Contig 007978:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF036B19Sequence674007978 (2)ref|XP_009767507.1|7e-44PREDICTED: E3 ubiquitin-protein ligase ATL4 [Nicotiana sylvestris]644004321 (2)ref|XP_009603589.1|1e-61PREDICTED: E3 ubiquitin-protein ligase ATL4 [Nicotiana tomentosiformis]
JMSF036I01Sequence673007978 (2)ref|XP_009767507.1|3e-43PREDICTED: E3 ubiquitin-protein ligase ATL4 [Nicotiana sylvestris]531004321 (2)ref|XP_009767507.1|2e-60PREDICTED: E3 ubiquitin-protein ligase ATL4 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF036I01+ GGATACACCG
JMSF036B19+ CGTGGGATACACCG
                      ____________________________________________________________
consensus CGTGGGATACACCG
 
. : . : . : . : . : . :
JMSF036I01+ TAGAGCGGCACAGAGGACAAGTCTGATTGGTGGAGAGCCACGAGTCGATACACTGCGCGT
JMSF036B19+ TAGAGCGGCACAGAGGACAAGTCTGATTGGTGGAGAGCCACGAGTCGATACACTGCGCGT
                      ____________________________________________________________
consensus TAGAGCGGCACAGAGGACAAGTCTGATTGGTGGAGAGCCACGAGTCGATACACTGCGCGT
 
. : . : . : . : . : . :
JMSF036I01+ GGAACGCGTGGCAACACAGAGGCAATAACCGCAACTGATCATGCGTCTCAAATTTGGACA
JMSF036B19+ GGAACGCGTGGCAACACAGAGGCAATAACCGCAACTGATCATGCGTCTCAAATTTGGACA
                      ____________________________________________________________
consensus GGAACGCGTGGCAACACAGAGGCAATAACCGCAACTGATCATGCGTCTCAAATTTGGACA
 
. : . : . : . : . : . :
JMSF036I01+ AACAAACCGCACAGTCCACGCCGGTAAGGTTCCCCGTAACAGAGCCAAACGTAAACAGCG
JMSF036B19+ AACAAACCGCACAGTCCACGCCGGTAAGGTTCCCCGTAACAGAGCCAAACGTAAACAGCG
                      ____________________________________________________________
consensus AACAAACCGCACAGTCCACGCCGGTAAGGTTCCCCGTAACAGAGCCAAACGTAAACAGCG
 
. : . : . : . : . : . :
JMSF036I01+ GCAGCGACTCCAACGTCTCGGGAGAAGAGCGCCGCTCGTTCGCGGCTGCTGCTGTGGCCG
JMSF036B19+ GCAGCGACTCCAACGTCTCGGGAGAAGAGCGCCGCTCGTTCGCGGCTGCTGCTGTGGCCG
                      ____________________________________________________________
consensus GCAGCGACTCCAACGTCTCGGGAGAAGAGCGCCGCTCGTTCGCGGCTGCTGCTGTGGCCG
 
. : . : . : . : . : . :
JMSF036I01+ CGGCGGCGGCTGCGGAGCTAGAGATCACGTCGTCCGCCGCGTCGTGCGTCCGAAACGAGC
JMSF036B19+ CGGCGGCGGCTGCGGAGCTAGAGATCACGTCGTCCGCCGCGTCGTGCGTCCGAAACGAGC
                      ____________________________________________________________
consensus CGGCGGCGGCTGCGGAGCTAGAGATCACGTCGTCCGCCGCGTCGTGCGTCCGAAACGAGC
 
. : . : . : . : . : . :
JMSF036I01+ GGTGGCAGCGGCGAGACAGCAAGCGGAGGATGAGGTAAATAGTGGCGGAGACGATAACCG
JMSF036B19+ GGTGGCAGCGGCGAGACAGCAAGCGGAGGATGAGGTAAATAGTGGCGGAGACGATAACCG
                      ____________________________________________________________
consensus GGTGGCAGCGGCGAGACAGCAAGCGGAGGATGAGGTAAATAGTGGCGGAGACGATAACCG
 
. : . : . : . : . : . :
JMSF036I01+ CGGACGCGATAACAATAACAACGATAATAATCGACGACGAAGGCGAGGATGAGGACGACG
JMSF036B19+ CGGACGCGATAACAATAACAACGATAATAATCGACGACGAAGGCGAGGATGAGGACGACG
                      ____________________________________________________________
consensus CGGACGCGATAACAATAACAACGATAATAATCGACGACGAAGGCGAGGATGAGGACGACG
 
. : . : . : . : . : . :
JMSF036I01+ ACGAAGAAGAAGCCGCAGGCGGTGGATCACCAGGCTGTTGAGGTTGGAACAGGTTATTAG
JMSF036B19+ ACGAAGAAGAAGCCGCAGGCGGTGGATCACCAGGCTGTTGAGGTTGGAACAGGTTATTAG
                      ____________________________________________________________
consensus ACGAAGAAGAAGCCGCAGGCGGTGGATCACCAGGCTGTTGAGGTTGGAACAGGTTATTAG
 
. : . : . : . : . : . :
JMSF036I01+ CCGAAGGAAGTGAAGCACCACCACCACCACCACCGCCACCGTTGATGGTGGGGAAGAACG
JMSF036B19+ CCGAAGGAAGTGAAGCACCACCACCACCACCACCGCCACCGTTGATGGTGGGGAAGAACG
                      ____________________________________________________________
consensus CCGAAGGAAGTGAAGCACCACCACCACCACCACCGCCACCGTTGATGGTGGGGAAGAACG
 
. : . : . : . : . : . :
JMSF036I01+ GCGGCGGTAAGTATACGCCGGACATTGTAGAGAGAGAGAGAGAAAGTGAAGGAAATAATG
JMSF036B19+ GCGGCGGTAAGTATACGCCGGACATTGTAGAGAGAGAGAGAGAAAGTGAAGGAAATAATG
                      ____________________________________________________________
consensus GCGGCGGTAAGTATACGCCGGACATTGTAGAGAGAGAGAGAGAAAGTGAAGGAAATAATG
 
. : . : . : . : . : . :
JMSF036I01+ GAGGAAGAGAGAGAGGGGGAGAGATTAGGCGCCTGTAGAGAGAGAAAGTGTGGGGGTTTC
JMSF036B19+ GAGGAAGAGAGAGAGGGGGAGAGATTAGGCGCCTGTAGAGAGAGAAAGTGTGGGGGTTTC
                      ____________________________________________________________
consensus GAGGAAGAGAGAGAGGGGGAGAGATTAGGCGCCTGTAGAGAGAGAAAGTGTGGGGGTTTC