Contig 007983:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006F02Sequence546007983 (8)715010995 (9)ref|XP_009796557.1|2e-27PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris]
JMFF010H12Sequence583007983 (8)780010995 (9)dbj|BAH20382.1|1e-41AT2G47900 [Arabidopsis thaliana]
JMFF040E04Sequence526007983 (8)ref|XP_010506830.1|7e-06PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506668010995 (9)ref|XP_009796557.1|2e-26PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris]
JMFF046B11Sequence565007983 (8)407010995 (9)
JMSF025D10Sequence675007983 (8)ref|XP_010506830.1|8e-09PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506814010995 (9)ref|XP_009587286.1|2e-74PREDICTED: tubby-like F-box protein 3 [Nicotiana tomentosiformis]
JMSF037G11Sequence672007983 (8)ref|XP_010506830.1|2e-05PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506746010995 (9)ref|XP_009796557.1|2e-120PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris]
JMSF047D14Sequence673007983 (8)ref|XP_010506830.1|2e-05PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506733010995 (9)ref|XP_009796557.1|2e-53PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris]
JMSF051N16Sequence669007983 (8)ref|XP_010506830.1|7e-09PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506725010995 (9)ref|XP_009587286.1|1e-33PREDICTED: tubby-like F-box protein 3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF051N16+ CCTGGACAGTCCTCTGAGACCTCGACCGACCAAA
JMFF040E04+ CGACCGACCAAA
JMSF025D10+ CTGGACAGTCCTCTGAGACCTCGACCGACCAAA
JMSF047D14+ CGACCGACCAAA
JMSF037G11+ CGACCGACCAAA
                      ____________________________________________________________
consensus CCTGGACAGTCCTCTGAGACCTCGACCGACCAAA
 
. : . : . : . : . : . :
JMSF051N16+ CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
JMFF040E04+ CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
JMSF025D10+ CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
JMSF047D14+ CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
JMSF037G11+ CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
                      ____________________________________________________________
consensus CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
 
. : . : . : . : . : . :
JMSF051N16+ ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
JMFF046B11+ ATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
JMFF040E04+ ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
JMSF025D10+ ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
JMFF006F02+ C
JMFF010H12+ TAAAAGACATTTCCGCATCAGCTCNTACACACACAACCCGCACGCAGAAACAAAC
JMSF047D14+ ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
JMSF037G11+ ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
                      ____________________________________________________________
consensus ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
 
. : . : . : . : . : . :
JMSF051N16+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMFF046B11+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMFF040E04+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMSF025D10+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMFF006F02+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMFF010H12+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMSF047D14+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMSF037G11+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
                      ____________________________________________________________
consensus CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
 
. : . : . : . : . : . :
JMSF051N16+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMFF046B11+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMFF040E04+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMSF025D10+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMFF006F02+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMFF010H12+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMSF047D14+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMSF037G11+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
                      ____________________________________________________________
consensus AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
 
. : . : . : . : . : . :
JMSF051N16+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMFF046B11+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMFF040E04+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMSF025D10+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMFF006F02+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMFF010H12+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMSF047D14+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMSF037G11+ CAATTCATGAATAAATAAATCGCGATGAGAAAACGATGATCAGTGATAAACGAAGATAAA
                      ____________________________________________________________
consensus CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
 
. : . : . : . : . : . :
JMSF051N16+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMFF046B11+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMFF040E04+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMSF025D10+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMFF006F02+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMFF010H12+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMSF047D14+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMSF037G11+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
                      ____________________________________________________________
consensus GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
 
. : . : . : . : . : . :
JMSF051N16+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMFF046B11+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMFF040E04+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMSF025D10+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMFF006F02+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMFF010H12+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMSF047D14+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMSF037G11+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
                      ____________________________________________________________
consensus AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
 
. : . : . : . : . : . :
JMSF051N16+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMFF046B11+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMFF040E04+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMSF025D10+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMFF006F02+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMFF010H12+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMSF047D14+ AGTCGAGCAGATCTACTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMSF037G11+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
                      ____________________________________________________________
consensus AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
 
. : . : . : . : . : . :
JMSF051N16+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMFF046B11+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMFF040E04+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTT
JMSF025D10+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMFF006F02+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMFF010H12+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMSF047D14+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMSF037G11+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
                      ____________________________________________________________
consensus CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
 
. : . : . : . : . : . :
JMSF051N16+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMFF046B11+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMSF025D10+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMFF006F02+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMFF010H12+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMSF047D14+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMSF037G11+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
                      ____________________________________________________________
consensus TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
 
. : . : . : . : . : . :
JMSF051N16+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGC
JMFF046B11+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCC
JMSF025D10+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCC
JMFF006F02+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCCA
JMFF010H12+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCCAGTCC
JMSF047D14+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCCAGTCCAGATAGATGATCC
JMSF037G11+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCCAGTCCAGATAGATGATCC
                      ____________________________________________________________
consensus TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCCAGTCCAGATAGATGATCC