| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005P22 | Sequence | 477 | 007976 (4) | ref|XP_009629754.1| | 1e-68 | PREDICTED: caffeoylshikimate esterase-like [Nicotiana tomentosiformis] | 773 | 010974 (4) | ref|XP_009629754.1| | 4e-117 | PREDICTED: caffeoylshikimate esterase-like [Nicotiana tomentosiformis] |
| JMSF010J23 | Sequence | 264 | 007976 (4) | ref|XP_009786213.1| | 7e-08 | PREDICTED: caffeoylshikimate esterase-like [Nicotiana sylvestris] | 662 | 008461 (2) | ref|XP_009786213.1| | 5e-71 | PREDICTED: caffeoylshikimate esterase-like [Nicotiana sylvestris] |
| JMSF010K23 | Sequence | 346 | 007976 (4) | ref|XP_009629754.1| | 2e-31 | PREDICTED: caffeoylshikimate esterase-like [Nicotiana tomentosiformis] | 727 | 008461 (2) | ref|XP_009629754.1| | 2e-80 | PREDICTED: caffeoylshikimate esterase-like [Nicotiana tomentosiformis] |
| JMSF035M08 | Sequence | 642 | 007976 (4) | ref|XP_009786213.1| | 8e-24 | PREDICTED: caffeoylshikimate esterase-like [Nicotiana sylvestris] | 682 | 010974 (4) | ref|XP_009786213.1| | 2e-104 | PREDICTED: caffeoylshikimate esterase-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF035M08+ GGGAACCAACTTTNGGAGAAAATCTCCAGCCCTCTAGAATTT
____________________________________________________________
consensus GGGAACCAACTTTNGGAGAAAATCTCCAGCCCTCTAGAATTT
. : . : . : . : . : . :
JMSF035M08+ TTCTNGTATGACTGCCAAAGATCACAATAGCCAATCCCACGTTTCGAGTATATGTCATAG
____________________________________________________________
consensus TTCTNGTATGACTGCCAAAGATCACAATAGCCAATCCCACGTTTCGAGTATATGTCATAG
. : . : . : . : . : . :
JMSF035M08+ GAAGTATGCACGAAAAAACATTGTCAAACTGTTGATAAGAGGATGCTAGAAACCATGGAT
____________________________________________________________
consensus GAAGTATGCACGAAAAAACATTGTCAAACTGTTGATAAGAGGATGCTAGAAACCATGGAT
. : . : . : . : . : . :
JMSF035M08+ AACTTTCAGAACTTCCACTTCAATGAAATAAGCAAAATGGCGACATAAGATAAAAGTTCA
____________________________________________________________
consensus AACTTTCAGAACTTCCACTTCAATGAAATAAGCAAAATGGCGACATAAGATAAAAGTTCA
. : . : . : . : . : . :
JMSF010K23+ CT
JMFF005P22+ CT
JMSF035M08+ ACCAACAGATCAATAGGTGAGACAAACATGAAACATGTCCTTATGGTAAATGTTTTACCT
____________________________________________________________
consensus ACCAACAGATCAATAGGTGAGACAAACATGAAACATGTCCTTATGGTAAATGTTTTACCT
. : . : . : . : . : . :
JMSF010J23+ TGAGAGCTGGA
JMSF010K23+ CCTCCATCTTTAACTCGGCATGAGGCACCTTGAACAAGCAATGATCTATTGAGAGCTGGA
JMFF005P22+ CCTCCATCTTTAACTCGGCATGAGGCACCTTGAACAAGCAATGATCTATTGAGAGCTGGA
JMSF035M08+ CCTCCATCTTTAACTCGGCATGAGGCACCTTGAACAAGCAATGATCTATTGAGAGCTGGA
____________________________________________________________
consensus CCTCCATCTTTAACTCGGCATGAGGCACCTTGAACAAGCAATGATCTATTGAGAGCTGGA
. : . : . : . : . : . :
JMSF010J23+ CATCNTTAAACGCCTCGCGCGCGCGGCGCCTTGCATCTACAGAGTCCATGTCCGCATCCA
JMSF010K23+ CATCCTTAAACGCCTCGCGCGCGCGGCGCCTTGCATCTACAGAGTCCATGTCCGCATCCA
JMFF005P22+ CATCCTTAAACGCCTCGCGCGCGCGGCGCCTTGCATCTACAGAGTCCATGTCCGCATCCA
JMSF035M08+ CATCCTTAAACGCCTCGCGCGCGCGGCGCCTTGCATCTACAGAGTCCATGTCCGCATCCA
____________________________________________________________
consensus CATCCTTAAACGCCTCGCGCGCGCGGCGCCTTGCATCTACAGAGTCCATGTCCGCATCCA
. : . : . : . : . : . :
JMSF010J23+ GAAGCTTCTGCACCTCCTCGCTCACACCCGGGAACTTCGGAGGCTTCCCCATTACAGCTC
JMSF010K23+ GAAGCTTCTGCACCTCCTCGCTCACACCCGGGAACTTCGGAGGCTTCCCCATTACAGCTC
JMFF005P22+ GAAGCTTCTGCACCTCCTCGCTCACACCCGGGAACTTCGGAGGCTTCCCCATTACAGCTC
JMSF035M08+ GAAGCTTCTGCACCTCCTCGCTCACACCCGGGAACTTCGGAGGCTTCCCCATTACAGCTC
____________________________________________________________
consensus GAAGCTTCTGCACCTCCTCGCTCACACCCGGGAACTTCGGAGGCTTCCCCATTACAGCTC
. : . : . : . : . : . :
JMSF010J23+ TCACACCCGCGGAGCAGACCACCTTCCTAGTACCCTCGAATCTCTGCAGAAAAAAGGTGG
JMSF010K23+ TCACACCCGCGGAGCAGACCACCTTCCTAGTACCCTCGAATCTCTGCAGAAAAAAGGTGG
JMFF005P22+ TCACACCCGCGGAGCAGACCACCTTCCTAGTACCCTCGAATCTCTGCAGAAAAAAGGTGG
JMSF035M08+ TCACACCCGCGGAGCAGACCACCTTCCTAGTACCCTNGAATCTCTGCAGAAAAAAGGTGG
____________________________________________________________
consensus TCACACCCGCGGAGCAGACCACCTTCCTAGTACCCTCGAATCTCTGCAGAAAAAAGGTGG
. : . : . : . : . : . :
JMSF010J23+ TGTTCAGGTATTGGGTTCTTTCTGTTCTGCCGTGGTGTGCTTACCATCTATTGGGTGTTG
JMSF010K23+ TGTTCAGGTATTGGGTTCTTTCTGTTCTGCCGTGGTGTGCTTACCATCTATTGGGTGTTG
JMFF005P22+ TGTTCAGGTATTGGGTTCTTTCTGTTCTGCCGTGGTGTGCTT
JMSF035M08+ TGTTCAGGTATTGGGTTCTTTCTGTTCTGCCGTGGTGTGCTTACCATCTATTGGGTGTTG
____________________________________________________________
consensus TGTTCAGGTATTGGGTTCTTTCTGTTCTGCCGTGGTGTGCTTACCATCTATTGGGTGTTG
. : . : . : . : . : . :
JMSF010J23+ GCCTTCAAGG
JMSF010K23+ GCCTTCAAGG
JMSF035M08+ GCCTTCAAGGCTTCAAAGTCTATGGGTTTACCTCTCCTCTTTAACTTGGTAAAGGTAATC
____________________________________________________________
consensus GCCTTCAAGGCTTCAAAGTCTATGGGTTTACCTCTCCTCTTTAACTTGGTAAAGGTAATC