCCACTCAATGGCTTAGTGAATGCAGGATTCTCA
                      ____________________________________________________________
consensus             CGACGCCCGTACTGCACCTCCTCTATTCCACTCAATGGCTTAGTGAATGCAGGATTCTCA
 
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JMSF038C09+           ACAGAATACATATAACAGAAACTCTGTCTACATTCTGGAATTGAAACCTTAAAGAACCAT
                      ____________________________________________________________
consensus             ACAGAATACATATAACAGAAACTCTGTCTACATTCTGGAATTGAAACCTTAAAGAACCAT
 
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JMSF038C09+           CCCTCGAAAAACTGTCTACGAGTCCCATCAAAATGGTATCCGCTGTGAGGAGTTCGAAGA
                      ____________________________________________________________
consensus             CCCTCGAAAAACTGTCTACGAGTCCCATCAAAATGGTATCCGCTGTGAGGAGTTCGAAGA
 
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JMSF038C09+           GGGCGATTGGAAGGGGTGGGGGTATAAACGGGTTTAATAGCCTCTTTAATCTCCGGCGCG
                      ____________________________________________________________
consensus             GGGCGATTGGAAGGGGTGGGGGTATAAACGGGTTTAATAGCCTCTTTAATCTCCGGCGCG
 
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JMSF008A12+                        CGGAATCGGGCGCCGATACTGCTTTCACTCTGAACGCCGGCGACTTC
JMSF038C09+           GGGTTTTCGACGGCGGAATCGGGCGCCGATACTGCTTTCACTCTGAACGCCGGCGACTTC
                      ____________________________________________________________
consensus             GGGTTTTCGACGGCGGAATCGGGCGCCGATACTGCTTTCACTCTGAACGCCGGCGACTTC
 
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JMSF008A12+           TTTCCGACGCGCAGGTGCTTCCGCGGAGAGAATCTCGCAGTGTAAGATTGGGTTGGTGGA
JMSF038C09+           TTTCCGACGCGCAGGTGCTTCCGCGGAGAGAATCTCGCAGTGTAAGATTGGGTTGGTGGA
                      ____________________________________________________________
consensus             TTTCCGACGCGCAGGTGCTTCCGCGGAGAGAATCTCGCAGTGTAAGATTGGGTTGGTGGA
 
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JMSF008A12+           GAAACGGCAGAAGAACATGCAAGGAGGGTTTCCATGGATTCGCAACAGCAGCGTCTTCTG
JMSF038C09+           GAAACGGCAGAAGAACATGCAAGGAGGGTTTCCATGGATTCGCAACAGCAGCGTCTTCTG
                      ____________________________________________________________
consensus             GAAACGGCAGAAGAACATGCAAGGAGGGTTTCCATGGATTCGCAACAGCAGCGTCTTCTG
 
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JMSF008A12+           ACGTCAGCAGAAACAGGTGGCGGAGAGACAGAACGCAGAGGGCGCGGTGGCGCTTTGA  
JMSF038C09+           ACGTCAGCAGAAACAGGTGGCGGAGAGACAGAACGCAGAGGGCGCGGTGGCGCTTTGACC
                      ____________________________________________________________
consensus             ACGTCAGCAGAAACAGGTGGCGGAGAGACAGAACGCAGAGGGCGCGGTGGCGCTTTGACC