Contig 007956:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024N18Sequence655007956 (5)ref|XP_009588750.1|7e-115PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]225011432 (6)emb|CDP11269.1|3e-35unnamed protein product [Coffea canephora]
JMSF033K22Sequence656007956 (5)ref|XP_009588750.1|2e-93PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]649011432 (6)emb|CDP11269.1|1e-96unnamed protein product [Coffea canephora]
JMSF036M06Sequence666007956 (5)ref|XP_009588750.1|3e-111PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]692011432 (6)ref|XP_009603645.1|5e-106PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
JMSF036P05Sequence654007956 (5)ref|XP_009588750.1|2e-96PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]703011432 (6)ref|XP_009603645.1|5e-113PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
JMSF049F04Sequence667007956 (5)ref|XP_009588750.1|7e-117PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]725011432 (6)ref|XP_009603645.1|2e-108PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF024N18+                                                        CATGCAAGTCCCAAC
JMSF049F04+                                               CCCAATTACCATGCAAGTCCCAAC
JMSF036M06+                                                                      C
                      ____________________________________________________________
consensus                                                 CCCAATTACCATGCAAGTCCCAAC
 
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JMSF024N18+           AAGGACGAGAATAAGCAGCGCGTTTTTTCTGAATGCATATGCTTCCAGCCAACTCTTTGT
JMSF049F04+           AAGGACGAGAATAAGCAGCGCGTTTTTTCTGAATGCATATGCTTCCAGCCAACTCTTTGT
JMSF036M06+           AAGGACGAGAATAAGCAGCGCGTTTTTTCTGAATGCATATGCTTCCAGCCAACTCTTTGT
                      ____________________________________________________________
consensus             AAGGACGAGAATAAGCAGCGCGTTTTTTCTGAATGCATATGCTTCCAGCCAACTCTTTGT
 
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JMSF024N18+           TTTTGCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
JMSF049F04+           TTTTGCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
JMSF036M06+           TTTTGCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
JMSF036P05+               GCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
JMSF033K22+              TGCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
                      ____________________________________________________________
consensus             TTTTGCAGCAAATGATTGCTCGTGAAATGTGTTACGGCTATAAGTCGTTAGCTCCTCATC
 
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JMSF024N18+           CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
JMSF049F04+           CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
JMSF036M06+           CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
JMSF036P05+           CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
JMSF033K22+           CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
                      ____________________________________________________________
consensus             CGTCCGGTGTTGATTGGGAATGGTTTTTATCTTAGCATGTCGACAGAGTAACGAATAAAG
 
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JMSF024N18+           AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
JMSF049F04+           AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
JMSF036M06+           AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
JMSF036P05+           AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
JMSF033K22+           AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
                      ____________________________________________________________
consensus             AGCAAAGGTCCCACCTTGGCCATTGTCACTCGCTCTACACACTATGAAAACGTATTTGAG
 
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JMSF024N18+           GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
JMSF049F04+           GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
JMSF036M06+           GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
JMSF036P05+           GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
JMSF033K22+           GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
                      ____________________________________________________________
consensus             GAGCGGTATAAGGGTGAGCGAGTAGATGATCAATGAAAGTGCTCCAATGATATCCTCGGT
 
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JMSF024N18+           GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
JMSF049F04+           GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
JMSF036M06+           GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
JMSF036P05+           GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
JMSF033K22+           GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
                      ____________________________________________________________
consensus             GTCTTCAATCCCATGGGGAAATGTATTGTAGAAAACATACAAAGGCGATGTCCCCAAGTC
 
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JMSF024N18+           CCCATACACCACTCCCAGGCTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
JMSF049F04+           CCCATACACCACTCCCAGGCTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
JMSF036M06+           CCCATACACCACTCCCAGGCTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
JMSF036P05+           CCCATACACCACTCCCAGGCTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
JMSF033K22+           CCCATACACCACTCCCAGGNTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
                      ____________________________________________________________
consensus             CCCATACACCACTCCCAGGCTCTGAAACGCAAGCTGCAATAGCAAAATCGAGGAGAACTT
 
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JMSF024N18+           CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
JMSF049F04+           CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
JMSF036M06+           CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
JMSF036P05+           CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
JMSF033K22+           CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
                      ____________________________________________________________
consensus             CTTTTCTCTGTACATGGTTTTTAGCCTTCCAGCCTCCTCTTCCATAGGTTGATCAAGTTT
 
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JMSF024N18+           TTGGTCCAAAACCCACATCCCTCCCTTAGTTTCAGTGGAGTCTTCATCAAATTCCATTGT
JMSF049F04+           TTGGTCCAAAACCCACATCCCTCCCTTAGTTTCAGTGGAGTCTTCATCAAATTCCATTGT
JMSF036M06+           TTGGTCCAAAACCCACATCCCTCCCTTAGTTTCAGTGGAGTCTTCATCAAATTCCATTGT
JMSF036P05+           TTGGTCCAAAACCCACATCCCTCCCTTAGTTTCAGTGGAGTCTTCATCAAATTCCATTGT
JMSF033K22+           TTGGTCCAAAACCCACATCCCTCCCTTAG-TTCAGTGGAGTCTTCATCAAATTCCATTGT
                      ____________________________________________________________
consensus             TTGGTCCAAAACCCACATCCCTCCCTTAGTTTCAGTGGAGTCTTCATCAAATTCCATTGT
 
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JMSF024N18+           AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
JMSF049F04+           AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
JMSF036M06+           AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
JMSF036P05+           AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
JMSF033K22+           AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
                      ____________________________________________________________
consensus             AGAAGCCTCTGTTTTTTACAGAAAAAGTTTATTCCACTGGTGATAGAGCTATAGAAGGCG
 
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JMSF024N18+           GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTC                    
JMSF049F04+           GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTCCC                  
JMSF036M06+           GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTCCCACTCAATTAATTACAAGC
JMSF036P05+           GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTCCCACTCAATTAATTACAAGC
JMSF033K22+           GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTCCCACTCAATTAATTACAAGC
                      ____________________________________________________________
consensus             GCTATACAAGCTTAAACAGAAGGAAATCCAACAAGAATTCCCACTCAATTAATTACAAGC
 
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JMSF036M06+           ATCC                                                        
JMSF036P05+           ATCCAAGAAAAAGGTGCAGAGCAAAGCTGGTACTTTTACCAAAAACCCCCACACCCA   
JMSF033K22+           ATCCAAGAAAAAGGTGCAGAGCAAAGCTGGTACTTTTACCAAAAACCCCCACACCCAGGC
                      ____________________________________________________________
consensus             ATCCAAGAAAAAGGTGCAGAGCAAAGCTGGTACTTTTACCAAAAACCCCCACACCCAGGC