| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF013L09 | Sequence | 523 | 024131 | ref|XP_009771377.1| | 3e-77 | PREDICTED: uncharacterized protein At4g14100-like [Nicotiana sylvestris] | 697 | 007921 (5) | ref|XP_010257049.1| | 4e-13 | PREDICTED: transcription factor bHLH47-like [Nelumbo nucifera] ref|XP_010257057. |
| JMSF027O22 | Sequence | 555 | 007921 (5) | ref|XP_011098609.1| | 6e-27 | PREDICTED: transcription factor bHLH47 isoform X1 [Sesamum indicum] | 142 | 007921 (5) | |||
| JMSF051E11 | Sequence | 672 | 007921 (5) | ref|XP_002283284.1| | 2e-41 | PREDICTED: transcription factor bHLH47-like [Vitis vinifera] ref|XP_002283289.1| | 793 | 007921 (5) | ref|XP_002283284.1| | 4e-41 | PREDICTED: transcription factor bHLH47-like [Vitis vinifera] ref|XP_002283289.1| |
This contig is upended
. : . : . : . : . : . :
rJMSF013L09+ CTTTC
____________________________________________________________
consensus CTTTC
. : . : . : . : . : . :
rJMSF013L09+ CGGCATGCTGCCATAGTGCTGAATGTTCGCCCAAATCGGAGCCTGAGCTCTGAAACAAGA
____________________________________________________________
consensus CGGCATGCTGCCATAGTGCTGAATGTTCGCCCAAATCGGAGCCTGAGCTCTGAAACAAGA
. : . : . : . : . : . :
rJMSF013L09+ AGATCCGCCCCCTTCGCCCATCGTCTCCGACGAACAGCTTTCCGCTCCTAACGACGGCGG
____________________________________________________________
consensus AGATCCGCCCCCTTCGCCCATCGTCTCCGACGAACAGCTTTCCGCTCCTAACGACGGCGG
. : . : . : . : . : . :
rJMSF013L09+ CGATCACGGGAGACTCGTCGCCTGAGCTTTCGGGTGATTATGCACGCCCTTATACACGAT
____________________________________________________________
consensus CGATCACGGGAGACTCGTCGCCTGAGCTTTCGGGTGATTATGCACGCCCTTATACACGAT
. : . : . : . : . : . :
rJMSF013L09+ CTCTATGATATGCCCGTCCGTTGAGCAATTAGAGATTCCTGAGACCGAACAATCAACTAC
____________________________________________________________
consensus CTCTATGATATGCCCGTCCGTTGAGCAATTAGAGATTCCTGAGACCGAACAATCAACTAC
. : . : . : . : . : . :
rJMSF013L09+ ACATGGAGTTGCAGAGTCACTGTGATGATCGTAATAGCTCATGCAACAATGTGGTTCTAT
rJMSF027O22- AT
rJMSF051E11- AT
____________________________________________________________
consensus ACATGGAGTTGCAGAGTCACTGTGATGATCGTAATAGCTCATGCAACAATGTGGTTCTAT
. : . : . : . : . : . :
rJMSF013L09+ CCTCTGTTGTGCTTGATGCCAC-ATTGAGCACACGAGATGGCCATGAATCTGAAGGTGAT
rJMSF027O22- CCTCGGTTGTGCTTGATGCCACGATTGAGCACACGAGATGGCCATGAATCCGAGGGTGAT
rJMSF051E11- CCTCTGTTGTGCTTGATGCCACG-TTGAGCACACGAGATGGCCATGAATCCGAGGGTGAT
____________________________________________________________
consensus CCTCTGTTGTGCTTGATGCCACGATTGAGCACACGAGATGGCCATGAATCCGAGGGTGAT
. : . : . : . : . : . :
rJMSF013L09+ GGGTATCGTGGGCAAGGTCTACTCACACTGGGTGGGAGGTTTTGCAAAGCCTCTGCGTTG
rJMSF027O22- GGGNATCGAGGGCGANGTCTACTCACACTGGGTGGGAGG
rJMSF051E11- GGGTATCGAGGGCGAGGTCTACTCACACTGGGTGGGAGGTTCTGCAAAGCCTCGGGGTTG
JMSF051E11+ GGGTGGGAGGTTCTGCAAAGCCTCGGGGTTG
____________________________________________________________
consensus GGGTATCGAGGGCGAGGTCTACTCACACTGGGTGGGAGGTTCTGCAAAGCCTCGGGGTTG
. : . : . : . : . : . :
rJMSF013L09+ TCAGCCGTGTTGTACATTTGAAGGTCATTGTGTAAAGGCACAACCAAAACCGGTCTGGTA
rJMSF051E11- TCAGCCGTGCTGTACATTTGAAGGTCATTGTGTAATGGCACAACCAAAACGGGCCCGGTA
JMSF051E11+ TCAGCCGTGCTGTACATTTGAAGGTCATTGTGTAATGGCACAACCAAAACGGGCCCGGTA
____________________________________________________________
consensus TCAGCCGTGCTGTACATTTGAAGGTCATTGTGTAATGGCACAACCAAAACGGGCCCGGTA
. : . : . : . : . : . :
rJMSF013L09+ GCTGCAGCTGAGGATGATGCATAATCATGTATACTTGTTCTAAGATGGTCCTCTGTCAGC
rJMSF051E11- GCTGCAGCTGAGGATGATGCATAATCATGTATACTTGTTCTAAGATGGTCCTCTGTCAGC
JMSF051E11+ GCTGCAGCTGAGGATGATGCATAATCATGTATACTTGTTCTAAGATGGTCCTCTGTCAGC
____________________________________________________________
consensus GCTGCAGCTGAGGATGATGCATAATCATGTATACTTGTTCTAAGATGGTCCTCTGTCAGC
. : . : . : . : . : . :
rJMSF013L09+ TGCGGCGGAGAAGTAATGTTATCAATGTTGGTAGTTTGGGAACGAATTGTTTCGTTTATT
rJMSF051E11- TGTGGCGGAGAAGT---------AATGTTGGTAGTTTGGGAACGAATTGTTTCGTTTATT
JMSF051E11+ TGTGGCGGAGAAGT---------AATGTTGGTAGTTTGGGAACGAATTGTTTCGTTTATT
____________________________________________________________
consensus TGTGGCGGAGAAGT---------AATGTTGGTAGTTTGGGAACGAATTGTTTCGTTTATT
. : . : . : . : . : . :
rJMSF013L09+ TCAGTCTGCAGGTTCTCAATCTGGGCTTCCAGCGCAAATTTTTCTTCTTTAAGCTCATCC
rJMSF051E11- TTAGTCAGCAGGTTCTCAATCTGGACTTCCAACGCAATTTTTTCTTCTTTAAGCTCATCC
JMSF051E11+ TTAGTCAGCAGGTTCTCAATCTGGACTTCCAACGCAATTTTTTCTTCTTTAAGCTCATCC
JMSF027O22+ TTCTTTAAGCTCATCC
____________________________________________________________
consensus TTAGTCAGCAGGTTCTCAATCTGGACTTCCAACGCAATTTTTTCTTCTTTAAGCTCATCC
. : . : . : . : . : . :
rJMSF013L09+ TTCTCAANCAGTCATGTAATGAGATTCTGAATT
rJMSF051E11- TTCTCAA-CAATCATGTAATGAGATTCTGAATTAAGAGCAACGTTCTCCTTTCTGAGATT
JMSF051E11+ TTCTCAA-CAATCATGTAATGAGATTCTGAATTAAGAGCAACGTTCTCCTTTCTGAGATT
JMSF027O22+ TTCTCAA-CAATCATGTAATGAGATTCTGAATTAAGAGCAACGTTCTCCTTTCTGAGATT
____________________________________________________________
consensus TTCTCAA-CAATCATGTAATGAGATTCTGAATTAAGAGCAACGTTCTCCTTTCTGAGATT
. : . : . : . : . : . :
rJMSF051E11- ATCAACCTGCACAATTAGTTCCCTCACTAACCGCATCGTTTCTTTTAATATGCAAGCCTT
JMSF051E11+ ATCAACCTGCACAATTAGTTCCCTCACTAACCGCATCGTTTCTTTTAATATGCAAGCCTT
JMSF027O22+ ATCAACCTGCACAATTAGTTCCCTCACTAACCGCATCGTTTCTTTTAATATGCAAGCCTT
____________________________________________________________
consensus ATCAACCTGCACAATTAGTTCCCTCACTAACCGCATCGTTTCTTTTAATATGCAAGCCTT
. : . : . : . : . : . :
rJMSF051E11- TCCATAATTCTGATGAGATGGATCCAAAACGTTGGCTAGCTCTGCAAATAGCACATTCAT
JMSF051E11+ TCCATAATTCTGATGAGATGGATCCAAAACGTTGGCTAGCTCTGCAAATAGCACATTCAT
JMSF027O22+ TCCATAATTCTGATGAGATGGATCCAAAACGTTGGCTAGCTCTGCAAATAGCACATTCAT
____________________________________________________________
consensus TCCATAATTCTGATGAGATGGATCCAAAACGTTGGCTAGCTCTGCAAATAGCACATTCAT
. : . : . : . : . : . :
rJMSF051E11- ATTATCACGCTTCTGTTTCTCCCTCTCGGCCTTGTGGATTTTTCTAGGAACTTTATTGCT
JMSF051E11+ ATTATCACGCTTCTGTTTCTCCCTCTCGGCCTTGTGGATTTTTCTAGGAACTTTATTGCT
JMSF027O22+ ATTATCACGCTTCTGTTTCTCCCTCTCGGCCTTGTGGATTTTTCTAGGAACTTTATTGCT
____________________________________________________________
consensus ATTATCACGCTTCTGTTTCTCCCTCTCGGCCTTGTGGATTTTTCTAGGAACTTTATTGCT
. : . : . : . : . : . :
rJMSF051E11- TGGCTCCCTCTCAGCCTCGTGGTTTCTAGGAG-GTTATCATGTTTTCTTTTTCTGGAGCT
JMSF051E11+ TGGCTCCCTCTCAGCCTCGTGGTTTCTAGGAG-GTTATCATGTTTTCTTTTTCTGGAGCT
JMSF027O22+ TGGCTCCCTCTCAGCCTCGTGGTTTCTAGGAGCTTTATCATGTTTTCTTTTTCTGGAGCT
____________________________________________________________
consensus TGGCTCCCTCTCAGCCTCGTGGTTTCTAGGAG-GTTATCATGTTTTCTTTTTCTGGAGCT
. : . : . : . : . : . :
rJMSF051E11- GCTGAAAACATGAACAGCGCAATCGTTAACA
JMSF051E11+ GCTGAAAACATGAACAGCGCAATCGTTAACAGGAGTAGAAGCTTCACTAGCCATTCTCTG
JMSF027O22+ GCTGAAAACATGAACAGCGCAATCGTTAACAGGAGTAGAAGCTTCACTAGCCATTCTCTG
____________________________________________________________
consensus GCTGAAAACATGAACAGCGCAATCGTTAACAGGAGTAGAAGCTTCACTAGCCATTCTCTG
. : . : . : . : . : . :
JMSF051E11+ AGTATACGCCAATCAACCAGATTCCAAAACCTGGCGAGATTGGGAGACGAC
JMSF027O22+ AGTATACGCCAATCAACCAGATTCCAAAACCTGGCGAGATTGGGAGACGACGGAGGAAAG
____________________________________________________________
consensus AGTATACGCCAATCAACCAGATTCCAAAACCTGGCGAGATTGGGAGACGACGGAGGAAAG
. : . : . : . : . : . :
JMSF027O22+ CTGGCAGAGGTGTTTGCTACCATTTTTATATGCCTTATCCATAATTATTAATGCAGACGG
____________________________________________________________
consensus CTGGCAGAGGTGTTTGCTACCATTTTTATATGCCTTATCCATAATTATTAATGCAGACGG
. : . : . : . : . : . :
JMSF027O22+ ACAGAAAGCCATGAGAGGGCGGAGTGCCCGAACCACGCGGCGGCGTGTGGCGAGCACCCC
____________________________________________________________
consensus ACAGAAAGCCATGAGAGGGCGGAGTGCCCGAACCACGCGGCGGCGTGTGGCGAGCACCCC