| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007I11 | Sequence | 508 | 007916 (10) | ref|XP_002272496.2| | 2e-39 | PREDICTED: 60S ribosomal protein L38 [Vitis vinifera] | 470 | 007916 (10) | ref|XP_002272496.2| | 1e-39 | PREDICTED: 60S ribosomal protein L38 [Vitis vinifera] |
| JMFF010B11 | Sequence | 508 | 007916 (10) | ref|XP_002272496.2| | 2e-39 | PREDICTED: 60S ribosomal protein L38 [Vitis vinifera] | 479 | 007916 (10) | ref|XP_002272496.2| | 1e-39 | PREDICTED: 60S ribosomal protein L38 [Vitis vinifera] |
| JMFF010G13 | Sequence | 468 | 007916 (10) | emb|CBI17596.3| | 8e-40 | unnamed protein product [Vitis vinifera] | 432 | 007916 (10) | emb|CBI17596.3| | 5e-40 | unnamed protein product [Vitis vinifera] |
| JMFF014B18 | Sequence | 506 | 007916 (10) | ref|XP_002272496.2| | 4e-40 | PREDICTED: 60S ribosomal protein L38 [Vitis vinifera] | 471 | 007916 (10) | ref|XP_002272496.2| | 3e-40 | PREDICTED: 60S ribosomal protein L38 [Vitis vinifera] |
| JMSF027I03 | Sequence | 508 | 007916 (10) | emb|CBI17596.3| | 3e-39 | unnamed protein product [Vitis vinifera] | 454 | 007916 (10) | emb|CBI17596.3| | 2e-39 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMFF007I11+ TTTTTTTTTTGCCACATATATGATACCAAACTTAGATAGG
JMFF010B11+ TTTTTTTTTTGCCACATATATGATACCAAACTTAGATAGG
rJMFF007I11- GG
rJMFF010B11- ACTTAGATAGG
JMFF014B18+ AAACTTAGATAGG
JMSF027I03+ AAACTTAGATAGG
____________________________________________________________
consensus TTTTTTTTTTGCCACATATATGATACCAAACTTAGATAGG
. : . : . : . : . : . :
JMFF007I11+ AATAACATAGGCTGATTAAAATCCATAACAAAACTAAACATCATTGCAATTTATAATATC
JMFF010B11+ AATAACATAGGCTGATTAAAATCCATAACAAAACTAAACATCATTGCAATTTATAATATC
rJMFF007I11- AATAACATAGGCTGATTAAAATCCATAACAAAACTAAACATCATTGCAATTTATAATATC
rJMFF010B11- AATAACATAGGCTGATTAAAATCCATAACAAAACTAAACATCATTGCAATTTATAATATC
JMFF014B18+ AATAACATAGGCTGATTAAAATCCATAACAAAACTAAACATCATTGCAATTTATAATATC
JMFF010G13+ GATTAAAATCCATAACAAAACTAAACATCATTGCAATTTATAATATC
rJMFF014B18- CATAGGCTGATTAAAATCCATAACAAAACTAAACATCATTGCAATTTATAATATC
rJMSF027I03- TAACAAAACTAAACATCATTGCAATTTATAATATC
rJMFF010G13- CATCATTGCAATTTATAATATC
JMSF027I03+ AATAACATAGGCTGATTAAAATCCATAACAAAACTAAACATCATTGCAATTTATAATATC
____________________________________________________________
consensus AATAACATAGGCTGATTAAAATCCATAACAAAACTAAACATCATTGCAATTTATAATATC
. : . : . : . : . : . :
JMFF007I11+ ATAACATCATAATTTAACTACTGGTTGGACAAAAAACCACTACACA-TCAACTGTCGATT
JMFF010B11+ ATAACATCATAATTTAACTACTGGTTGGACAAAAAACCACTACACA-TCAACTGTCGATT
rJMFF007I11- ATAACATCATAATTTAACTACTGGTTGGACAAAAAACCACTACACA-TCAACTGTCGATT
rJMFF010B11- ATAACATCATAATTTAACTACTGGTTGGACAAAAAACCACTACACA-TCAACTGTCGATT
JMFF014B18+ ATAACATCATAATTTAACTACTGGTTGGACAAAAAACCACTACACATTCAACTGTCGATT
JMFF010G13+ ATAACATCATAATTTAACTACTGGTTGGACAAAAAACCACTACACA-TCAACTGTCGATT
rJMFF014B18- ATAACATCATAATTTAACTACTGGTTGGACAAAAAACCACTACACA-TCAACTGTCGATT
rJMSF027I03- ANAACATCATAATTTAACTACTGGTTGGACAAAAAACCACTACACA-TCAACTGTCGATT
rJMFF010G13- ATAACATCATAATTTAACTACTGGTTGGACAAAAAACCACTACACA-TCAACTGTCGATT
JMSF027I03+ ATAACATCATAATTTAACTACTGGTTGGACAAAAAACCACTACACA-TCAACTGTCGATT
____________________________________________________________
consensus ATAACATCATAATTTAACTACTGGTTGGACAAAAAACCACTACACA-TCAACTGTCGATT
. : . : . : . : . : . :
JMFF007I11+ TCAATAGTTTGATTGACTGTGAACAATTTCTACTCAAAAAGTAATGAAAACCATAAAGAA
JMFF010B11+ TCAATAGTTTGATTGACTGTGAACAATTTCTACTCAAAAAGTAATGAAAACCATAAAGAA
rJMFF007I11- TCAATAGTTTGATTGACTGTGAACAATTTCTACTCAAAAAGTAATGAAAACCATAAAGAA
rJMFF010B11- TCAATAGTTTGATTGACTGTGAACAATTTCTACTCAAAAAGTAATGAAAACCATAAAGAA
JMFF014B18+ TCAATAGTTTGATTGACTGTGAACAATTTCTACTCAAAAAGTAATGAAAACCATAAAGAA
JMFF010G13+ TCAATAGTTTGATTGACTGTGAACAATTTCTACTCAAAAAGTAATGAAAACCATAAAGAA
rJMFF014B18- TCAATAGTTTGATTGACTGTGAACAATTTCTACTCAAAAAGTAATGAAAACCATAAAGAA
rJMSF027I03- TCAATAGTTTGATTGACTGTGAACAATTTCTACTCANAAAGTAATGAAAACCATAAAGAA
rJMFF010G13- TCAATAGTTTGATTGACTGTGAACAATTTCTACTCAAAAAGTAATGAAAACCATAAAGAA
JMSF027I03+ TCAATAGTTTGATTGACTGTGAACAATTTCTACTCAAAAAGTAATGAAAACCATAAAGAA
____________________________________________________________
consensus TCAATAGTTTGATTGACTGTGAACAATTTCTACTCAAAAAGTAATGAAAACCATAAAGAA
. : . : . : . : . : . :
JMFF007I11+ GAATAGCCCTTCAAAGGTAATACTACTGATGAAGAAGCCCTTCACAGGTCTTGAACACTC
JMFF010B11+ GAATAGCCCTTCAAAGGTAATACTACTGATGAAGAAGCCCTTCACAGGTCTTGAACACTC
rJMFF007I11- GAATAGCCCTTCAAAGGTAATACTACTGATGAAGAAGCCCTTCACAGGTCTTGAACACTC
rJMFF010B11- GAATAGCCCTTCAAAGGTAATACTACTGATGAAGAAGCCCTTCACAGGTCTTGAACACTC
JMFF014B18+ GAATAGCCCTTCAAAGGTAATACTACTGATGAAGAAGCCCTTCACAGGTCTTGAACACTC
JMFF010G13+ GAATAGCCCTTCAAAGGTAATACTACTGATGAAGAAGCCCTTCACAGGTCTTGAACACTC
rJMFF014B18- GAATAGCCCTTCAAAGGTAATACTACTGATGAAGAAGCCCTTCACAGGTCTTGAACACTC
rJMSF027I03- GAATAGCCCTTCAAAGGTAATACTACTGATGAAGAAGCCCTTCACAGGTCTTGAACACTC
rJMFF010G13- GAATAGCCCTTCAAAGGTAATACTACTGATGAAGAAGCCCTTCACAGGTCTTGAACACTC
JMSF027I03+ GAATAGCCCTTCAAAGGTAATACTACTGATGAAGAAGCCCTTCACAGGTCTTGAACACTC
____________________________________________________________
consensus GAATAGCCCTTCAAAGGTAATACTACTGATGAAGAAGCCCTTCACAGGTCTTGAACACTC
. : . : . : . : . : . :
JMFF007I11+ AAACCTGGAGGAAGAGATTGCTTCAGTTTGTCTGCTTTCTCCGAGTCAAACACACACAGG
JMFF010B11+ AAACCTGGAGGAAGAGATTGCTTCAGTTTGTCTGCTTTCTCCGAGTCAAACACACACAGG
rJMFF007I11- AAACCTGGAGGAAGAGATTGCTTCAGTTTGTCTGCTTTCTCCGAGTCAAACACACACAGG
rJMFF010B11- AAACCTGGAGGAAGAGATTGCTTCAGTTTGTCTGCTTTCTCCGAGTCAAACACACACAGG
JMFF014B18+ AAACCTGGAGGAAGAGATTGCTTCAGTTTGTCTGCTTTCTCCGAGTCAAACACACACAGG
JMFF010G13+ AAACCTGGAGGAAGAGATTGCTTCAGTTTGTCTGCTTTCTCCGAGTCAAACACACACAGG
rJMFF014B18- AAACCTGGAGGAAGAGATTGCTTCAGTTTGTCTGCTTTCTCCGAGTCAAACACACACAGG
rJMSF027I03- AAACCTGGAGGAAGAGATTGCTTCAGTTTGTCTGCTTTCTCCGAGTCAAACACACACAGG
rJMFF010G13- AAACCTGGAGGAAGAGATTGCTTCAGTTTGTCTGCTTTCTCCGAGTCAAACACACACAGG
JMSF027I03+ AAACCTGGAGGAAGAGATTGCTTCAGTTTGTCTGCTTTCTCCGAGTCAAACACACACAGG
____________________________________________________________
consensus AAACCTGGAGGAAGAGATTGCTTCAGTTTGTCTGCTTTCTCCGAGTCAAACACACACAGG
. : . : . : . : . : . :
JMFF007I11+ GTGTACAGGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTTCCCCTCTTGATC
JMFF010B11+ GTGTACAGGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTTCCCCTCTTGATC
rJMFF007I11- GTGTACAGGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTTCCCCTCTTGATC
rJMFF010B11- GTGTACAGGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTTCCCCTCTTGATC
JMFF014B18+ GTGTACAGGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTTCCCCTCTTGATC
JMFF010G13+ GTGTACAGGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTTCCCCTCTTGATC
rJMFF014B18- GTGTACAGGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTTCCCCTCTTGATC
rJMSF027I03- GTGTACAGGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTTCCCCTCTTGATC
rJMFF010G13- GTGTACAGGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTTCCCCTCTTGATC
JMSF027I03+ GTGTACAGGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTTCCCCTCTTGATC
____________________________________________________________
consensus GTGTACAGGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTTCCCCTCTTGATC
. : . : . : . : . : . :
JMFF007I11+ TTCACTGATCGTGCATCTTTCCTTCTGGCAGTAAGAAGGAAGTCCTTGATCTCATGAATT
JMFF010B11+ TTCACTGATCGTGCATCTTTCCTTCTGGCAGTAAGAAGGAAGTCCTTGATCTCATGAATT
rJMFF007I11- TTCACTGATCGTGCATCTTTCCTTCTGGCAGTAAGAAGGAAGTCCTTGATCTCATGAATT
rJMFF010B11- TTCACTGATCGTGCATCTTTCCTTCTGGCAGTAAGAAGGAAGTCCTTGATCTCATGAATT
JMFF014B18+ TTCACTGATCGTGCATCTTTCCTTCTGGCAGTAAGAAGGAAGTCCTTGATCTCATGAATT
JMFF010G13+ TTCACTGATCGTGCATCTTTCCTTCTGGCAGTAAGAAGGAAGTCCTTGATCTCATGAATT
rJMFF014B18- TTCACTGATCGTGCATCTTTCCTTCTGGCAGTAAGAAGGAAGTCCTTGATCTCATGAATT
rJMSF027I03- TTCACTGATCGTGCATCTTTCCTTCTGGCAGTAAGAAGGAAGTCCTTGATCTCATGAATT
rJMFF010G13- TTCACTGATCGTGCATCTTTCCTTCTGGCAGTAAGAAGGAAGTCCTTGATCTCATGAATT
JMSF027I03+ TTCACTGATCGTGCATCTTTCCTTCTGGCAGTAAGAAGGAAGTCCTTGATCTCATGAATT
____________________________________________________________
consensus TTCACTGATCGTGCATCTTTCCTTCTGGCAGTAAGAAGGAAGTCCTTGATCTCATGAATT
. : . : . : . : . : . :
JMFF007I11+ TGCTTGGGCATTTTCTCTTGCTCCTTCCGAACCCTTCTGCTCAGACTTC
JMFF010B11+ TGCTTGGGCATTTTCTCTTGCTCCTTCCGAACCCTTCTGCTCAGACTTC
rJMFF007I11- TGCTTGGGCATTTTCTCTTGCTCCTTCCGAACCCTTCTGCTCAGACTTC
rJMFF010B11- TGCTTGGGCATTTTCTCTTGCTCCTTCCGAACCCTTCTGCTCAGACTTC
JMFF014B18+ TGCTTGGGCATTTTCTCTTGCTCCTTCCGAACCCTTCTGCTCAGACTTCAAGAGAG
JMFF010G13+ TGCTTGGG-ATTTTCTCTTGCTCCTTCCGAACCCTTCTGCTCAGACTTCAAG
rJMFF014B18- TGCTTGGGCATTTTCTCTTGCTCCTTCCGAACCCTTCTGCTCAGACTTCAAGAGAG
rJMSF027I03- TGCTTGGGCATTTTCTCTTGCTCCTTCCGAACCCTTCTGCTCAGACTTCAAGAGAG
rJMFF010G13- TGCTTGGG-ATTTTCTCTTGCTCCTTCCGAACCCTTCTGCTCAGACTTCAAG
JMSF027I03+ TGCTTGGGCATTTTCTCTTGCTCCTTCCGAACCCTTCTGCTCAGACTTCAAGAGAGGCTC
____________________________________________________________
consensus TGCTTGGGCATTTTCTCTTGCTCCTTCCGAACCCTTCTGCTCAGACTTCAAGAGAGGCTC