Contig 007945:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS033D05Sequence588007945 (5)ref|XP_006347108.1|7e-76PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Solanum tuberosum]
JMFS053G12Sequence587007945 (5)ref|XP_006347108.1|7e-76PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Solanum tuberosum]
JMSF014O13Sequence467007945 (5)ref|XP_006347109.1|5e-65PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum]728008479 (3)gb|EYU31266.1|3e-28hypothetical protein MIMGU_mgv1a003313mg [Erythranthe guttata]
JMSF032E17Sequence621007945 (5)ref|XP_006347109.1|2e-75PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum]763008479 (3)ref|XP_002892579.1|1e-69predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH68838.1| predicted pr
JMSF043G08Sequence693007945 (5)ref|XP_006347109.1|1e-75PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum]830008479 (3)gb|EYU31266.1|1e-48hypothetical protein MIMGU_mgv1a003313mg [Erythranthe guttata]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF043G08+ CCTCAACCACGTCTCGGTGGCCGGATTGTCCAC
                      ____________________________________________________________
consensus CCTCAACCACGTCTCGGTGGCCGGATTGTCCAC
 
. : . : . : . : . : . :
JMSF043G08+ TTCCGTCATATCAACATCCTCCNTCCTCCCCCTCTCCCTGCTCATTCTCCATCATCTCCT
JMSF032E17+ GCTCATTCTCCATCATCTCCT
                      ____________________________________________________________
consensus TTCCGTCATATCAACATCCTCCNTCCTCCCCCTCTCCCTGCTCATTCTCCATCATCTCCT
 
. : . : . : . : . : . :
JMFS033D05+ TCTTCTTCTCGAGCTTCCTCTTCTTCTGCTCGTGCTGCGGTATATTATACACTGAAATCG
JMFS053G12+ TCTTCTCGAGCTTCCTCTTCTTCTGCTCGTGCTGCGGTATATTATACACTGAAATCG
JMSF043G08+ TCTTCTTCTCGAGCTTCCTCTTCTTCTGCTCGTGCTGCGGTATATTATACACTGAAATCG
JMSF032E17+ TCTTCTTCTCGAGCTTCCTCTTCTTCTGCTCGTGCTGCGGTATATTATACACTGAAATCG
                      ____________________________________________________________
consensus TCTTCTTCTCGAGCTTCCTCTTCTTCTGCTCGTGCTGCGGTATATTATACACTGAAATCG
 
. : . : . : . : . : . :
JMFS033D05+ CGTCATTCTTCTTCAAAACATCCATATCCCCTACATAGTGATTCGCCGAGGGGTCAAATG
JMSF014O13+ TACATAGTGATTCGCCGAGGGGTCAAATG
JMFS053G12+ CGTCATTCTTCTTCAAAACATCCATATCCCCTACATAGTGATTCGCCGAGGGGTCAAATG
JMSF043G08+ CGTCATTCTTCTTCAAAACATCCATATCCCCTACATAGTGATTCGCCGAGGGGTCAAATG
JMSF032E17+ CGTCATTCTTCTTCAAAACATCCATATCCCCTACATAGTGATTCGCCGAGGGGTCAAATG
                      ____________________________________________________________
consensus CGTCATTCTTCTTCAAAACATCCATATCCCCTACATAGTGATTCGCCGAGGGGTCAAATG
 
. : . : . : . : . : . :
JMFS033D05+ CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
JMSF014O13+ CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
JMFS053G12+ CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
JMSF043G08+ CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
JMSF032E17+ CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
                      ____________________________________________________________
consensus CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
 
. : . : . : . : . : . :
JMFS033D05+ CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGCGAGGCCGTCCTTCGCAT
JMSF014O13+ CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGCGAGGCCGTCCTTCGCAT
JMFS053G12+ CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGCGAGGCCGTCCTTCGCAT
JMSF043G08+ CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGCGAGGCCGTCCTTCGCAT
JMSF032E17+ CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGAGAGGCCGTCCTTCGCAT
                      ____________________________________________________________
consensus CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGCGAGGCCGTCCTTCGCAT
 
. : . : . : . : . : . :
JMFS033D05+ AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
JMSF014O13+ AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
JMFS053G12+ AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
JMSF043G08+ AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
JMSF032E17+ AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
                      ____________________________________________________________
consensus AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
 
. : . : . : . : . : . :
JMFS033D05+ CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
JMSF014O13+ CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
JMFS053G12+ CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
JMSF043G08+ CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
JMSF032E17+ CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
                      ____________________________________________________________
consensus CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
 
. : . : . : . : . : . :
JMFS033D05+ TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
JMSF014O13+ TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
JMFS053G12+ TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
JMSF043G08+ TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
JMSF032E17+ TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
                      ____________________________________________________________
consensus TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
 
. : . : . : . : . : . :
JMFS033D05+ GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
JMSF014O13+ GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
JMFS053G12+ GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
JMSF043G08+ GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
JMSF032E17+ GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
                      ____________________________________________________________
consensus GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
 
. : . : . : . : . : . :
JMFS033D05+ TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
JMSF014O13+ TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
JMFS053G12+ TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
JMSF043G08+ TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
JMSF032E17+ TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
                      ____________________________________________________________
consensus TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
 
. : . : . : . : . : . :
JMFS033D05+ GTAAGAGATCCATGATTAAAGAGAGATTGCGAGCAA
JMSF014O13+ GTAAGAGATCCATGATT
JMFS053G12+ GTAAGAGATCCATGATTAAAGAGAGATTGCGAGCAA
JMSF043G08+ GTAAGAGATCCATGATTAAAGAGAGATTGCGAGCAAGCTAACAAGAAAACCCCAGTGA
JMSF032E17+ GTAAGAGATCCATGATTAAAGAGAGATTGCGAGCAAGCTAACAAGAAAACCCCAGTGACC
                      ____________________________________________________________
consensus GTAAGAGATCCATGATTAAAGAGAGATTGCGAGCAAGCTAACAAGAAAACCCCAGTGACC