Contig 007956:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024N18Sequence655007956 (5)ref|XP_009588750.1|7e-115PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]225011432 (6)emb|CDP11269.1|3e-35unnamed protein product [Coffea canephora]
JMSF033K22Sequence656007956 (5)ref|XP_009588750.1|2e-93PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]649011432 (6)emb|CDP11269.1|1e-96unnamed protein product [Coffea canephora]
JMSF036M06Sequence666007956 (5)ref|XP_009588750.1|3e-111PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]692011432 (6)ref|XP_009603645.1|5e-106PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
JMSF036P05Sequence654007956 (5)ref|XP_009588750.1|2e-96PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]703011432 (6)ref|XP_009603645.1|5e-113PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
JMSF049F04Sequence667007956 (5)ref|XP_009588750.1|7e-117PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]725011432 (6)ref|XP_009603645.1|2e-108PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF024N18+ CATGCAAGTCCCAAC
JMSF049F04+ CCCAATTACCATGCAAGTCCCAAC
JMSF036M06+ C
                      ____________________________________________________________
consensus CCCAATTACCATGCAAGTCCCAAC
 
. : . : . : . : . : . :
JMSF024N18+ AAGGACGAGAATAAGCAGCGCGTTTTTTCTGAATGCATATGCTTCCAGCCAACTCTTTGT
JMSF049F04+ AAGGACGAGAATAAGCAGCGCGTTTTTTCTGAATGCATATGCTTCCAGCCAACTCTTTGT
JMSF036M06+ AAGGACGAGAATAAGCAGCGCGTTTTTTCTGAATGCATATGCTTCCAGCCAACTCTTTGT
                      ____________________________________________________________
consensus AAGGACGAGAATAAGCAGCGCGTTTTTTCTGAATGCATATGCTTCCAGCCAACTCTTTGT
 
. : . : . : . : . : . :
JMSF024N18+ TTTTGCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
JMSF049F04+ TTTTGCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
JMSF036M06+ TTTTGCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
JMSF036P05+ GCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
JMSF033K22+ TGCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
                      ____________________________________________________________
consensus TTTTGCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
 
. : . : . : . : . : . :
JMSF024N18+ CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
JMSF049F04+ CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
JMSF036M06+ CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
JMSF036P05+ CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
JMSF033K22+ CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
                      ____________________________________________________________
consensus CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
 
. : . : . : . : . : . :
JMSF024N18+ AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
JMSF049F04+ AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
JMSF036M06+ AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
JMSF036P05+ AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
JMSF033K22+ AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
                      ____________________________________________________________
consensus AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
 
. : . : . : . : . : . :
JMSF024N18+ GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
JMSF049F04+ GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
JMSF036M06+ GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
JMSF036P05+ GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
JMSF033K22+ GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
                      ____________________________________________________________
consensus GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
 
. : . : . : . : . : . :
JMSF024N18+ GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
JMSF049F04+ GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
JMSF036M06+ GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
JMSF036P05+ GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
JMSF033K22+ GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
                      ____________________________________________________________
consensus GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
 
. : . : . : . : . : . :
JMSF024N18+ CCCATACACCACTCCCAGGCTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
JMSF049F04+ CCCATACACCACTCCCAGGCTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
JMSF036M06+ CCCATACACCACTCCCAGGCTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
JMSF036P05+ CCCATACACCACTCCCAGGCTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
JMSF033K22+ CCCATACACCACTCCCAGGNTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
                      ____________________________________________________________
consensus CCCATACACCACTCCCAGGCTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
 
. : . : . : . : . : . :
JMSF024N18+ CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
JMSF049F04+ CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
JMSF036M06+ CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
JMSF036P05+ CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
JMSF033K22+ CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
                      ____________________________________________________________
consensus CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
 
. : . : . : . : . : . :
JMSF024N18+ TTGGTCCAAAACCCACATCCCTCCCTTAGTTTCAGTGGAGTCTTCATCAAATTCCATTGT
JMSF049F04+ TTGGTCCAAAACCCACATCCCTCCCTTAGTTTCAGTGGAGTCTTCATCAAATTCCATTGT
JMSF036M06+ TTGGTCCAAAACCCACATCCCTCCCTTAGTTTCAGTGGAGTCTTCATCAAATTCCATTGT
JMSF036P05+ TTGGTCCAAAACCCACATCCCTCCCTTAGTTTCAGTGGAGTCTTCATCAAATTCCATTGT
JMSF033K22+ TTGGTCCAAAACCCACATCCCTCCCTTAG-TTCAGTGGAGTCTTCATCAAATTCCATTGT
                      ____________________________________________________________
consensus TTGGTCCAAAACCCACATCCCTCCCTTAGTTTCAGTGGAGTCTTCATCAAATTCCATTGT
 
. : . : . : . : . : . :
JMSF024N18+ AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
JMSF049F04+ AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
JMSF036M06+ AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
JMSF036P05+ AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
JMSF033K22+ AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
                      ____________________________________________________________
consensus AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
 
. : . : . : . : . : . :
JMSF024N18+ GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTC
JMSF049F04+ GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTCCC
JMSF036M06+ GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTCCCACTCAATTAATTACAAGC
JMSF036P05+ GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTCCCACTCAATTAATTACAAGC
JMSF033K22+ GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTCCCACTCAATTAATTACAAGC
                      ____________________________________________________________
consensus GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTCCCACTCAATTAATTACAAGC
 
. : . : . : . : . : . :
JMSF036M06+ ATCC
JMSF036P05+ ATCCAAGAAAAAGGTGCAGAGCAAAGCTGGTACTTTTACCAAAAACCCCCACACCCA
JMSF033K22+ ATCCAAGAAAAAGGTGCAGAGCAAAGCTGGTACTTTTACCAAAAACCCCCACACCCAGGC
                      ____________________________________________________________
consensus ATCCAAGAAAAAGGTGCAGAGCAAAGCTGGTACTTTTACCAAAAACCCCCACACCCAGGC