Contig 007987:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016N11Sequence165024147740007987 (2)ref|XP_006356579.1|4e-27PREDICTED: uncharacterized protein DDB_G0271670-like isoform X3 [Solanum tubero
JMSF038B24Sequence658007987 (2)ref|XP_009627645.1|1e-07PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF016N11+                                             TGAATTGGCTTGTTCCGAGACACCA
                      ____________________________________________________________
consensus                                                TGAATTGGCTTGTTCCGAGACACCA
 
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rJMSF016N11+          GCATTGGAGGGCAAAAATATATTTAAGCTGCTAGAAGCATTATAATGAGAAGGAACATTG
                      ____________________________________________________________
consensus             GCATTGGAGGGCAAAAATATATTTAAGCTGCTAGAAGCATTATAATGAGAAGGAACATTG
 
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rJMSF016N11+          TGCAGTGTAATGTTCTCAGCTCGGGGATTGGAGCTCGAACTTCCACCTGCACACAACTTT
                      ____________________________________________________________
consensus             TGCAGTGTAATGTTCTCAGCTCGGGGATTGGAGCTCGAACTTCCACCTGCACACAACTTT
 
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rJMSF016N11+          TCAGAGCTAACTTCAAGGGCCTTCCGCTTGCAGGCAAAACCCCAGGTGCCCAAAGAAGAA
                      ____________________________________________________________
consensus             TCAGAGCTAACTTCAAGGGCCTTCCGCTTGCAGGCAAAACCCCAGGTGCCCAAAGAAGAA
 
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rJMSF016N11+          TCTGAATCATTATCATGGTTTCCCATCAAATCACCAGAATTGTATGAAGAGGTACCTCCA
                      ____________________________________________________________
consensus             TCTGAATCATTATCATGGTTTCCCATCAAATCACCAGAATTGTATGAAGAGGTACCTCCA
 
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rJMSF016N11+          TTATCAGAAGAAGCAAAAGCAGGAAGAAGGTCGGTTTCTGATCCAACTGCCTTATTACGA
                      ____________________________________________________________
consensus             TTATCAGAAGAAGCAAAAGCAGGAAGAAGGTCGGTTTCTGATCCAACTGCCTTATTACGA
 
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rJMSF016N11+          CCAAGAGGTGCACATGTTCTTGTGACCTGTGGGCCACTGAAATTGTGATATGGACCACTT
                      ____________________________________________________________
consensus             CCAAGAGGTGCACATGTTCTTGTGACCTGTGGGCCACTGAAATTGTGATATGGACCACTT
 
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rJMSF016N11+          AAACTAACATTCCCATGGCTGCAATTAGAACTAGAATGATGCGTAATAGTTCTGCCAATT
                      ____________________________________________________________
consensus             AAACTAACATTCCCATGGCTGCAATTAGAACTAGAATGATGCGTAATAGTTCTGCCAATT
 
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rJMSF016N11+          GGGTGACTGCCACCATAAACATTGCTACAGTTCTCGTGAAGGAGACCACTGGAAGAGTCA
JMSF038B24+            GGTGACTGCCACCATAAACATTGCTACAGTTCTCGTGAAGGAGACCACTGGAAGAGTCA
                      ____________________________________________________________
consensus             GGGTGACTGCCACCATAAACATTGCTACAGTTCTCGTGAAGGAGACCACTGGAAGAGTCA
 
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rJMSF016N11+          AATTCTCGTTCCTCAGACATTGGATCAGCTACAACATAATTGCTTGACGATGAAGACCAA
JMSF038B24+           AATTCTCGTTCCTCAGACATTGGATCAGCTACAACATAATTGCTTGACGATGAAGACCAA
                      ____________________________________________________________
consensus             AATTCTCGTTCCTCAGACATTGGATCAGCTACAACATAATTGCTTGACGATGAAGACCAA
 
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rJMSF016N11+          CCATGCCTTACTTCCAAATTACTCCCATGGACATGGCTATGTACATTTCGAGATGAATTG
JMSF038B24+           CCATGCCTTACTTCCAAATTACTCCCATGGACATGGCTATGTACATTTCGAGATGAATTG
                      ____________________________________________________________
consensus             CCATGCCTTACTTCCAAATTACTCCCATGGACATGGCTATGTACATTTCGAGATGAATTG
 
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rJMSF016N11+          GACTCACCTGGATCCCAATCACTGAAANCTAGGAGCATTCATGCCTGGATTTGATAATTG
JMSF038B24+           GACTCACCTGGATCCCAATCACTGAAA-CTAGGAGCATTCATGCCTGGATTTGATAATTG
                      ____________________________________________________________
consensus             GACTCACCTGGATCCCAATCACTGAAANCTAGGAGCATTCATGCCTGGATTTGATAATTG
 
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rJMSF016N11+          ATTCTCAACTGGATCTGGCATGTTATCTCAAGAATTTGTGTGGTTTATAGAACAG     
JMSF038B24+           ATTCTCAACTGGATCTGGCATGTTATCTCAAGAATTTGTGTGGTTTATAGAACAGTTACT
                      ____________________________________________________________
consensus             ATTCTCAACTGGATCTGGCATGTTATCTCAAGAATTTGTGTGGTTTATAGAACAGTTACT
 
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JMSF038B24+           AGATAAACACCCTTTTACAGATGAATTTCTTCAAGAAACGAGAATCAGAAGGCTTCCATC
                      ____________________________________________________________
consensus             AGATAAACACCCTTTTACAGATGAATTTCTTCAAGAAACGAGAATCAGAAGGCTTCCATC
 
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JMSF038B24+           TCGACCCTCATCAAATATGCTTCCATGAGTCCAATTGAAGATTTCAACCGATGAGCTATT
                      ____________________________________________________________
consensus             TCGACCCTCATCAAATATGCTTCCATGAGTCCAATTGAAGATTTCAACCGATGAGCTATT
 
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JMSF038B24+           GGAGAAGAGGATCGGTCTCGGTTTCTCAAAAATCCAGTTCACTTCCTGGGCGCACAGCTT
                      ____________________________________________________________
consensus             GGAGAAGAGGATCGGTCTCGGTTTCTCAAAAATCCAGTTCACTTCCTGGGCGCACAGCTT
 
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JMSF038B24+           GGATGAACGGCTTTCGTTCCGGCGGAAAAAAACAGAGGAGCGGCAGGCCGGCGGGGCAAA
                      ____________________________________________________________
consensus             GGATGAACGGCTTTCGTTCCGGCGGAAAAAAACAGAGGAGCGGCAGGCCGGCGGGGCAAA
 
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JMSF038B24+           GATGGATAGCGTGGACTACAGCAAGGATGCCTCTATGGACGACCTCCTCTCTAGAGAGAA
                      ____________________________________________________________
consensus             GATGGATAGCGTGGACTACAGCAAGGATGCCTCTATGGACGACCTCCTCTCTAGAGAGAA
 
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JMSF038B24+           GACGGGAGTGCGGTGAGTGGGCAGTGGGGACGGTGGCGTAGATACGTAGAGAACGGACTC
                      ____________________________________________________________
consensus             GACGGGAGTGCGGTGAGTGGGCAGTGGGGACGGTGGCGTAGATACGTAGAGAACGGACTC