Contig 007986:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043C07Sequence633007986 (4)ref|XP_009803270.1|1e-42PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]638012416 (3)ref|XP_009803270.1|4e-41PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]
JMFF046O13Sequence647007986 (4)ref|XP_009803270.1|2e-48PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]592012416 (3)ref|XP_009803270.1|2e-42PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]
JMFS051C06Sequence618007986 (4)ref|XP_009803270.1|5e-57PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]
JMSF037I08Sequence683007986 (4)ref|XP_009803270.1|3e-22PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]724012416 (3)ref|XP_009803270.1|5e-74PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS051C06+                               CCTCAAAAGAACTCGAAGCGGGGCGAGTTGACCCAGTGAG
JMFF043C07+                                             GAAGCGGGGCGAGTTGACCCAGTGAG
JMFF046O13+                                             GAAGCGGGGCGAGTTGACCCAGTGAG
                      ____________________________________________________________
consensus                                 CCTCAAAAGAACTCGAAGCGGGGCGAGTTGACCCAGTGAG
 
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JMFS051C06+           TAGGGACTGAAGCGCTTCCTTGAAGTAGAAGGCAGCTCGCCGGAGCGGGTTTCCGGCGGC
JMFF043C07+           TAGGGACTGAAGCGCTTCCTGAAGTAGAANGGCAGCTCGCCGGAGCGGGTTTCCGGCGGC
JMFF046O13+           TAGGGACTGAAGCGCTCCCTGAAGTAGAA-GGCAGCTCGCCGGAGCGGGTTTCCGGCGGC
                      ____________________________________________________________
consensus             TAGGGACTGAAGCGCTTCCTGAAGTAGAAAGGCAGCTCGCCGGAGCGGGTTTCCGGCGGC
 
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JMFS051C06+           GGAACTCAGCTTCTGATTGAGCTGCGGCAGAATCACCTGCGCGAGCTGGACGGCGTTGGA
JMFF043C07+           GGAACTCAGCTTCTGATTGAGCTGCGGCAGAATCACCTGCGCGAGCTGGACGGCGTTGGA
JMFF046O13+           GGAACTCAGCTTCTGATTGAGCTGCGGCAGAATCACCTGCGAGAGCTGGACGGCGTNGGA
                      ____________________________________________________________
consensus             GGAACTCAGCTTCTGATTGAGCTGCGGCAGAATCACCTGCGCGAGCTGGACGGCGTTGGA
 
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JMFS051C06+           GTCGAAACACTCGGCGAACTGGATCAACTCGTCGATGTAATCAAATCCAAAGCTCCAGTT
JMFF043C07+           GTCGAAACACTCGGCGAACTGGATCAACTCGTCGATGTAATCAAATCCAAAGCTCCAGTT
JMFF046O13+           GTCGAAACACTCGGCGAACTGGATCAACTCGTCGATGTAATCAAATCCAAAGCTCCAGTT
JMSF037I08+                                                TAATCAAATCCAAAGCTCCAGTT
                      ____________________________________________________________
consensus             GTCGAAACACTCGGCGAACTGGATCAACTCGTCGATGTAATCAAATCCAAAGCTCCAGTT
 
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JMFS051C06+           TTCATCAAACGAATTAATATTTCCCTGGAATTGTGAGAAATTGAAATCTGAAGAAGGCAC
JMFF043C07+           TTCATCAAACGAATTAATATTTCCCTGGAATTGTGAGAAATTGAAATCTGAAGAAGGCAC
JMFF046O13+           TTCATCAAACGAATTAATATTTCCCTGGAATTGTGAGAAATTGAAATCTGAAGAAGGCAC
JMSF037I08+           TTCATCAAACGAATTAATATTTCCCTGGAATTGTGAGAAATTGAAATCTGAAGAAGGCAC
                      ____________________________________________________________
consensus             TTCATCAAACGAATTAATATTTCCCTGGAATTGTGAGAAATTGAAATCTGAAGAAGGCAC
 
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JMFS051C06+           GAACTCCGGCAGCGAGTGAGTGAACTCGAACTGATGAGTCTGTGACTCGGAGGAGGGGGT
JMFF043C07+           GAACTCCGGCAGCGAGTGAGTGAACTCGAACTGATGAGTCTGTGACTCGGAGGAGGGGGT
JMFF046O13+           GAACTCCGGCAGCGAGTGAGTGAACTCGAACTGATGAGTCTGTGACTCGGAGGAGGGGGT
JMSF037I08+           GAACTCCGGCAGCGAGTGAGTGAACTCGAACTGATGAGTCTGTGACTCGGAGGAGGGGGT
                      ____________________________________________________________
consensus             GAACTCCGGCAGCGAGTGAGTGAACTCGAACTGATGAGTCTGTGACTCGGAGGAGGGGGT
 
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JMFS051C06+           GAAGAGGAGATTATGATCCGGCTTTATATTTCTGTCGTCTTGCAAACCCAACTCCTTCAT
JMFF043C07+           GAAGAGGAGATTATGATCCGGCTTTATATTTCTGTCGTCTTGCAAACCCAACTCCTTCAT
JMFF046O13+           GAAGAGGAGATTATGATCCGGCTTTATATTTCTGTCGTCTTGCAAACCCAACTCCTTCAT
JMSF037I08+           GAAGAGGAGATTATGATCCGGCTTTATATTTCTGTCGTCTTGCAAACCCAACTCCTTCAT
                      ____________________________________________________________
consensus             GAAGAGGAGATTATGATCCGGCTTTATATTTCTGTCGTCTTGCAAACCCAACTCCTTCAT
 
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JMFS051C06+           AAAAGAGTCCCAATCTTCGAAGTTAGTCAGCAAATTATCAGCCAGCTCAAGAGGGTCATC
JMFF043C07+           AAAAGAGTCCCAATCTTCGAAGTTAGTCAGCAAATTATCAGCCAGCTCAAGAGGGTCATC
JMFF046O13+           AAAAGAGTCCCAATCTTCGAAGTTAGTCAGCAAATTATCAGCCAGCTCAAGAGGGTCATC
JMSF037I08+           AAAAGAGTCCCAATCTTCGAAGTTAGTCAGCAAATTATCAGCCAGCTCAAGAGGGTCATC
                      ____________________________________________________________
consensus             AAAAGAGTCCCAATCTTCGAAGTTAGTCAGCAAATTATCAGCCAGCTCAAGAGGGTCATC
 
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JMFS051C06+           GGAGACATCAAAGTTTCCCGCCGGCGCCGCCTTCTGGTCGAGAACAGGGCTGGGGCTTCG
JMFF043C07+           GGAGACATCAAAGTTTCCCGCCGGCGCCGCCTTCTGGTCGAGAACAGGGCTGGGGCTTCG
JMFF046O13+           GGAGACATCAAAGTTTCCCGCCGGCGCCGCCTTCTGGTCGAGAACAGGGCTGGGGCTTCG
JMSF037I08+           GGAGACATCAAAGTTTCCCGCCGGCGCCGCCTTCTGGTCGAGAACAGGGCTGGGGCTTCG
                      ____________________________________________________________
consensus             GGAGACATCAAAGTTTCCCGCCGGCGCCGCCTTCTGGTCGAGAACAGGGCTGGGGCTTCG
 
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JMFS051C06+           CCGGAGCTCAAGAACCGACTTGGGCTCGTACCACCCGTTCCCGGCAGCGGAGTTCCAGTT
JMFF043C07+           CCGGAGCTCAAGAACCGACTTGGGCTCGTACCACCCGTTCCCGGCAGCGGAGTTCCAGTT
JMFF046O13+           CCGGAGCTCAAGAACCGACTTGGGCTCGTACCACCCGTTCCCGGCAGCGGAGTTCCAGTT
JMSF037I08+           CCGGAGCTCAAGAACCGACTTGGGCTCGTACCACCCGTTCCCGGCAGCGGAGTTCCAGTT
                      ____________________________________________________________
consensus             CCGGAGCTCAAGAACCGACTTGGGCTCGTACCACCCGTTCCCGGCAGCGGAGTTCCAGTT
 
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JMFS051C06+           TTCATTTGAAGCAACGGGCACTTTCATCTCTCTGAGAA                      
JMFF043C07+           TTCATTTGAAGCAAC-GGCACTTTCATCTCTCTGAGAATTGAAAGATGAAAGAACGACAA
JMFF046O13+           TTCATTTGAAGCAACGGGCACTTTCATCTCTCTGAGAATTGAAAGATGAAAGAACGACAA
JMSF037I08+           TTCATTTGAAGCAACGGGCACTTTCATCTCTCTGAGAATTGAAAGATGAAAGAACGACAA
                      ____________________________________________________________
consensus             TTCATTTGAAGCAACGGGCACTTTCATCTCTCTGAGAATTGAAAGATGAAAGAACGACAA
 
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JMFF043C07+           AATCCCTA                                                    
JMFF046O13+           AATCCCTA                                                    
JMSF037I08+           AATCCCTAAGATAACCGCACTTTTAAGTTCTCAGCTCCTTTTAATGGCTCTGAAATATGC
                      ____________________________________________________________
consensus             AATCCCTAAGATAACCGCACTTTTAAGTTCTCAGCTCCTTTTAATGGCTCTGAAATATGC
 
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JMSF037I08+           GAGCTGAGTGATGGAAAGGGAGAAGAAAAGTTTGAAATGTGAAAGTAAAGGGGAGGGGGC
                      ____________________________________________________________
consensus             GAGCTGAGTGATGGAAAGGGAGAAGAAAAGTTTGAAATGTGAAAGTAAAGGGGAGGGGGC
 
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JMSF037I08+           CTGTGCCACTTTGGAGGGTTATTGGGATCAATGGCTTTTTATCTTTGCGTGTGGGAGAGT
                      ____________________________________________________________
consensus             CTGTGCCACTTTGGAGGGTTATTGGGATCAATGGCTTTTTATCTTTGCGTGTGGGAGAGT
 
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JMSF037I08+           TGAATTGCAGAGATGCATGGGGGCATAATGTATATGGAGAAGTCATATATGAGAGACATC
                      ____________________________________________________________
consensus             TGAATTGCAGAGATGCATGGGGGCATAATGTATATGGAGAAGTCATATATGAGAGACATC