Contig 007975:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035J22Sequence677007975 (2)ref|XP_009778309.1|4e-61PREDICTED: uncharacterized protein LOC104227702 isoform X2 [Nicotiana sylvestri663007975 (2)ref|XP_009778309.1|2e-47PREDICTED: uncharacterized protein LOC104227702 isoform X2 [Nicotiana sylvestri

Alignment

This contig is upended


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rJMSF035J22-                             CTAGGGAGAGTTAGATAACTTATCAGCATTCTGATGTAAAC
                      ____________________________________________________________
consensus                                CTAGGGAGAGTTAGATAACTTATCAGCATTCTGATGTAAAC
 
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rJMSF035J22-          ATTTACATATTTATCACGATTTACTCGACTAAAAAGATGTAATATCTGTTCAAAAGGATT
                      ____________________________________________________________
consensus             ATTTACATATTTATCACGATTTACTCGACTAAAAAGATGTAATATCTGTTCAAAAGGATT
 
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rJMSF035J22-          ATGAAAAAAACTGGGAGATATTTAATATACATAAATTCTTGACAGCTTACAAGTTACAGC
                      ____________________________________________________________
consensus             ATGAAAAAAACTGGGAGATATTTAATATACATAAATTCTTGACAGCTTACAAGTTACAGC
 
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rJMSF035J22-          CATCAAACCAATAACTTGTAAATCTCTCGACATTTTCAAGTCTTTGTAGGAGTCCGCTCT
                      ____________________________________________________________
consensus             CATCAAACCAATAACTTGTAAATCTCTCGACATTTTCAAGTCTTTGTAGGAGTCCGCTCT
 
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rJMSF035J22-          ATAAAAGTAGCATGTTAGATTTTCCATCGCCAATGGGTCATTCCTTATCGCTTGACTTAA
                      ____________________________________________________________
consensus             ATAAAAGTAGCATGTTAGATTTTCCATCGCCAATGGGTCATTCCTTATCGCTTGACTTAA
 
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rJMSF035J22-          GTTGTCCGGCAAGTAAAACAAGTCCCACTGTAGCAAAAGCGGATAAGGCTGTAGAGGAAT
                      ____________________________________________________________
consensus             GTTGTCCGGCAAGTAAAACAAGTCCCACTGTAGCAAAAGCGGATAAGGCTGTAGAGGAAT
 
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rJMSF035J22-          AGAAAAGTACGAGAAGAGATCCACGCAGTGACTTAGCAAGTAACAAAGCATTGTCATTTG
                      ____________________________________________________________
consensus             AGAAAAGTACGAGAAGAGATCCACGCAGTGACTTAGCAAGTAACAAAGCATTGTCATTTG
 
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rJMSF035J22-          CATACTGCAATGAGCTTTCAGGTATACTTGCAACACCTTGGCTTAATCCCCAAGAAAGAA
                      ____________________________________________________________
consensus             CATACTGCAATGAGCTTTCAGGTATACTTGCAACACCTTGGCTTAATCCCCAAGAAAGAA
 
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rJMSF035J22-          CCCCAAATACAGCACCAATAGCAGCTCCAATGTACGCTTTTTCTGAAGTCAGTGCAACCT
JMSF035J22+                                                      TGAAGTCAGTGCAACCT
                      ____________________________________________________________
consensus             CCCCAAATACAGCACCAATAGCAGCTCCAATGTACGCTTTTTCTGAAGTCAGTGCAACCT
 
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rJMSF035J22-          GAAGCTCACCAAACTTAAAGGTCCGGATTTGTTGCTTTGGTTCTTCATCAGTGCCTCCAG
JMSF035J22+           GAAGCTCACCAAACTTAAAGGTCCGGATTTGTTGCTTTGGTTCTTCATCAGTGCCTCCAG
                      ____________________________________________________________
consensus             GAAGCTCACCAAACTTAAAGGTCCGGATTTGTTGCTTTGGTTCTTCATCAGTGCCTCCAG
 
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rJMSF035J22-          ATACTGGACTTGCAGACAAGAGCTTTCCATTCCTCATCATCACTTTAGCAATCAGCTGCA
JMSF035J22+           ATACTGGACTTGCAGACAAGAGCTTTCCATTCCTCATCATCACTTTAGCAATCAGCTGCA
                      ____________________________________________________________
consensus             ATACTGGACTTGCAGACAAGAGCTTTCCATTCCTCATCATCACTTTAGCAATCAGCTGCA
 
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rJMSF035J22-          CTTCACCCTGACCATACTGTCC                                      
JMSF035J22+           CTTCACCCTGACCATACTGTCCCATGGATTGAAACCTCCTTCCAGCAGATAATATGCGCT
                      ____________________________________________________________
consensus             CTTCACCCTGACCATACTGTCCCATGGATTGAAACCTCCTTCCAGCAGATAATATGCGCT
 
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JMSF035J22+           TTCCAAGTGCTAACTGATTTTTGATAACCGGTCAAAGAGCCTGCCAGCTGAGGAACCGTC
                      ____________________________________________________________
consensus             TTCCAAGTGCTAACTGATTTTTGATAACCGGTCAAAGAGCCTGCCAGCTGAGGAACCGTC
 
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JMSF035J22+           TTCATTAAAGCTGTGGATGTTGATGTGTCAGCTTGTTCCCATGCTCGACTTATATTTAGC
                      ____________________________________________________________
consensus             TTCATTAAAGCTGTGGATGTTGATGTGTCAGCTTGTTCCCATGCTCGACTTATATTTAGC
 
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JMSF035J22+           AATGTCTCCCCGAGATCTTCACCACACTCAGTTTTAACTTGACCATTTGAAAGATCAAAG
                      ____________________________________________________________
consensus             AATGTCTCCCCGAGATCTTCACCACACTCAGTTTTAACTTGACCATTTGAAAGATCAAAG
 
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JMSF035J22+           GCTGCATCATTCAAATCGAGACGAAGATCGCGAGGCAGCCGAGAGAAATAATCCGCAGGG
                      ____________________________________________________________
consensus             GCTGCATCATTCAAATCGAGACGAAGATCGCGAGGCAGCCGAGAGAAATAATCCGCAGGG
 
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JMSF035J22+           AGAACAAAACTGTCAGCAACTTCTTGAAGAAGTGCCTGCGGGTCGGGTTCGATGGATTTA
                      ____________________________________________________________
consensus             AGAACAAAACTGTCAGCAACTTCTTGAAGAAGTGCCTGCGGGTCGGGTTCGATGGATTTA
 
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JMSF035J22+           GGGGAGTCGGATTCTGTGACAGCAAACGGGACCGTTCTTGAGGACTTGAAGAATTTGAGA
                      ____________________________________________________________
consensus             GGGGAGTCGGATTCTGTGACAGCAAACGGGACCGTTCTTGAGGACTTGAAGAATTTGAGA
 
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JMSF035J22+           GAATTAATGTAGAAAAGTGGCGCAGAGCAGTGAAGAGAAGGGGCATGGTGGGAGATTGTA
                      ____________________________________________________________
consensus             GAATTAATGTAGAAAAGTGGCGCAGAGCAGTGAAGAGAAGGGGCATGGTGGGAGATTGTA
 
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JMSF035J22+           GGGGTAAGATGGGGAGAGAGATAGTTGGGAAGATTCCGATGATGAAGACGAAGGACAGCC
                      ____________________________________________________________
consensus             GGGGTAAGATGGGGAGAGAGATAGTTGGGAAGATTCCGATGATGAAGACGAAGGACAGCC