Contig 007940:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS002D12Sequence484007940 (3)ref|XP_004251275.1|2e-59PREDICTED: V-type proton ATPase subunit a1 [Solanum lycopersicum]
JMSF031E15Sequence659007940 (3)emb|CDP08938.1|5e-67unnamed protein product [Coffea canephora]812010011 (2)gb|KDO73121.1|1e-77hypothetical protein CISIN_1g003454mg [Citrus sinensis]
JMSF047O12Sequence681007940 (3)ref|XP_009606445.1|3e-83PREDICTED: V-type proton ATPase subunit a1-like isoform X1 [Nicotiana tomentosi264010011 (2)

Alignment

This contig is upended


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JMSF047O12+                                         GGTATATCAGACCGCATCTCCTGCTCCATT
                      ____________________________________________________________
consensus                                           GGTATATCAGACCGCATCTCCTGCTCCATT
 
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JMSF047O12+           AATGATGCTGAATCAGCATATTCATCATGGGAGTGCACATTTTCATCTAGTTCTGTTTCC
                      ____________________________________________________________
consensus             AATGATGCTGAATCAGCATATTCATCATGGGAGTGCACATTTTCATCTAGTTCTGTTTCC
 
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JMSF047O12+           TGAGCTGATGTATTACTCTGACTTAAAACAAGAAACTCACCAGCCTTCTGCAGTACCATC
JMSF031E15+                                     AACAAGAAACTCACCAGCCTTCTGCAGTACCATC
                      ____________________________________________________________
consensus             TGAGCTGATGTATTACTCTGACTTAAAACAAGAAACTCACCAGCCTTCTGCAGTACCATC
 
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JMSF047O12+           TTGAATTCCAATAGCTCATTATATGATTTCTGCAATTTCTCACTATTAGCATTCATTTCA
JMSF031E15+           TTGAATTCCAATAGCTCATTATGTGATTTCTGCAATTTCTCACTATTAGCATTCATTTCA
                      ____________________________________________________________
consensus             TTGAATTCCAATAGCTCATTATGTGATTTCTGCAATTTCTCACTATTAGCATTCATTTCA
 
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JMSF047O12+           ATTAGCTCATGTTCATGTTCTGCAAGTTGTATCTCCAATTCTTCTAACTCAATATCAGGT
JMSF031E15+           ATTAGCTCATGTTCATGTTCTGCAAGTTGTATCTCCAATTCTTCTAACTCAATATCAGGT
                      ____________________________________________________________
consensus             ATTAGCTCATGTTCATGTTCTGCAAGTTGTATCTCCAATTCTTCTAACTCAATATCAGGT
 
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JMSF047O12+           TGTGAAGTAGGAGAAGGAGAAAGTAGTAAACCAGCTTTGTGTATCTGATCTTTGAAAAAT
JMFS002D12+                                        ACCAGCTTTATGTATCTGATCTTTAAAAAAT
JMSF031E15+           TGTGAAGTAGGAGAAGGAGAAAGTAGTAAACCAGCTTTGTGTATCTGATCTTTGAAAAAT
                      ____________________________________________________________
consensus             TGTGAAGTAGGAGAAGGAGAAAGTAGTAAACCAGCTTTGTGTATCTGATCTTTGAAAAAT
 
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JMSF047O12+           CGCAGTTTTCTCGACATCTCTGCACATCTTTTAACCTGGTTAACAAATGTTCGTTGGAAG
JMFS002D12+           CGTAGCTTTCGCGACATTTCTGCACATCTTTTTACCTGGTTAACAAATGTCCGTTGGAAA
JMSF031E15+           CGCAGTTTTCTCGACATCTCTGCACATCTTTTAACCTGGTTAACAAATGTTCGTTGGAAG
                      ____________________________________________________________
consensus             CGCAGTTTTCTCGACATCTCTGCACATCTTTTAACCTGGTTAACAAATGTTCGTTGGAAG
 
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JMSF047O12+           GGACTCTTTTCAGCATTTAAGTCGCGGAATTGAAGAAGGCCGAGTTGGCCGAGGTAAGTG
JMFS002D12+           GGACTCTTATCTGCATTTAAATCGCGAAATTGGAGATGGCCGAGCTGGCCGAGATAAGTA
JMSF031E15+           GGACTCTTTTCAGCATTTAAGTCGCGGAATTGAAGAAGGCCGAGTTGGCCGAGGTAAGTG
                      ____________________________________________________________
consensus             GGACTCTTTTCAGCATTTAAGTCGCGGAATTGAAGAAGGCCGAGTTGGCCGAGGTAAGTG
 
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JMSF047O12+           ACGGCACGGTGAACGGACTCGACCGGGATAATGAGCTGGACAAAATTCATCTTCTCCGAC
JMFS002D12+           ATGGCGTGGTGAGCGGACTCGACGGGGATGATGAGCTGCACGAAGGTCATCTTCTCGGAG
JMSF031E15+           ACGGCACGGTGAACGGACTCGACCGGGATAATGAGCTGGACAAAATTCATCTTCTCCGAC
                      ____________________________________________________________
consensus             ACGGCACGGTGAACGGACTCGACCGGGATAATGAGCTGGACAAAATTCATCTTCTCCGAC
 
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JMSF047O12+           CGCATCAGATCCATCGGCGGCAAGTTGTCTATGTACTCCATT                  
JMFS002D12+           CGCATCAGATCCATCGGCGGCAAGTTGTCTATGTACTCCATT                  
JMSF031E15+           CGCATCAGATCCATCGGCGGCAAGTTGTCTATGTACTCCATTGTCCATCAACCGCGCAAT
                      ____________________________________________________________
consensus             CGCATCAGATCCATCGGCGGCAAGTTGTCTATGTACTCCATTGTCCATCAACCGCGCAAT
 
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JMSF031E15+           CGCTTCTCTCTTCAGATCTATGCTACACAACCGGCCACCTTCTCTCTCGGACTCTGCTAT
                      ____________________________________________________________
consensus             CGCTTCTCTCTTCAGATCTATGCTACACAACCGGCCACCTTCTCTCTCGGACTCTGCTAT
 
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JMSF031E15+           AATATATCAACCAGAGGTCTCTTTCCCGATGGTTATCTCTGTGCAATTGTGAGGAAGATT
                      ____________________________________________________________
consensus             AATATATCAACCAGAGGTCTCTTTCCCGATGGTTATCTCTGTGCAATTGTGAGGAAGATT
 
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JMSF031E15+           GTTATTGGTTGATGGCTAAGTTTCAGACTCGGCAACAAACAATAAACCAAACTGCCAACC
                      ____________________________________________________________
consensus             GTTATTGGTTGATGGCTAAGTTTCAGACTCGGCAACAAACAATAAACCAAACTGCCAACC