Contig 007934:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS031D04Sequence484007934 (4)
JMFS097D06Sequence626007934 (4)
JMFS097F06Sequence626007934 (4)
JMSF030D21Sequence604007934 (4)363019350

Alignment

This contig is upended


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JMFS097F06+                              GCAGGATCAGATCTGGCTTTCATCTGTTGTTCTGTTCAAAG
JMFS097D06+                              GCAGGATCAGATCTGGCTTTCATCTGNTGTTCTGTTCAAAG
JMSF030D21+                                                                   AAAG
                      ____________________________________________________________
consensus                                GCAGGATCAGATCTGGCTTTCATCTGTTGTTCTGTTCAAAG
 
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JMFS097F06+           GGCTGTTTGGGTTACCGAAATGAGAATAGAGAAATCATCGAGGAAAGCAGAGAGGGGCAA
JMFS097D06+           GGCTGTTTGGGTTACCGAAATGAGAATAGAGAAATCATCGAGGAAAGCAGAGAGGGGCAA
JMSF030D21+           GGCTGTTTGGGTTNCCGAAATGAGNATAGAGAAATCATCGAGGGAANCAGAGAGGGGCAN
                      ____________________________________________________________
consensus             GGCTGTTTGGGTTACCGAAATGAGAATAGAGAAATCATCGAGGAAAGCAGAGAGGGGCAA
 
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JMFS097F06+           CCACCCTTTGACAAGAAATCCCAATCTCTCTGCAAAGTCTCATTTTTTACTCTCTGGGCA
JMFS031D04+                                                    ATTTTTTACTCTCTGGGCA
JMFS097D06+           CCACCCTTTGACAAGAAATCCCAATCTCTCTGCAAAGTCTCATTTTTTACTCTCTGGGCA
JMSF030D21+           CCACCNTTTGACAAGAAATCCCAATCTCTGTGCAAAGTNTCATTTTTTACTCTNNGGGCA
                      ____________________________________________________________
consensus             CCACCCTTTGACAAGAAATCCCAATCTCTCTGCAAAGTCTCATTTTTTACTCTCTGGGCA
 
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JMFS097F06+           AACCCTAGAGGGTTCAACACCGGAATTTGGGGCTCAGATCTTGAAGCTACTCGGGCAAGA
JMFS031D04+           AACCCTAGAGGGTTCAACACCGGAATTTGGGGCTCAGATCTTGAAGCTACTCGGGCAAGA
JMFS097D06+           AACCCTAGAGGGTTCAACACCGGAATTTGGGGCTCAGATCTTGAAGCTACTCGGGCAAGA
JMSF030D21+           AACCCTAGAGGGTTCAACACCGGAATTTGGGGNTCAGATCTTGAAGNTNCTCGGGCAAGA
                      ____________________________________________________________
consensus             AACCCTAGAGGGTTCAACACCGGAATTTGGGGCTCAGATCTTGAAGCTACTCGGGCAAGA
 
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JMFS097F06+           AGAAGACCGACCACGCCATGGCTGCGAAATCCAAGGTTGCAAGCTTGAGTTGCCATCCGA
JMFS031D04+           AGAAGACCGACCACGCCATGGCTGCGAAATCCAAGGTTGCAAGCTTGAGTTGCCATCCGA
JMFS097D06+           AGAAGACCGACCACGCCATGGCTGCGAAATCCAAGGTTGCAAGCTTGAGTTGCCATCCGA
JMSF030D21+           AGAAGACCGACCACGCCATGGNTGCGAAATCCAAGGTTGCAAGCTTGAGTTGCCATNCGA
                      ____________________________________________________________
consensus             AGAAGACCGACCACGCCATGGCTGCGAAATCCAAGGTTGCAAGCTTGAGTTGCCATCCGA
 
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JMFS097F06+           GGTGCCCCGCCAAGATACGGGTCGGGTCAACTCGATGCCTGAACCAAAATTAGCCCAGAG
JMFS031D04+           GGTGCCCCGCCAAGATACGGGTCGGGTCAACTCGATGCCTGAACCAAAATTAGCCCAGAG
JMFS097D06+           GGTGCCCCGCCAAGATACGGGTCGGGTCAACTCGATGCCTGAACCAAAATTAGCCCAGAG
JMSF030D21+           GGTGCCCCGCCAAGATACGGGTCGGGTCAACTCGATNCCTGAACCAAANTTNGCCCAGAG
                      ____________________________________________________________
consensus             GGTGCCCCGCCAAGATACGGGTCGGGTCAACTCGATGCCTGAACCAAAATTAGCCCAGAG
 
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JMFS097F06+           AAATGCATAATCATCATTATCTTCACCGCCCCTTTCGTGCACCGGAAACTGCACAATGTG
JMFS031D04+           AAATGCATAATCATCATTATCTTCACCGCCCCTTTCGTGCACCGGAAACTGCACAATGTG
JMFS097D06+           AAATGCATAATCATCATTATCTTCACCGCCCCTTTCGTGCACCGGAAACTGCACAATGTG
JMSF030D21+           AAATGCATAATCATCATTATNTTCACCGCCCCTTTCGTGCACCGGAAANTGCACAATGTG
                      ____________________________________________________________
consensus             AAATGCATAATCATCATTATCTTCACCGCCCCTTTCGTGCACCGGAAACTGCACAATGTG
 
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JMFS097F06+           CTAAAAAAAAATAGCATCTATGGATCGTATATTGGCAATAAAGATCGGGGAAGAACATTG
JMFS031D04+           CTAAAAAAAAATAGCATCTATGGATCGTATATTGGCAATAAAGATCGGGGAAGAACATTG
JMFS097D06+           CTAAAAAAAAATAGCATCTATGGATCGTATATTGGCAATAAAGATCGGGGAAGAACATTG
JMSF030D21+           CTAAAAAAAAATAGCATCTATGGATCGTATATTGGCAATAAAGATCGGGGAAGANCATTG
                      ____________________________________________________________
consensus             CTAAAAAAAAATAGCATCTATGGATCGTATATTGGCAATAAAGATCGGGGAAGAACATTG
 
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JMFS097F06+           AAAAATGTAAACAGTGGAAAAGGGCGTTTGGTTGTTGTTCAAGTTGTTACTCAACTTAAA
JMFS031D04+           AAAAATGTAAACAGTGGAAAAGGGCGTTTGGTTGTTGTTCAAGTTGTTACTCAACTTAAA
JMFS097D06+           AAAAATGTAAACAGTGGAAAAGGGCGTTTGGTTGTTGTTCAAGTTGTTACTCAACTTAAA
JMSF030D21+           AAAAATGTAAACAGTGGAAAAGGGCGTTTGGTTGTTGTTCAAGTTGTTACTCAACTTAAA
                      ____________________________________________________________
consensus             AAAAATGTAAACAGTGGAAAAGGGCGTTTGGTTGTTGTTCAAGTTGTTACTCAACTTAAA
 
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JMFS097F06+           GGGCTGTTTGGGTTATTGATACGAGAATGGAAAAATCATGGGGTGAGCAGAGAGGGGCAA
JMFS031D04+           GGGCTGTTTGGGTTATTGATACGAGAATGGAAAAATCATGGGGTGAGCAGAGAGGGGCAA
JMFS097D06+           GGGCTGTTTGGGTTATTGATACGAGAATGGAAAAATCATGGGGTGAGCAGAGAGGGGCAA
JMSF030D21+           GGGCTGTTTGGGTTATTGATACGAGAATGGAAAAATCATGGGGTGAGCAGAGAGGGGCAA
                      ____________________________________________________________
consensus             GGGCTGTTTGGGTTATTGATACGAGAATGGAAAAATCATGGGGTGAGCAGAGAGGGGCAA
 
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JMFS097F06+           CCACCCTCCGAAAGAAAATCCCAAACTCTCTGCAACCCTCATTCC               
JMFS031D04+           CCACCCTCCGAAAGAAAATCCCAAACTCTCTGCAACCCTCATTCC               
JMFS097D06+           CCACCCTCCGAAAGAAAATCCCAAACTCTCTGCAACCCTCATTCC               
JMSF030D21+           CCACCCTCCGAAAGAAAATCCCAAACTNTCTGCAACCCTCATTCCTCAGTGGTAGTCGTC
                      ____________________________________________________________
consensus             CCACCCTCCGAAAGAAAATCCCAAACTCTCTGCAACCCTCATTCCTCAGTGGTAGTCGTC