Contig 007965:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF034O19Sequence598007965 (2)ref|XP_007051762.1|1e-12ARID/BRIGHT DNA-binding domain,ELM2 domain protein, putative isoform 3 [Theobro702002961 (2)ref|XP_009783361.1|3e-47PREDICTED: AT-rich interactive domain-containing protein 1-like [Nicotiana sylv
JMSF043D18Sequence739007965 (2)ref|XP_009762716.1|3e-34PREDICTED: AT-rich interactive domain-containing protein 1-like [Nicotiana sylv771002961 (2)ref|XP_009617230.1|2e-57PREDICTED: AT-rich interactive domain-containing protein 1-like [Nicotiana tome

Alignment

This contig is upended


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JMSF043D18+                                           TACAATGCGTCTGCAGCAGCCACCTGTC
                      ____________________________________________________________
consensus                                             TACAATGCGTCTGCAGCAGCCACCTGTC
 
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JMSF043D18+           AAGTGAGTCCAAATACTTAGCATAAACCAATTTCAGAGGCAGTCCAGAAGGTGAATCAAA
                      ____________________________________________________________
consensus             AAGTGAGTCCAAATACTTAGCATAAACCAATTTCAGAGGCAGTCCAGAAGGTGAATCAAA
 
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JMSF043D18+           CCCACATTCCTCAGCAACTAATCCCCACAACCCATTCCTGGAAACCTTCTCATACCCACC
                      ____________________________________________________________
consensus             CCCACATTCCTCAGCAACTAATCCCCACAACCCATTCCTGGAAACCTTCTCATACCCACC
 
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JMSF043D18+           TCTCTCCCTCACAACAGCATATAGCTTAAACAAATCAACTGGATTCTTATCGCCAAGCAT
JMSF034O19+            CTCTCCCTCACAACAGCATATAGCTTAAACAAATCAACTGGATTCTTATCGCCAAGCAT
                      ____________________________________________________________
consensus             TCTCTCCCTCACAACAGCATATAGCTTAAACAAATCAACTGGATTCTTATCGCCAAGCAT
 
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JMSF043D18+           TGGAGGCATTGGCCTAAAACACTGAGGACCATAAACTTGTTTAAGCAAATGAGATAAAAA
JMSF034O19+           TGGAGGCATTGGCCTAAAACACTGAGGACCATAAACTTGTTTAAGCAAATGAGATAAAAA
                      ____________________________________________________________
consensus             TGGAGGCATTGGCCTAAAACACTGAGGACCATAAACTTGTTTAAGCAAATGAGATAAAAA
 
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JMSF043D18+           TTTAATAAACAAAAGCCCAGTCGCATTACTAACTTTTTCTCCCTCAAACTCCTTCGTAAT
JMSF034O19+           TTTAATAAACAAAAGCCCAGTCGCATTACTAACTTTTTCTCCCTCAAACTCCTTCGTAAT
                      ____________________________________________________________
consensus             TTTAATAAACAAAAGCCCAGTCGCATTACTAACTTTTTCTCCCTCAAACTCCTTCGTAAT
 
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JMSF043D18+           CGTAGAGCCTTTTAAACCCACTTCAGAACCAAGTTTGTCCTCGGTTTTTTCAAGTGCGCT
JMSF034O19+           CGTAGAGCCTTTTAAACCCACTTCAGAACCAAGTTTGTCCTCGGTTTTTTCAAGTGCGCT
                      ____________________________________________________________
consensus             CGTAGAGCCTTTTAAACCCACTTCAGAACCAAGTTTGTCCTCGGTTTTTTCAAGTGCGCT
 
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JMSF043D18+           CAGGCATTCTAGACCCGATCCATCAACTCTTTTCGACCACCCTGCCATCCGATAATCAAA
JMSF034O19+           CAGGCATTCTAGACCCGATCCATCAACTCTTTTCGACCACCCTGCCATCCGATAATCAAA
                      ____________________________________________________________
consensus             CAGGCATTCTAGACCCGATCCATCAACTCTTTTCGACCACCCTGCCATCCGATAATCAAA
 
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JMSF043D18+           ACCCTAACAGCAAATCATCTCTAATGTACCCAAAGCAAGAGTAACAAATTGATGACCACA
JMSF034O19+           ACCCTAACAGCAAATCATCTCTAATGTACCCAAAGCAAGAGTAACAAATTGATGACCACA
                      ____________________________________________________________
consensus             ACCCTAACAGCAAATCATCTCTAATGTACCCAAAGCAAGAGTAACAAATTGATGACCACA
 
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JMSF043D18+           AAGGGGGAAAAACCTCAAAAGACCGACTTTTATTTATTATCAAAACAAAGAAAAAACGGT
JMSF034O19+           AAGGGGG-AAAACCTCAAAAGACCGACTTTTATTTATTATCAAAACAAAGAAAAAACGGT
                      ____________________________________________________________
consensus             AAGGGGGAAAAACCTCAAAAGACCGACTTTTATTTATTATCAAAACAAAGAAAAAACGGT
 
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JMSF043D18+           GGTCTCGGTCGAGTAAATGCGAAGTGTATGCAATATGTGTGTTTTTAGAGAAAAAACGGC
JMSF034O19+           GGTCTCGGTCGAGTAAATGCGAAGTGTATGCAATATGTGTGTTTTTAGAGAAAAAACGGC
                      ____________________________________________________________
consensus             GGTCTCGGTCGAGTAAATGCGAAGTGTATGCAATATGTGTGTTTTTAGAGAAAAAACGGC
 
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JMSF043D18+           TTTCGATTCCAAGAAATGGACGGATATGGAAGGTGTTGATTGGGTGTTTTGGTTTTGGGC
JMSF034O19+           TTTCGATTCCAAGAAATGGACGGATATGGAAGGTGTTGATTGGGTGTTTTGGTTTTGGGC
                      ____________________________________________________________
consensus             TTTCGATTCCAAGAAATGGACGGATATGGAAGGTGTTGATTGGGTGTTTTGGTTTTGGGC
 
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JMSF043D18+           GGGAAGTGAATATTCATGAGCGCTCAGATTTTCTAGGGTCCAAGATTTT           
JMSF034O19+           GGGAAGTGAATATTCATGAGCGCTCAGATTTTCTAGGGTCCAAGATTTTAAGGCCCCGCC
                      ____________________________________________________________
consensus             GGGAAGTGAATATTCATGAGCGCTCAGATTTTCTAGGGTCCAAGATTTTAAGGCCCCGCC