Contig 007944:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF032E06Sequence678007944 (4)ref|XP_009766664.1|250PREDICTED: uncharacterized protein LOC104217986 [Nicotiana sylvestris]772007944 (4)ref|XP_009766664.1|228PREDICTED: uncharacterized protein LOC104217986 [Nicotiana sylvestris]
JMSF040P23Sequence692007944 (4)ref|XP_009766664.1|397PREDICTED: uncharacterized protein LOC104217986 [Nicotiana sylvestris]850007944 (4)ref|XP_009766664.1|429PREDICTED: uncharacterized protein LOC104217986 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF032E06-                                                        ATACTAGAATGTAT
rJMSF040P23-                                                   AATACATACTAGAATGTAT
                      ____________________________________________________________
consensus                                                      AATACATACTAGAATGTAT
 
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rJMSF032E06-          TCTAGTACATTAAACTACAGTACTTTGGTTGAATAAAGAAAACCCTTTTTCCTAGATCAC
rJMSF040P23-          TCTAGTACATTAAACTACAGTACTTTGGTTGAATAAAGAAAACCCTTTTTCCTAGATCAC
                      ____________________________________________________________
consensus             TCTAGTACATTAAACTACAGTACTTTGGTTGAATAAAGAAAACCCTTTTTCCTAGATCAC
 
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rJMSF032E06-          ATGATCTTTAGTTCAAACTTGAGAAATAGATACATCTTTAGCTATCTTTGCTCCTCTTTG
rJMSF040P23-          ATGATCTTTAGTTCAAACTTGAGAAATAGATACATCTTTAGCTATCTTTGCTCCTCTTTG
                      ____________________________________________________________
consensus             ATGATCTTTAGTTCAAACTTGAGAAATAGATACATCTTTAGCTATCTTTGCTCCTCTTTG
 
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rJMSF032E06-          TTTGGCCATGTAAAGTCCCATGTGATGCATGAGCTCCTGGGGATGAGGCATGATATCTTT
rJMSF040P23-          TTTGGCCATGTAAAGTCCCATGTGATGCATGAGCTCCTGGGGATGAGGCATGATATCTTT
JMSF040P23+                              ATGTGATGCATGAGCTCCTGGGGATGAGGCATGATATCTTT
JMSF032E06+                                                   GGATGAGGCATGATATCTTT
                      ____________________________________________________________
consensus             TTTGGCCATGTAAAGTCCCATGTGATGCATGAGCTCCTGGGGATGAGGCATGATATCTTT
 
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rJMSF032E06-          GGTGTTGTTTGCCATGGAGGGTGGGAAGTCAAAAGTGGCACATCCCTTTGAGCAAACAAC
rJMSF040P23-          GGTGTTGTTTGCCATGGAGGGTGGGAAGTCAAAAGTGGCACATCCCTTTGAGCAAACAAC
JMSF040P23+           GGTGTTGTTTGCCATGGAGGGTGGGAAGTCAAAAGTGGCACATCCCTTTGAGCAAACAAC
JMSF032E06+           GGTGTTGTTTGCCATGGAGGGTGGGAAGTCAAAAGTGGCACATCCCTTTGAGCAAACAAC
                      ____________________________________________________________
consensus             GGTGTTGTTTGCCATGGAGGGTGGGAAGTCAAAAGTGGCACATCCCTTTGAGCAAACAAC
 
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rJMSF032E06-          AACATCCTCCAAAGGATCAAGAAAACCTCGGTTTCTAGCCGATATGGTTGAGCAAACAAA
rJMSF040P23-          AACATCCTCCAAAGGATCAAGAAAACCTCGGTTTCTAGCCGATATGGTTGAGCAAACAAA
JMSF040P23+           AACATCCTCCAAAGGATCAAGAAAACCTCGGTTTCTAGCCGATATGGTTGAGCAAACAAA
JMSF032E06+           AACATCCTCCAAAGGATCAAGAAAACCTCGGTTTCTAGCCGATATGGTTGAGCAAACAAA
                      ____________________________________________________________
consensus             AACATCCTCCAAAGGATCAAGAAAACCTCGGTTTCTAGCCGATATGGTTGAGCAAACAAA
 
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rJMSF032E06-          ATCCAGAACACAAATGTCTGTGCAAACTCCAACCACCAGTAAAACTTGAATCTTGTTGTC
rJMSF040P23-          ATCCAGAACACAAATGTCTGTGCAAACTCCAACCACCAGTAAAACTTGAATCTTGTTGTC
JMSF040P23+           ATCCAGAACACAAATGTCTGTGCAAACTCCAACCACCAGTAAAACTTGAATCTTGTTGTC
JMSF032E06+           ATCCAGAACACAAATGTCTGTGCAAACTCCAACCACCAGTAAAACTTGAATCTTGTTGTC
                      ____________________________________________________________
consensus             ATCCAGAACACAAATGTCTGTGCAAACTCCAACCACCAGTAAAACTTGAATCTTGTTGTC
 
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rJMSF032E06-          TTTTACCCAATCAACA--AGCGTTAGAGCCGTCTTCCTCAGCTGATCCGATGTAGCCATC
rJMSF040P23-          TTTTACCCAATCAACAAAAGCGTTAGAGCCGTCTTCCTCAGCTGATCCGATGTAGCCATC
JMSF040P23+           TTTTACCCAATCAACAAAAGCGTTAGAGCCGTCTTCCTCAGCTGATCCGATGTAGCCATC
JMSF032E06+           TTTTACCCAATCAACA--AGCGTTAGAGCCGTCTTCCTCAGCTGATCCGATGTAGCCATC
                      ____________________________________________________________
consensus             TTTTACCCAATCAACAAAAGCGTTAGAGCCGTCTTCCTCAGCTGATCCGATGTAGCCATC
 
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rJMSF032E06-          ATAGCAATCTTTGTGCCTGATCCTCACATTTGGTTCATTCTCTAGCCATCTCAGAGCAGG
rJMSF040P23-          ATAGCAATCTTTGTGCCTGATCCTCACATTTGGTTCATTCTCTAGCCATCTCAGAGCAGG
JMSF040P23+           ATAGCAATCTTTGTGCCTGATCCTCACATTTGGTTCATTCTCTAGCCATCTCAGAGCAGG
JMSF032E06+           ATAGCAATCTTTGTGCCTGATCCTCACATTTGGTTCATTCTCTAGCCATCTCAGAGCAGG
                      ____________________________________________________________
consensus             ATAGCAATCTTTGTGCCTGATCCTCACATTTGGTTCATTCTCTAGCCATCTCAGAGCAGG
 
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rJMSF032E06-          AACAAGATTGGATCCATCAGAGCCAGAGATGCAGTGAGGAGGATAAGGGTGTTCAAGCTT
rJMSF040P23-          AACAAGATTGGATTCATCAGAGCCAGAGATGCAGTGAGGAGGATAAGGGTGTTCAAGCTT
JMSF040P23+           AACAAGATTGGATTCATCAGAGCCAGAGATGCAGTGAGGAGGATAAGGGTGTTCAAGCTT
JMSF032E06+           AACAAGATTGGATCCATCAGAGCCAGAGATGCAGTGAGGAGGATAAGGGTGTTCAAGCTT
                      ____________________________________________________________
consensus             AACAAGATTGGATTCATCAGAGCCAGAGATGCAGTGAGGAGGATAAGGGTGTTCAAGCTT
 
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rJMSF032E06-          GTCAGGACTGTGTGAATCAAGAAAGGCAAGAACAGGCCAACCCTTTTCACAGAACAACCT
rJMSF040P23-          GTCAGGACTGTGTGAATCAAGAAAGGCAAGAACAGGCCAACCCTTTTCACAGAACAACCT
JMSF040P23+           GTCAGGACTGTGTGAATCAAGAAAGGCAAGAACAGGCCAACCCTTTTCACAGAACAACCT
JMSF032E06+           GTCAGGACTGTGTGAATCAAGAAAGGCAAGAACAGGCCAACCCTTTTCACAGAACAACCT
                      ____________________________________________________________
consensus             GTCAGGACTGTGTGAATCAAGAAAGGCAAGAACAGGCCAACCCTTTTCACAGAACAACCT
 
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rJMSF032E06-          TGCCAGCCTAGCAGATTCATCAATCATTTCTGAAATCTGCCTGTTGGGTTCTCTTGGAGC
rJMSF040P23-          TGCCAGCCTAGCAGATTCATCAATCATTTCTGAAATCTGCCTGTTGGGTTCTCTTGGAGC
JMSF040P23+           TGCCAGCCTAGCAGATTCATCAATCATTTCTGAAATCTGCCTGTTGGGTTCTCTTGGAGC
JMSF032E06+           TGCCAGCCTAGCAGATTCATCAATCATTTCTGAAATCTGCCTGTTGGGTTCTCTTGGAGC
                      ____________________________________________________________
consensus             TGCCAGCCTAGCAGATTCATCAATCATTTCTGAAATCTGCCTGTTGGGTTCTCTTGGAGC
 
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rJMSF032E06-          CAGATTTCCAGCTCCAACAGTGCAGAAGCCATTGATGATATCTACAAGAACTAGACCAGT
rJMSF040P23-          CAGATTTCCAGCTCCAACAGTGCAGAAGCCATTGATGATATCTACAAGAACTAGACCAGT
JMSF040P23+           CAGATTTCCAGCTCCAACAGTGCAGAAGCCATTGATGATATCTACAAGAACTAGACCAGT
JMSF032E06+           CAGATTTCCAGCTCCAACAGTGCAGAAGCCATTGATGATATCTACAAGAACTAGACCAGT
                      ____________________________________________________________
consensus             CAGATTTCCAGCTCCAACAGTGCAGAAGCCATTGATGATATCTACAAGAACTAGACCAGT
 
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rJMSF032E06-          CTTGGCAGCCTCTGATATAACCACTGATTCCTCATTTA                      
rJMSF040P23-          CTTGGCAGCCTCTGATATAACCACTGATTCCTCATTTAGAGGAATTTCATTCTTAATCAG
JMSF040P23+           CTTGGCAGCCTCTGATATAACCACTGATTCCTCATTTAGAGGAATTTCATTCTTAATCAG
JMSF032E06+           CTTGGCAGCCTCTGATATAACCACTGATTCCTCATTTAGAGGAATTTCATTCTTAATCAG
                      ____________________________________________________________
consensus             CTTGGCAGCCTCTGATATAACCACTGATTCCTCATTTAGAGGAATTTCATTCTTAATCAG
 
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rJMSF040P23-          ATCAATTGTCTTTAGTACCATCTTATCAACAAACTTTCTGATTTAAGGAT          
JMSF040P23+           ATCAATTGTCTTTAGTACCATCTTATCAACAAACTTTCTGATTTAAGGAT          
JMSF032E06+           ATCAATTGTCTTTAGTACCATCTTATCAACAAACTTTCTGATTTAAGGATATGGTTTCTC
                      ____________________________________________________________
consensus             ATCAATTGTCTTTAGTACCATCTTATCAACAAACTTTCTGATTTAAGGATATGGTTTCTC