clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS033D05 | Sequence | 588 | 007945 (5) | ref|XP_006347108.1| | 7e-76 | PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Solanum tuberosum] | |||||
JMFS053G12 | Sequence | 587 | 007945 (5) | ref|XP_006347108.1| | 7e-76 | PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Solanum tuberosum] | |||||
JMSF014O13 | Sequence | 467 | 007945 (5) | ref|XP_006347109.1| | 5e-65 | PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum] | 728 | 008479 (3) | gb|EYU31266.1| | 3e-28 | hypothetical protein MIMGU_mgv1a003313mg [Erythranthe guttata] |
JMSF032E17 | Sequence | 621 | 007945 (5) | ref|XP_006347109.1| | 2e-75 | PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum] | 763 | 008479 (3) | ref|XP_002892579.1| | 1e-69 | predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH68838.1| predicted pr |
JMSF043G08 | Sequence | 693 | 007945 (5) | ref|XP_006347109.1| | 1e-75 | PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum] | 830 | 008479 (3) | gb|EYU31266.1| | 1e-48 | hypothetical protein MIMGU_mgv1a003313mg [Erythranthe guttata] |
This contig is upended
. : . : . : . : . : . :
JMSF043G08+ CCTCAACCACGTCTCGGTGGCCGGATTGTCCAC
____________________________________________________________
consensus CCTCAACCACGTCTCGGTGGCCGGATTGTCCAC
. : . : . : . : . : . :
JMSF043G08+ TTCCGTCATATCAACATCCTCCNTCCTCCCCCTCTCCCTGCTCATTCTCCATCATCTCCT
JMSF032E17+ GCTCATTCTCCATCATCTCCT
____________________________________________________________
consensus TTCCGTCATATCAACATCCTCCNTCCTCCCCCTCTCCCTGCTCATTCTCCATCATCTCCT
. : . : . : . : . : . :
JMFS033D05+ TCTTCTTCTCGAGCTTCCTCTTCTTCTGCTCGTGCTGCGGTATATTATACACTGAAATCG
JMFS053G12+ TCTTCTCGAGCTTCCTCTTCTTCTGCTCGTGCTGCGGTATATTATACACTGAAATCG
JMSF043G08+ TCTTCTTCTCGAGCTTCCTCTTCTTCTGCTCGTGCTGCGGTATATTATACACTGAAATCG
JMSF032E17+ TCTTCTTCTCGAGCTTCCTCTTCTTCTGCTCGTGCTGCGGTATATTATACACTGAAATCG
____________________________________________________________
consensus TCTTCTTCTCGAGCTTCCTCTTCTTCTGCTCGTGCTGCGGTATATTATACACTGAAATCG
. : . : . : . : . : . :
JMFS033D05+ CGTCATTCTTCTTCAAAACATCCATATCCCCTACATAGTGATTCGCCGAGGGGTCAAATG
JMSF014O13+ TACATAGTGATTCGCCGAGGGGTCAAATG
JMFS053G12+ CGTCATTCTTCTTCAAAACATCCATATCCCCTACATAGTGATTCGCCGAGGGGTCAAATG
JMSF043G08+ CGTCATTCTTCTTCAAAACATCCATATCCCCTACATAGTGATTCGCCGAGGGGTCAAATG
JMSF032E17+ CGTCATTCTTCTTCAAAACATCCATATCCCCTACATAGTGATTCGCCGAGGGGTCAAATG
____________________________________________________________
consensus CGTCATTCTTCTTCAAAACATCCATATCCCCTACATAGTGATTCGCCGAGGGGTCAAATG
. : . : . : . : . : . :
JMFS033D05+ CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
JMSF014O13+ CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
JMFS053G12+ CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
JMSF043G08+ CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
JMSF032E17+ CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
____________________________________________________________
consensus CATAACCGTATTTCTGAAACGTATTATACTGCTCGTCGAACACGAACGGCTCAATAGCGG
. : . : . : . : . : . :
JMFS033D05+ CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGCGAGGCCGTCCTTCGCAT
JMSF014O13+ CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGCGAGGCCGTCCTTCGCAT
JMFS053G12+ CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGCGAGGCCGTCCTTCGCAT
JMSF043G08+ CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGCGAGGCCGTCCTTCGCAT
JMSF032E17+ CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGAGAGGCCGTCCTTCGCAT
____________________________________________________________
consensus CGTTTTCAACGAATCCCAGCTTGTGATTGCGGAGGCCCTGCGCGAGGCCGTCCTTCGCAT
. : . : . : . : . : . :
JMFS033D05+ AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
JMSF014O13+ AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
JMFS053G12+ AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
JMSF043G08+ AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
JMSF032E17+ AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
____________________________________________________________
consensus AAGGGTGCGCGGGGCCGTAGATTGGCGCCCAGAGCTGGTCATAAGTGGGATTATAGGAGA
. : . : . : . : . : . :
JMFS033D05+ CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
JMSF014O13+ CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
JMFS053G12+ CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
JMSF043G08+ CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
JMSF032E17+ CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
____________________________________________________________
consensus CCGTGTGTTGAGTCGGATCGAGGGGCTTCGAAAGCGCCCGAGCTGCGCCGCCGGCGACTG
. : . : . : . : . : . :
JMFS033D05+ TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
JMSF014O13+ TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
JMFS053G12+ TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
JMSF043G08+ TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
JMSF032E17+ TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
____________________________________________________________
consensus TTAGGGACAACATGGTGTCGTCGACTTTCGGAGCGGCGGATTTGGACGGGAGCGACATCC
. : . : . : . : . : . :
JMFS033D05+ GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
JMSF014O13+ GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
JMFS053G12+ GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
JMSF043G08+ GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
JMSF032E17+ GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
____________________________________________________________
consensus GAACCGGGGATGAATCTGGAGAGGAGTGACCCGAATTGTCCAATTGTTGGGAATTAGGGC
. : . : . : . : . : . :
JMFS033D05+ TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
JMSF014O13+ TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
JMFS053G12+ TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
JMSF043G08+ TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
JMSF032E17+ TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
____________________________________________________________
consensus TTTGGTTGGAGGATTGCGGTTTTTCTTCGGATTTCTGCTCTTCATCGTCGGCATACGAGC
. : . : . : . : . : . :
JMFS033D05+ GTAAGAGATCCATGATTAAAGAGAGATTGCGAGCAA
JMSF014O13+ GTAAGAGATCCATGATT
JMFS053G12+ GTAAGAGATCCATGATTAAAGAGAGATTGCGAGCAA
JMSF043G08+ GTAAGAGATCCATGATTAAAGAGAGATTGCGAGCAAGCTAACAAGAAAACCCCAGTGA
JMSF032E17+ GTAAGAGATCCATGATTAAAGAGAGATTGCGAGCAAGCTAACAAGAAAACCCCAGTGACC
____________________________________________________________
consensus GTAAGAGATCCATGATTAAAGAGAGATTGCGAGCAAGCTAACAAGAAAACCCCAGTGACC