| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006F02 | Sequence | 546 | 007983 (8) | 715 | 010995 (9) | ref|XP_009796557.1| | 2e-27 | PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris] | |||
| JMFF010H12 | Sequence | 583 | 007983 (8) | 780 | 010995 (9) | dbj|BAH20382.1| | 1e-41 | AT2G47900 [Arabidopsis thaliana] | |||
| JMFF040E04 | Sequence | 526 | 007983 (8) | ref|XP_010506830.1| | 7e-06 | PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506 | 668 | 010995 (9) | ref|XP_009796557.1| | 2e-26 | PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris] |
| JMFF046B11 | Sequence | 565 | 007983 (8) | 407 | 010995 (9) | ||||||
| JMSF025D10 | Sequence | 675 | 007983 (8) | ref|XP_010506830.1| | 8e-09 | PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506 | 814 | 010995 (9) | ref|XP_009587286.1| | 2e-74 | PREDICTED: tubby-like F-box protein 3 [Nicotiana tomentosiformis] |
| JMSF037G11 | Sequence | 672 | 007983 (8) | ref|XP_010506830.1| | 2e-05 | PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506 | 746 | 010995 (9) | ref|XP_009796557.1| | 2e-120 | PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris] |
| JMSF047D14 | Sequence | 673 | 007983 (8) | ref|XP_010506830.1| | 2e-05 | PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506 | 733 | 010995 (9) | ref|XP_009796557.1| | 2e-53 | PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris] |
| JMSF051N16 | Sequence | 669 | 007983 (8) | ref|XP_010506830.1| | 7e-09 | PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506 | 725 | 010995 (9) | ref|XP_009587286.1| | 1e-33 | PREDICTED: tubby-like F-box protein 3 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF051N16+ CCTGGACAGTCCTCTGAGACCTCGACCGACCAAA
JMFF040E04+ CGACCGACCAAA
JMSF025D10+ CTGGACAGTCCTCTGAGACCTCGACCGACCAAA
JMSF047D14+ CGACCGACCAAA
JMSF037G11+ CGACCGACCAAA
____________________________________________________________
consensus CCTGGACAGTCCTCTGAGACCTCGACCGACCAAA
. : . : . : . : . : . :
JMSF051N16+ CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
JMFF040E04+ CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
JMSF025D10+ CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
JMSF047D14+ CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
JMSF037G11+ CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
____________________________________________________________
consensus CCTCAAATCAAACCCTTTCCGAGAAATACTCCCAAACTCACCCCTCATGTCCTGAATTAT
. : . : . : . : . : . :
JMSF051N16+ ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
JMFF046B11+ ATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
JMFF040E04+ ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
JMSF025D10+ ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
JMFF006F02+ C
JMFF010H12+ TAAAAGACATTTCCGCATCAGCTCNTACACACACAACCCGCACGCAGAAACAAAC
JMSF047D14+ ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
JMSF037G11+ ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
____________________________________________________________
consensus ACTTCTAAAAGACATTTCCGCATCAGCTCCTACACACACAACCCGCACGCAGAAACAAAC
. : . : . : . : . : . :
JMSF051N16+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMFF046B11+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMFF040E04+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMSF025D10+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMFF006F02+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMFF010H12+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMSF047D14+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
JMSF037G11+ CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
____________________________________________________________
consensus CCCCCAAAAAAAATCCTAAATCACATCAGTAACAAACGGAGCGATGCCCTCACCTTCGAA
. : . : . : . : . : . :
JMSF051N16+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMFF046B11+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMFF040E04+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMSF025D10+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMFF006F02+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMFF010H12+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMSF047D14+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
JMSF037G11+ AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
____________________________________________________________
consensus AACCAAGTTTATCCGTGAATTCATAGACTAATTTCAGTTCCTTATCGATTATCAATTCAT
. : . : . : . : . : . :
JMSF051N16+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMFF046B11+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMFF040E04+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMSF025D10+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMFF006F02+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMFF010H12+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMSF047D14+ CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
JMSF037G11+ CAATTCATGAATAAATAAATCGCGATGAGAAAACGATGATCAGTGATAAACGAAGATAAA
____________________________________________________________
consensus CAATTCATGAATAAATAAATCGCGATGAG-AAACGATGATCAGTGATAAACGAAGATAAA
. : . : . : . : . : . :
JMSF051N16+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMFF046B11+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMFF040E04+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMSF025D10+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMFF006F02+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMFF010H12+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMSF047D14+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
JMSF037G11+ GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
____________________________________________________________
consensus GTTGCAAACTTTGAACAAAAGGAGCGGAGAAATGAAAGAATCTCCACTGATAATTGATCG
. : . : . : . : . : . :
JMSF051N16+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMFF046B11+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMFF040E04+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMSF025D10+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMFF006F02+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMFF010H12+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMSF047D14+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
JMSF037G11+ AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
____________________________________________________________
consensus AGACAGATAGAACGCTCTTTCCCAGATGAAGAAAGTAAAGAGCAGACGCTAGAAAAGTGA
. : . : . : . : . : . :
JMSF051N16+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMFF046B11+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMFF040E04+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMSF025D10+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMFF006F02+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMFF010H12+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMSF047D14+ AGTCGAGCAGATCTACTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
JMSF037G11+ AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
____________________________________________________________
consensus AGTCGAGCAGATCTCCTACATAAGCCGCCGAAACGGAGTTGGAAGCGATTGAGTAAAGTT
. : . : . : . : . : . :
JMSF051N16+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMFF046B11+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMFF040E04+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTT
JMSF025D10+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMFF006F02+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMFF010H12+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMSF047D14+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
JMSF037G11+ CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
____________________________________________________________
consensus CAGATCAAAAGGGCAGTCTTGAAATATAGATTTCCGATTGAGGTTAAGCACTGGGATGAA
. : . : . : . : . : . :
JMSF051N16+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMFF046B11+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMSF025D10+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMFF006F02+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMFF010H12+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMSF047D14+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
JMSF037G11+ TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
____________________________________________________________
consensus TTCGGGGTAGCGTTTAACGAGTGGTGGTTGTGGCGGAGTAGTGACGTCAGCATCTTCTTC
. : . : . : . : . : . :
JMSF051N16+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGC
JMFF046B11+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCC
JMSF025D10+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCC
JMFF006F02+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCCA
JMFF010H12+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCCAGTCC
JMSF047D14+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCCAGTCCAGATAGATGATCC
JMSF037G11+ TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCCAGTCCAGATAGATGATCC
____________________________________________________________
consensus TCCGTCAGTCGGGCTTACGCCGCGATCTGTGCTGCAGTGTCCAGTCCAGATAGATGATCC