| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001H14 | Sequence | 532 | 007982 (7) | ref|XP_009618477.1| | 2e-39 | PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Nicotiana tomentosif | 483 | 007982 (7) | ref|XP_009618477.1| | 1e-39 | PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Nicotiana tomentosif |
| JMFF037N15 | Sequence | 532 | 007982 (7) | ref|XP_009618477.1| | 2e-39 | PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Nicotiana tomentosif | 502 | 007982 (7) | ref|XP_009618477.1| | 1e-39 | PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Nicotiana tomentosif |
| JMFN034N05 | Sequence | 526 | 007982 (7) | ref|XP_009618477.1| | 2e-39 | PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Nicotiana tomentosif | |||||
| JMSF036P24 | Sequence | 573 | 007982 (7) | ref|XP_009618477.1| | 3e-39 | PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Nicotiana tomentosif | 530 | 007982 (7) | ref|XP_009618477.1| | 2e-39 | PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Nicotiana tomentosif |
This contig is upended
. : . : . : . : . : . :
JMFF001H14+ TTATCATTGAAGC
JMFF037N15+ TTATCATTGAAGC
JMFN034N05+ ATCATTGAAGC
JMSF036P24+ TAAGCCAAATGAAATCAAAATTATCATTGAAGC
____________________________________________________________
consensus TAAGCCAAATGAAATCAAAATTATCATTGAAGC
. : . : . : . : . : . :
rJMSF036P24- AATTGCATTCCCAACCTCAAAATGAGGCAATAGGTTCTTGATTCAGGGTC
JMFF001H14+ ATATATATGAAATTGCATTCCCAACCTCAAAATGAGGCAATAGGTTCTTGATTCAGGGTC
rJMFF037N15- AAATTGCATTCCCAACCTCAAAATGAGGCAATAGGTTCTTGATTCAGGGTC
rJMFF001H14- AAATGAGGCAATAGGTTCTTGATTCAGGGTC
JMFF037N15+ ATATATATGAAATTGCATTCCCAACCTCAAAATGAGGCAATAGGTTCTTGATTCAGGGTC
JMFN034N05+ ATATATATGAAATTGCATTCCCAACCTCAAAATGAGGCAATAGGTTCTTGATTCAGGGTC
JMSF036P24+ ATATATATGAAATTGCATTCCCAACCTCAAAATGAGGCAATAGGTTCTTGATTCAGGGTC
____________________________________________________________
consensus ATATATATGAAATTGCATTCCCAACCTCAAAATGAGGCAATAGGTTCTTGATTCAGGGTC
. : . : . : . : . : . :
rJMSF036P24- GAAGTGCAAAAGAGATTCAATGAAATCATGAAAGTAGATCTGAAGCCTCAGCATAGATGA
JMFF001H14+ GAAGTGCAAAAGAGATTCAATGAAATCATGAAAGTAGATCTGAAGCCTCAGCATAGATGA
rJMFF037N15- GAAGTGCAAAAGAGATTCAATGAAATCATGAAAGTAGATCTGAAGCCTCAGCATAGATGA
rJMFF001H14- GAAGTGCAAAAGAGATTCAATGAAATCATGAAAGTAGATCTGAAGCCTCAGCATAGATGA
JMFF037N15+ GAAGTGCAAAAGAGATTCAATGAAATCATGAAAGTAGATCTGAAGCCTCAGCATAGATGA
JMFN034N05+ GAAGTGCAAAAGAGATTCAATGAAATCATGAAAGTAGATCTGAAGCCTCAGCATAGATGA
JMSF036P24+ GAAGTGCAAAAGAGATTCAATGAAATCATGAAAGTAGATCTGAAGCCTCAGCATAGATGA
____________________________________________________________
consensus GAAGTGCAAAAGAGATTCAATGAAATCATGAAAGTAGATCTGAAGCCTCAGCATAGATGA
. : . : . : . : . : . :
rJMSF036P24- AGAAAGAGGATAAAAAAATTAACATCGTTCATTGATCAAATTATTCCTAGAGTCTTCTCA
JMFF001H14+ AGAAAGAGGATAAAAAAATTAACATCGTTCATTGATCAAATTATTCCTAGAGTCTTCTCA
rJMFF037N15- AGAAAGAGGATAAAAAAATTAACATCGTTCATTGATCAAATTATTCCTAGAGTCTTCTCA
rJMFF001H14- AGAAAGAGGATAAAAAAATTAACATCGTTCATTGATCAAATTATTCCTAGAGTCTTCTCA
JMFF037N15+ AGAAAGAGGATAAAAAAATTAACATCGTTCATTGATCAAATTATTCCTAGAGTCTTCTCA
JMFN034N05+ AGAAAGAGGATAAAAAAATTAACATCGTTCATTGATCAAATTATTCCTAGAGTCTTCTCA
JMSF036P24+ AGAAAGAGGATAAAAAAATTAACATCGTTCATTGATCAAATTATTCCTAGAGTCTTCTCA
____________________________________________________________
consensus AGAAAGAGGATAAAAAAATTAACATCGTTCATTGATCAAATTATTCCTAGAGTCTTCTCA
. : . : . : . : . : . :
rJMSF036P24- GAGATGTCTGCAACAATCAATGGTGCTTTACCTCAAAAAGGCCATCTGGACCCCATGGAA
JMFF001H14+ GAGATGTCTGCAACAATCAATGGTGCTTTACCTCAAAAAGGCCATCTGGACCCCATGGAA
rJMFF037N15- GAGATGTCTGCAACAATCAATGGTGCTTTACCTCAAAAAGGCCATCTGGACCCCATGGAA
rJMFF001H14- GAGATGTCTGCAACAATCAATGGTGCTTTACCTCAAAAAGGCCATCTGGACCCCATGGAA
JMFF037N15+ GAGATGTCTGCAACAATCAATGGTGCTTTACCTCAAAAAGGCCATCTGGACCCCATGGAA
JMFN034N05+ GAGATGTCTGCAACAATCAATGGTGCTTTACCTCAAAAAGGCCATCTGGACCCCATGGAA
JMSF036P24+ GAGATGTCTGCAACAATCAATGGTGCTTTACCTCAAAAAGGCCATCTGGACCCCATGGAA
____________________________________________________________
consensus GAGATGTCTGCAACAATCAATGGTGCTTTACCTCAAAAAGGCCATCTGGACCCCATGGAA
. : . : . : . : . : . :
rJMSF036P24- ACTCCTTATTGCGAATGTGCATGTATGGATATGCAGGGGGTTCCTCGAAGTGGGGATGAC
JMFF001H14+ ACTCCTTATTGCGAATGTGCATGTATGGATATGCAGGGGGTTCCTCGAAGTGGGGATGAC
rJMFF037N15- ACTCCTTATTGCGAATGTGCATGTATGGATATGCAGGGGGTTCCTCGAAGTGGGGATGAC
rJMFF001H14- ACTCCTTATTGCGAATGTGCATGTATGGATATGCAGGGGGTTCCTCGAAGTGGGGATGAC
JMFF037N15+ ACTCCTTATTGCGAATGTGCATGTATGGATATGCAGGGGGTTCCTCGAAGTGGGGATGAC
JMFN034N05+ ACTCCTTATTGCGAATGTGCATGTATGGATATGCAGGGGGTTCCTCGAAGTGGGGATGAC
JMSF036P24+ ACTCCTTATTGCGAATGTGCATGTATGGATATGCAGGGGGTTCCTCGAAGTGGGGATGAC
____________________________________________________________
consensus ACTCCTTATTGCGAATGTGCATGTATGGATATGCAGGGGGTTCCTCGAAGTGGGGATGAC
. : . : . : . : . : . :
rJMSF036P24- CCTTGGAAAGATTAACAGCTGCCAGGATAGTACACGCGACTATTCCAGCATAGGTGATTT
JMFF001H14+ CCTTGGAAAGATTAACAGCTGCCAGGATAGTACACGCGACTATTCCAGCATAGGTGATTT
rJMFF037N15- CCTTGGAAAGATTAACAGCTGCCAGGATAGTACACGCGACTATTCCAGCATAGGTGATTT
rJMFF001H14- CCTTGGAAAGATTAACAGCTGCCAGGATAGTACACGCGACTATTCCAGCATAGGTGATTT
JMFF037N15+ CCTTGGAAAGATTAACAGCTGCCAGGATAGTACACGCGACTATTCCAGCATAGGTGATTT
JMFN034N05+ CCTTGGAAAGATTAACAGCTGCCAGGATAGTACACGCGACTATTCCAGCATAGGTGATTT
JMSF036P24+ CCTTGGAAAGATTAACAGCTGCCAGGATAGTACACGCGACTATTCCAGCATAGGTGATTT
____________________________________________________________
consensus CCTTGGAAAGATTAACAGCTGCCAGGATAGTACACGCGACTATTCCAGCATAGGTGATTT
. : . : . : . : . : . :
rJMSF036P24- TCTCCCACTTTGAAGCTTCGGCGGCCTCGTCATGATGGGCGGAGGAAGAAAAGCTACGCT
JMFF001H14+ TCTCCCACTTTGAAGCTTCGGCGGCCTCGTCATGATGGGCGGAGGAAGAAAAGCTACGCT
rJMFF037N15- TCTCCCACTTTGAAGCTTCGGCGGCCTCGTCATGATGGGCGGAGGAAGAAAAGCTACGCT
rJMFF001H14- TCTCCCACTTTGAAGCTTCGGCGGCCTCGTCATGATGGGCGGAGGAAGAAAAGCTACGCT
JMFF037N15+ TCTCCCACTTTGAAGCTTCGGCGGCCTCGTCATGATGGGCGGAGGAAGAAAAGCTACGCT
JMFN034N05+ TCTCCCACTTTGAAGCTTCGGCGGCCTCGTCATGATGGGCGGAGGAAGAAAAGCTACGCT
JMSF036P24+ TCTCCCACTTTGAAGCTTCGGCGGCCTCGTCATGATGGGCGGAGGAAGAAAAGCTACGCT
____________________________________________________________
consensus TCTCCCACTTTGAAGCTTCGGCGGCCTCGTCATGATGGGCGGAGGAAGAAAAGCTACGCT
. : . : . : . : . : . :
rJMSF036P24- TAGAAGCCGGAGCCCGGCGAGAAACGCCACCGCGGAGGGCGGAGCGGATGCTGGATCTCA
JMFF001H14+ TAGAAGCCGGAGCCCGGCGAGAAACGCCACCGCGGAGGGCGGAGCGGATGCTGGATCTCA
rJMFF037N15- TAGAAGCCGGAGCCCGGCGAGAAACGCCACCGCGGAGGGCGGAGCGGATGCTGGATCTCA
rJMFF001H14- TAGAAGCCGGAGCCCGGCGAGAAACGCCACCGCGGAGGGCGGAGCGGATGCTGGATCTCA
JMFF037N15+ TAGAAGCCGGAGCCCGGCGAGAAACGCCACCGCGGAGGGCGGAGCGGATGCTGGATCTCA
JMFN034N05+ TAGAAGCCGGAGCCCGGCGAGAAACGCCACCGCGGAGGGCGGAGCGGATGCTGGATCTCA
JMSF036P24+ TAGAAGCCGGAGCCCGGCGAGAAACGCCACCGCGGAGGGCGGAGCGGATGCTGGATCTCA
____________________________________________________________
consensus TAGAAGCCGGAGCCCGGCGAGAAACGCCACCGCGGAGGGCGGAGCGGATGCTGGATCTCA
. : . : . : . : . : . :
rJMSF036P24- CAATCGTCGACGCCATTCTCTCTCAAATTGACTGACCTTTTGGCTTTTGCGTCTGCGTTC
JMFF001H14+ CAATCGTCGACGCCATTCTCTCTCAAATTGA
rJMFF037N15- CAATCGTCGACGCCATTCTCTCTCAAATTGA
rJMFF001H14- CAATCGTCGACGCCATTCTCTCTCAAATTGA
JMFF037N15+ CAATCGTCGACGCCATTCTCTCTCAAATTGA
JMFN034N05+ CAATCGTCGACGCCATTCTCTCTCAAATTGA
JMSF036P24+ CAATCGTCGACGCCATTCTCTCTCAAATTGACTGACCTTTTGGCTTTTGCGTCTGCGTTC
____________________________________________________________
consensus CAATCGTCGACGCCATTCTCTCTCAAATTGACTGACCTTTTGGCTTTTGCGTCTGCGTTC