Contig 007971:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS030G06Sequence505007971 (5)
JMFS156D01Sequence435007971 (5)
JMFS156E02Sequence630007971 (5)
JMSF035E23Sequence632007971 (5)648008652 (2)ref|XP_009793559.1|2e-46PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Nicotiana sylv
JMSF047E12Sequence585007971 (5)770008652 (2)ref|XP_009793559.1|5e-67PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Nicotiana sylv

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E12+                                         TGAAGCCAGCCCAAAGCCAACTCCAACTCC
JMFS156E02+                          GCTTACCGTCTGCCCTGAAGCCAGCCCAAAGCCAACTCCAACTCC
JMSF035E23+                                         TGAAGCCAGCCCAAAGCCAACTCCAACTCC
                      ____________________________________________________________
consensus                            GCTTACCGTCTGCCCTGAAGCCAGCCCAAAGCCAACTCCAACTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E12+           AACTCCCACACCCAAAGCTGATAGAAATAGATTCTTCTGATCCATCACTCANCGAAGAAA
JMFS156E02+           AACTCCCACACCCAAAGCTGATAGAAATAGATTCTTCTGATCCATCACTCAACGAAGAAA
JMSF035E23+           AACTCCCACACCCAAAGCTGATAGAAATAGATTCTTCTGATCCATCACTCAACGAAGAAA
                      ____________________________________________________________
consensus             AACTCCCACACCCAAAGCTGATAGAAATAGATTCTTCTGATCCATCACTCAACGAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E12+           AACAAACTTAACAAATTTGCTCACACAAACTTCACACGCAACAGGATACGATAAACAGCG
JMFS030G06+                         ATTTGCTCACACAAACTTCACACGCAACAGGATACGATAAACAGCG
JMFS156E02+           AACAAACTTAACAAATTTGCTCACACAAACTTCACACGCAACAGGATACGATAAACAGCG
JMSF035E23+           AACAAACTTAACAAATTTGCTCACACAAACTTCACACGCAACAGGATACGATAAACAGCG
                      ____________________________________________________________
consensus             AACAAACTTAACAAATTTGCTCACACAAACTTCACACGCAACAGGATACGATAAACAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E12+           CAACGCAAAGTCGATCTAATTCAACTATTTGTAAAACAAATAACAAGCAAAAACTATAAA
JMFS030G06+           CAACGCAAAGTCGATCTAATTCAACTATTTGTAAAACAAATAACAAGCAAAAACTATAAA
JMFS156E02+           CAACGCAAAGTCGATCTAATTCAACTATTTGTAAAACAAATAACAAGCAAAAACTATAAA
JMSF035E23+           CAACGCAAAGTCGATCTAATTCAACTATTTGTAAAACAAATAACAAGCAAAAACTATAAA
                      ____________________________________________________________
consensus             CAACGCAAAGTCGATCTAATTCAACTATTTGTAAAACAAATAACAAGCAAAAACTATAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E12+           ATAACTGCCATGAACTACGTAGCGCACTAGGAACGGCGAAGTAACAGGAAAACTTTAGGT
JMFS030G06+           ATAACTGCCATGAACTACGTAGCGCACTAGGAACGGCGAAGTAACAGGAAAACTTTAGGT
JMFS156E02+           ATAACTGCCATGAACTACGTAGCGCACTAGGAACGGCGAAGTAACAGGAAAACTTTAGGT
JMSF035E23+           ATAACTGCCATGAACTACGTAGCGCACTAGGAACGGCGAAGTAACAGGAAAACTTTAGGT
                      ____________________________________________________________
consensus             ATAACTGCCATGAACTACGTAGCGCACTAGGAACGGCGAAGTAACAGGAAAACTTTAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E12+           ATTCATATAAAAGTTTATTTTCTCTATTAAATTTCTGATATCCGAAAAAGGAACACGGTT
JMFS030G06+           ATTCATATAAAAGTTTATTTTCTCTATTAAATTTCTGATATCCGAAAAAGGAACACGGTT
JMFS156D01+                                     TTAAATTTCTGCTATCCCAAGAAGGCACACGGTT
JMFS156E02+           ATTCATATAAAAGTTTATTTTCTCTATTAAATTTCTGATATCCGAAAAAGGAACACGGTT
JMSF035E23+           ATTCATATAAAAGTTTATTTTCTCTATTAAATTTCTGATATCCGAAAAAGGAACACGGTT
                      ____________________________________________________________
consensus             ATTCATATAAAAGTTTATTTTCTCTATTAAATTTCTGATATCCGAAAAAGGAACACGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E12+           NTTCAGTTCGGAAAATGATCGAGGTGCCTCCGATCCCTGCTCTCCGCCGCCGCCGCCGCC
JMFS030G06+           CTTCAGTTCGGAAAATGATCGAGGTGCCTCCGATCCCTGCTCTCCGCCGCCGCCGCCGCC
JMFS156D01+           CTTCAGTTCGGAAAACCCTTGACGTGCCTCCGATCCCTGCTCCCCGCCCCCGCCCCCGCC
JMFS156E02+           CTTCAGTTCGGAAAATGATCGAGGTGCCTCCGATCCCTGCTCTCCGCCGCCGCCGCCGCC
JMSF035E23+           CTTCAGTTCGGAAAATGATCGAGGTGCCTCCGATCCCTGCTCTCCGCCGCCGCCGCCGCC
                      ____________________________________________________________
consensus             CTTCAGTTCGGAAAATGATCGAGGTGCCTCCGATCCCTGCTCTCCGCCGCCGCCGCCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E12+           GTCGTCTTTGCTAAATGAAGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTACT
JMFS030G06+           GTCGTCTTTGCTAAATGAAGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTACT
JMFS156D01+           GTCGTCTTTGTCAAATGCCGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTTCT
JMFS156E02+           GTCGTCTTTGCTAAATGAAGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTACT
JMSF035E23+           GTCGTCTTTGCTAAATGAAGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTACT
                      ____________________________________________________________
consensus             GTCGTCTTTGCTAAATGAAGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E12+           TTAATGCGCGCACGTATATAGCAACTAGTGGATCTCTAAGTTAAAGGTCGTGGAAATGGA
JMFS030G06+           TTAATGCGCGCACGTATATAGCAACTAGTGGATCTCTAAGTTAAAGGTCGTGGAAATGGA
JMFS156D01+           TTAATGCGCGCACGT                                             
JMFS156E02+           TTAATGCGCGCACGTATATAGCAACTAGTGGATCTCTAAGTTAAAGGTCGTGGAAATGGA
JMSF035E23+           TTAATGCGCGCACGTATATAGCAACTAGTGGATCTCTAAGTTAAAGGTCGTGGAAATGGA
                      ____________________________________________________________
consensus             TTAATGCGCGCACGTATATAGCAACTAGTGGATCTCTAAGTTAAAGGTCGTGGAAATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E12+           AACTCCGGCAAGTTTTCAACGATTCAAGCGGCGGGGA-ACGGTGGTCGAGAGCAACAAAA
JMFS030G06+           AACTCCGGCAAGTTTTCAACGATTCAAGCGGCGGGGA-ACGGTGGTCGAGAGCAACAAAA
JMFS156E02+           AACTCCGGCAAGTTTTCAACGATTCAAGCGGCGGGGA-ACGGTGGTCGAGAGCAACAAAA
JMSF035E23+           AACTCCGGCAAGTTTTCAACGATTCAAGCGGCGGGGANACGGTGGTCGAGAGCAACAAAA
                      ____________________________________________________________
consensus             AACTCCGGCAAGTTTTCAACGATTCAAGCGGCGGGGA-ACGGTGGTCGAGAGCAACAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E12+           AGACAAAGAAAGTAC                                             
JMFS030G06+           AGACAAAGAAAGTACAAAATGATAAGCAGCGAGCGAGGCA                    
JMFS156E02+           AGACAAAGAAAGTACAAAATGATAAGCAGCGAGCGAGGCA                    
JMSF035E23+           AGACAAAGAAAGTACAAAATGATAAGCAGCGAGCGAGGCAGTTAAGAAAATCTGTAATAC
                      ____________________________________________________________
consensus             AGACAAAGAAAGTACAAAATGATAAGCAGCGAGCGAGGCAGTTAAGAAAATCTGTAATAC