Contig 007919:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF028K06+                                                                     TA
rJMSF027L24-                                                          TATACTCCGNTA
                      ____________________________________________________________
consensus                                                             TATACTCCGNTA
 
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JMFF028K06+           TATGATATTGCATTATAAGTTTATTACACAACTACCTTAACCATACTACAATTACGTAAA
rJMFF028K06-                                        ACTACCTTAACCATACTACAATTACGTAAA
rJMSF027L24-          TATGATATTGCATTATAAGTTTATTACACAACTACCTTAACCATACTACAATTACGTAAA
                      ____________________________________________________________
consensus             TATGATATTGCATTATAAGTTTATTACACAACTACCTTAACCATACTACAATTACGTAAA
 
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JMFF028K06+           ATTAAGCACCAACTGCAACACACGTACAAGGAAATAAAAAAGGAAAAAAGAAAAAGAAAA
rJMFF028K06-          ATTAAGCACCAACTGCAACACACGTACAAGGAAATAAAAAAGGAAAAAAGAAAAAGAAAA
rJMSF027L24-          ATTAAGCACCAACTGCAACACACGTACAAGGAAATAAAAAAGGAAAAAAGAAAAAGAAAA
                      ____________________________________________________________
consensus             ATTAAGCACCAACTGCAACACACGTACAAGGAAATAAAAAAGGAAAAAAGAAAAAGAAAA
 
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JMFF028K06+           ACTAAAGCTAGTTAACGTTAACAAGAACCACACAATACATAGTTAAGCTGTCATAACTAA
rJMFF028K06-          ACTAAAGCTAGTTAACGTTAACAAGAACCACACAATACATAGTTAAGCTGTCATAACTAA
rJMSF027L24-          ACTAAAGCTAGTTAACGTTAACAAGAACCACACAATACATAGTTAAGCTGTCATAACTAA
JMSF027L24+                                           CAATACATAGTTAAGCTGTCATAANTAA
                      ____________________________________________________________
consensus             ACTAAAGCTAGTTAACGTTAACAAGAACCACACAATACATAGTTAAGCTGTCATAACTAA
 
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JMFF028K06+           TTAAACTGCTGCAACCATCATTAAGTTCACGGTGAACGTCCACCGTTGCCGCCGGAGGAC
rJMFF028K06-          TTAAACTGCTGCAACCATCATTAAGTTCACGGTGAACGTCCACCGTTGCCGCCGGAGGAC
rJMSF027L24-          TTAAACTGCTGCAACCATCATTAAGTTCACGGTGAACGTCCACCGTTGCCGCCGGAGGAC
JMSF027L24+           TTAAACTGNTGCAACCATCATTAAGTTCACGGTGAACGTCCACCGTTGCCGCCGGAGGAC
                      ____________________________________________________________
consensus             TTAAACTGCTGCAACCATCATTAAGTTCACGGTGAACGTCCACCGTTGCCGCCGGAGGAC
 
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JMFF028K06+           CCACCCGCGCCACCTCCGGAACCGCCTCCATTACCGCCGCCGCCGCTCCCGGCTCCATAC
rJMFF028K06-          CCACCCGCGCCACCTCCGGAACCGCCTCCATTACCGCCGCCGCCGCTCCCGGCTCCATAC
rJMSF027L24-          CCACCCGCGCCACCTCCGGAACCGCCTCCATTACCGCCGCCGCCGCTCCCGGCTCCATAC
JMSF027L24+           CCACCCGCGCCACCTCCGGAACCGCCTCCATTACCGCCGCCGCCGCTCCCGGCTCCATAC
                      ____________________________________________________________
consensus             CCACCCGCGCCACCTCCGGAACCGCCTCCATTACCGCCGCCGCCGCTCCCGGCTCCATAC
 
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JMFF028K06+           CCACCTCCATGAGCGCCACCGCTTCCCGAACCATACCCGTAGCCTGACCCAGACCCGCTA
rJMFF028K06-          CCACCTCCATGAGCGCCACCGCTTCCCGAACCATACCCGTAGCCTGACCCAGACCCGCTA
rJMSF027L24-          CCACCTCCATGAGCGCCACCGCTTCCCGAACCATACCCGTAGCCTGACCCAGACCCGCTA
JMSF027L24+           CCACCTCCATGAGCGCCACCGCTTCCCGAACCATACCCGTAGCCTGACCCAGACCCGCTA
                      ____________________________________________________________
consensus             CCACCTCCATGAGCGCCACCGCTTCCCGAACCATACCCGTAGCCTGACCCAGACCCGCTA
 
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JMFF028K06+           CCCGAACC                                                    
rJMFF028K06-          CCCGAACC                                                    
rJMSF027L24-          CCCGAACCCGATCCGAA-CCCCCATCCCCTCCCAAACCCATTAGGAGATCTTCCAGAGCC
JMSF027L24+           CCCGAACCCGATCCGAACCCCCCATCCCCTCCCAAACCCATTAGGAGATCTTCCAGAGCC
                      ____________________________________________________________
consensus             CCCGAACCCGATCCGAACCCCCCATCCCCTCCCAAACCCATTAGGAGATCTTCCAGAGCC
 
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rJMSF027L24-          CGACCCGTATCCGTACCCCGAGCCCGGGCTCGAGCCCCACCCCCAACTATAGTCCCAGTT
JMSF027L24+           CGACCCGTATCCGTACCCCGAGCCCGGGCTCGAGCCCCACCCCCAACTATAGTCCCAGTT
                      ____________________________________________________________
consensus             CGACCCGTATCCGTACCCCGAGCCCGGGCTCGAGCCCCACCCCCAACTATAGTCCCAGTT
 
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rJMSF027L24-          CGGGCCGTGGGCCGAGCCGCTACCACTCGTCGGCGCATTCCCCGTAGGCTCCCCCGAGGA
JMSF027L24+           CGGGCCGTGGGCCGAGCCGCTACCACTCGTCGGCGCATTCCCCGTAGGCTCCCCCGAGGA
                      ____________________________________________________________
consensus             CGGGCCGTGGGCCGAGCCGCTACCACTCGTCGGCGCATTCCCCGTAGGCTCCCCCGAGGA
 
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rJMSF027L24-          AGACGACAACGTTTCCCGTGCATTCATCTTCCGTCCGCCGCTGAACCCGCCGGCGTTGAG
JMSF027L24+           AGACGACAACGTTTCCCGTGCATTCATCTTCCGTCCGCCGCTGAACCCGCCGGCGTTGAG
                      ____________________________________________________________
consensus             AGACGACAACGTTTCCCGTGCATTCATCTTCCGTCCGCCGCTGAACCCGCCGGCGTTGAG
 
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rJMSF027L24-          GGCCAAAGAAGGGTCGCCGGAGATGAAGACAAGGAAAAGTAGGAGCAGAGAG-AATGCAG
JMSF027L24+           GGCCAAAGAAGGGTCGCCGGAGATGAAGACAAGGAAAAGTAGGAGCAGAGAGAAATGCAG
                      ____________________________________________________________
consensus             GGCCAAAGAAGGGTCGCCGGAGATGAAGACAAGGAAAAGTAGGAGCAGAGAGAAATGCAG
 
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rJMSF027L24-          AAGAGAACTGGGTTTCATTTTAAGGATTTTGAAGGTCATAAAAAAAGG            
JMSF027L24+           AAGAGAACTGGGTTTCATTTTAAGGATTTTGAAGGTCATAAAAAAAGGTGAAGAATGGTC
                      ____________________________________________________________
consensus             AAGAGAACTGGGTTTCATTTTAAGGATTTTGAAGGTCATAAAAAAAGGTGAAGAATGGTC