Contig 007917:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN033I19Sequence618007917 (4)ref|XP_009795620.1|6e-86PREDICTED: inner membrane protein PPF-1, chloroplastic [Nicotiana sylvestris] r
JMSF021O08Sequence690007917 (4)ref|XP_009795620.1|2e-91PREDICTED: inner membrane protein PPF-1, chloroplastic [Nicotiana sylvestris] r754008447 (4)ref|XP_009604104.1|7e-93PREDICTED: nuclear cap-binding protein subunit 2-like [Nicotiana tomentosiformi
JMSF024C13Sequence692007917 (4)ref|XP_009795620.1|3e-101PREDICTED: inner membrane protein PPF-1, chloroplastic [Nicotiana sylvestris] r738002878 (2)ref|XP_011042682.1|2e-64PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Populus euphratica
JMSF027I10Sequence609007917 (4)ref|XP_009795620.1|2e-69PREDICTED: inner membrane protein PPF-1, chloroplastic [Nicotiana sylvestris] r730002878 (2)ref|XP_011042682.1|2e-53PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Populus euphratica

Alignment

This contig is upended


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JMSF024C13+                                                                CTTGATA
                      ____________________________________________________________
consensus                                                                  CTTGATA
 
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JMFN033I19+                                                           CAGAGGATTAAC
JMSF024C13+           CAAACCTATCCACACTGGTATTGTAGCCAATGTTGGGAAGCATCCTGCCAGAGGATTAAC
JMSF021O08+                                       AATGTTGGGAAGCATCCTGCCAGAGGATTAAC
                      ____________________________________________________________
consensus             CAAACCTATCCACACTGGTATTGTAGCCAATGTTGGGAAGCATCCTGCCAGAGGATTAAC
 
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JMFN033I19+           ACCTGCCTGTCGATACAAGCGTGAAGTCTCAAGTTGTATTCTTTCCTGGTTTCCAGCATA
JMSF024C13+           ACCTGCCTGTCGATACAAGCGTGAAGTCTCAAGTTGTATTCTTTCCTGGTTTCCAGCATA
JMSF021O08+           ACCTGCCTGTCGATACAAGCGTGAAGTCTCAAGTTGTATTCTTTCCTGGTTTCCAGCATA
JMSF027I10+                                                              TCCAGCATA
                      ____________________________________________________________
consensus             ACCTGCCTGTCGATACAAGCGTGAAGTCTCAAGTTGTATTCTTTCCTGGTTTCCAGCATA
 
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JMFN033I19+           TCTTTGTTGGATTGCTTTGATTTTTGGTTGGAGATTTTGCATTGCCAGTGTTGATTCAAC
JMSF024C13+           TCTTTGTTGGATTGCTTTGATTTTTGGTTGGAGATTTTGCATTGCCAGTGTTGATTCAAC
JMSF021O08+           TCTTTGTTGGATTGCTTTGATTTTTGGTTGGAGATTTTGCATTGCCAGTGTTGATTCAAC
JMSF027I10+           TCTTTGTTGGATTGCTTTGATTTTTGGTTGGAGATTTTGCATTGCCAGTGTTGATTCAAC
                      ____________________________________________________________
consensus             TCTTTGTTGGATTGCTTTGATTTTTGGTTGGAGATTTTGCATTGCCAGTGTTGATTCAAC
 
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JMFN033I19+           CTGTTGCTTTGTCAAAGGAAGTGTGGCGACTTTTACTATAATCGTAAGCAATATAATGGC
JMSF024C13+           CTGTTGCTTTGTCAAAGGAAGTGTGGCGACTTTTACTATAATCGTAAGCAATATAATGGC
JMSF021O08+           CTGTTGCTTTGTCAAAGGAAGTGTGGCGACTTTTACTATAATCGTAAGCAATATAATGGC
JMSF027I10+           CTGTTGCTTTGTCAAAGGAAGTGTGGCGACTTTTACTATAATCGTAAGCAATATAATGGC
                      ____________________________________________________________
consensus             CTGTTGCTTTGTCAAAGGAAGTGTGGCGACTTTTACTATAATCGTAAGCAATATAATGGC
 
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JMFN033I19+           AAATCCGTAAGAATATGGAATGTGCACAGCTTCGAGTCCACTCTTCAGTATCTTTAGTAC
JMSF024C13+           AAATCCGTAAGAATATGGAATGTGCACAGCTTCGAGTCCACTCTTCAGTATCTTTAGTAC
JMSF021O08+           AAATCCGTAAGAATATGGAATGTGCACAGCTTCGAGTCCACTCTTCAGTATCTTTAGTAC
JMSF027I10+           AAATCCGTAAGAATATGGAATGTGCACAGCTTCGAGTCCACTCTTCAGTATCTTTAGTAC
                      ____________________________________________________________
consensus             AAATCCGTAAGAATATGGAATGTGCACAGCTTCGAGTCCACTCTTCAGTATCTTTAGTAC
 
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JMFN033I19+           AAATTCCATGGAGTCGGAAATGAATCCGAACCAACCGTTATTTTTCTGAGGAACAGCGGC
JMSF024C13+           AAATTCCATGGAGTCGGAAATGAATCCGAACCAACCGTTATTTTTCTGAGGAACAGCGGC
JMSF021O08+           AAATTCCATGGAGTCGGAAATGAATCCGAACCAACCGTTATTTTTCTGAGGAACAGCGGC
JMSF027I10+           AAATTCCATGGAGTCGGAAATGAATCCGAACCAACCGTTATTTTTCTGAGGAACAGCGGC
                      ____________________________________________________________
consensus             AAATTCCATGGAGTCGGAAATGAATCCGAACCAACCGTTATTTTTCTGAGGAACAGCGGC
 
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JMFN033I19+           GGGGTCTCCTGAAGCAGCGCCACCGGTGGCAGCGTCAGTAGCGACGGCGGCATCGGCAAT
JMSF024C13+           GGGGTCTCCTGAAGCAGCGCCACCGGTGGCAGCGTCAGTAGCGACGGCGGCATCGGCAAT
JMSF021O08+           GGGGTCTCCTGAAGCAGCGCCACCGGTGGCAGCGTCAGTAGCGACGGCGGCATCGGCAAT
JMSF027I10+           GGGGTCTCCTGAAGCAGCGCCACCGGTGGCAGCGTCAGTAGCGACGGCGGCATCGGCAAT
                      ____________________________________________________________
consensus             GGGGTCTCCTGAAGCAGCGCCACCGGTGGCAGCGTCAGTAGCGACGGCGGCATCGGCAAT
 
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JMFN033I19+           TGTATACAGAAGACTCTCCGCTCGAGTTAAAATAGCGCCGAAGTCGACAGCAGAGTTGAG
JMSF024C13+           TGTATACAGAAGACTCTCCGCTCGAGTTAAAATAGCGCCGAAGTCGACAGCAGAGTTGAG
JMSF021O08+           TGTATACAGAAGACTCTCCGCTCGAGTTAAAATAGCGCCGAAGTCGACAGCAGAGTTGAG
JMSF027I10+           TGTATACAGAAGACTCTCCGCTCGAGTTAAAATAGCGCCGAAGTCGACAGCAGAGTTGAG
                      ____________________________________________________________
consensus             TGTATACAGAAGACTCTCCGCTCGAGTTAAAATAGCGCCGAAGTCGACAGCAGAGTTGAG
 
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JMFN033I19+           GGAGTGAATAGGAGGGAGGTCATGGAAGCTGAATTTCACTCTGGTGGAGACGAGTCGACG
JMSF024C13+           GGAGTGAATAGGAGGGAGGTCATGGAAGCTGAATTTCACTCTGGTGGAGACGAGTCGACG
JMSF021O08+           GGAGTGAATAGGAGGGAGGTCATGGAAGCTGAATTTCACTCTGGTGGAGACGAGTCGACG
JMSF027I10+           GGAGTGAATAGGAGGGAGGTCATGGAAGCTGAATTTCACTCTGGTGGAGACGAGTCGACG
                      ____________________________________________________________
consensus             GGAGTGAATAGGAGGGAGGTCATGGAAGCTGAATTTCACTCTGGTGGAGACGAGTCGACG
 
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JMFN033I19+           GTGCGGAAAGCTGCCATGGCGGGAGAAAGACGGCAACGGTGTTCCGAGAAACGACGGCGA
JMSF024C13+           GTGCGGAAAGCTGCCATGGCGGGAGAAAGACGGCAACGGTGTTCCGAGAAACGACGGCGA
JMSF021O08+           GTGCGGAAAGCTGCCATGGCGGGAGAAAGACGGCAACGGTGTTCCGAGAAACGACGGCGA
JMSF027I10+           GTGCGGAAAGCTGCCATGGCGGGAGAAAGACGGCAACGGTGTTCCGAGAAACGACGGCGA
                      ____________________________________________________________
consensus             GTGCGGAAAGCTGCCATGGCGGGAGAAAGACGGCAACGGTGTTCCGAGAAACGACGGCGA
 
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JMFN033I19+           AGAAATTAACGTTTTCGCCATGGATTCGTCCGGGAGAGTTGAGAGTTCAGTTCAGCTTTC
JMSF024C13+           AGAAATTAACGTTTTCGCCATGGATTCGTCCGGGAGAGTTGAGAGTTCAGTTCAGCTTTC
JMSF021O08+           AGAAATTAACGTTTTCGCCATGGATTCGTCCGGGAGAGTTGAGAGTTCAGTTCAGCTTTC
JMSF027I10+           AGAAATTAACGTTTTCGCCATGGATTCGTCCGGGAGAGTTGAGAGTTCAGTTCAGCTTTC
                      ____________________________________________________________
consensus             AGAAATTAACGTTTTCGCCATGGATTCGTCCGGGAGAGTTGAGAGTTCAGTTCAGCTTTC
 
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JMFN033I19+           GCATGA                                                      
JMSF024C13+           GCATGAGTGGAGACGGAGAAATCT                                    
JMSF021O08+           GCATGAGTGGAGACGGAGAAATCTGGAGGATGAGGAGGAGAGAGCTAGAGAGGGAAT   
JMSF027I10+           GCATGAGTGGAGACGGAGAAATCTGGAGGATGAGGAGGAGAGAGCTAGAGAGGGAATACC
                      ____________________________________________________________
consensus             GCATGAGTGGAGACGGAGAAATCTGGAGGATGAGGAGGAGAGAGCTAGAGAGGGAATACC