Contig 007913:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005N19Sequence331007913 (3)ref|XP_006348039.1|3e-07PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial
JMSF026L10Sequence659007913 (3)ref|XP_006482077.1|5e-31PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial758013985 (4)ref|XP_002522167.1|7e-86pentatricopeptide repeat-containing protein, putative [Ricinus communis] gb|EEF
JMSF026N15Sequence638007913 (3)ref|XP_006482077.1|1e-27PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial723013985 (4)ref|XP_002522167.1|4e-95pentatricopeptide repeat-containing protein, putative [Ricinus communis] gb|EEF

Alignment

This contig is upended


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JMSF026N15+                               TCCTCCACCCATCTATTCATGACATTACTAACAGATGATG
JMSF026L10+            GCGGGTAACTTCATTTCCTTCCTCCACCCATCTATTCATGACATTACTAACAGATGATG
                      ____________________________________________________________
consensus              GCGGGTAACTTCATTTCCTTCCTCCACCCATCTATTCATGACATTACTAACAGATGATG
 
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JMSF026N15+           CTGGATTATCCAAAATTGCCTTGAAAATTTTTGATGTAATTCTTTTCCTGGGAGACTTTT
JMSF026L10+           CTGGATTATCCAAAATTGCCTTGAAAATTTTTGATGTAATTCTTTTCCTGGGAGACTTTT
                      ____________________________________________________________
consensus             CTGGATTATCCAAAATTGCCTTGAAAATTTTTGATGTAATTCTTTTCCTGGGAGACTTTT
 
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JMSF026N15+           TCTCACTGATTTCAGCTTCAGTGTCCGATAAGTTTATTAAGTCCTTAACGTCATCATTAA
JMSF026L10+           TCTCACTGATTTCAGCTTCAGTGTCCGATAAGTTTATTAAGTCCTTAACGTCATCATTAA
                      ____________________________________________________________
consensus             TCTCACTGATTTCAGCTTCAGTGTCCGATAAGTTTATTAAGTCCTTAACGTCATCATTAA
 
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JMSF026N15+           TATCCTCTTCAGAGAGGTCTGACTCGGAGACTAAGTCCTCATTATTATCTGCAATGTCCT
JMSF026L10+           TATCCTCTTCAGAGAGGTCTGACTCGGAGACTAAGTCCTCATTATTATCTGCAATGTCCT
                      ____________________________________________________________
consensus             TATCCTCTTCAGAGAGGTCTGACTCGGAGACTAAGTCCTCATTATTATCTGCAATGTCCT
 
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JMSF026N15+           TTTGGATTGCTCCAGATGTGGCAGGAGATTCAAGATCAGAAAACCCATCCAGCTCATCGT
JMSF026L10+           TTTGGATTGCTCCAGATGTGGCAGGAGATTCAAGATCAGAAAACCCATCCAGCTCATCGT
                      ____________________________________________________________
consensus             TTTGGATTGCTCCAGATGTGGCAGGAGATTCAAGATCAGAAAACCCATCCAGCTCATCGT
 
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JMSF026N15+           CTTCCCCTCCACTGCTCTTTGTGTCTGCCTGTGAAGTGAAGCTGCGAATTCCCCAGAGTG
JMSF005N19+                                       CTGTGAAGTGAAGCTGCGAATTCCCCAGAGTG
JMSF026L10+           CTTCCCCTCCACTGCTCTTTGTGTCTGCCTGTGAAGTGAAGCTGCGAATTCCCCAGAGTG
                      ____________________________________________________________
consensus             CTTCCCCTCCACTGCTCTTTGTGTCTGCCTGTGAAGTGAAGCTGCGAATTCCCCAGAGTG
 
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JMSF026N15+           CCGCAGGTGAACTATGAGCTGTCTTCTGAAATTTTCTTAAAGATAGAAACCTATCAGTTA
JMSF005N19+           CCGCAGGTGAACTATGAGCTGTCTTCTGAAATTTTCTTAAAGATAGAAACCTATCAGTTA
JMSF026L10+           CCGCAGGTGAACTATGAGCTGTCTTCTGAAATTTTCTTAAAGATAGAAACCTATCAGTTA
                      ____________________________________________________________
consensus             CCGCAGGTGAACTATGAGCTGTCTTCTGAAATTTTCTTAAAGATAGAAACCTATCAGTTA
 
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JMSF026N15+           CCGCTTTAGCAGGCCCACAAACTCCAGAATCACAGTCTTCTAAGCAACGATTTGATATAC
JMSF005N19+           CCGCTTTAGCAGGCCCACAAACTCCAGAATCACAGTCTTCTAAGCAACGATTTGATATAC
JMSF026L10+           CCGCTTTAGCAGGCCCACAAACTCCAGAATCACAGTCTTCTAAGCAACGATTTGATATAC
                      ____________________________________________________________
consensus             CCGCTTTAGCAGGCCCACAAACTCCAGAATCACAGTCTTCTAAGCAACGATTTGATATAC
 
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JMSF026N15+           CCAATCCAGGAGACATAATCCGAGTATTATGTATGTTCAATCCTTGCTTCCTGAGGGAAG
JMSF005N19+           CCAATCCAGGAGACATAATCCGAGTATTATGTATGTTCAATCCTTGCTTCCTGAGGGAAG
JMSF026L10+           CCAATCCAGGAGACATAATCCGAGTATTATGTATGTTCAATCCTTGCTTCCTGAGGGAAG
                      ____________________________________________________________
consensus             CCAATCCAGGAGACATAATCCGAGTATTATGTATGTTCAATCCTTGCTTCCTGAGGGAAG
 
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JMSF026N15+           AAGAAGCTCGGCGAAGTGCCCACATGGCGATTAATCGTAGAGGAGCTCTGCTAGCTGAAA
JMSF005N19+           AAGAAGCTCGGCGAAGTGCCCACATGGCGATTAATCGTAGAGGAGCTCTGCTAGCTGAAA
JMSF026L10+           AAGAAGCTCGGCGAAGTGCCCACATGGCGATTAATCGTAGAGGAGCTCTGCTAGCTGAAA
                      ____________________________________________________________
consensus             AAGAAGCTCGGCGAAGTGCCCACATGGCGATTAATCGTAGAGGAGCTCTGCTAGCTGAAA
 
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JMSF026N15+           TGCAACCTAAAGATCGCTACTTTTACAGAGAGGAGAAGGAGACTGAAGGCCTAAA     
JMSF005N19+           TGCAACCTAAAGATCGCTACTTTTACAGAGAGGAGAAGGAGACTGAAGGCCTAAA     
JMSF026L10+           TGCAACCTAAAGATCGCTACTTTTACAGAGAGGAGAAGGAGACTGAAGGCCTAAACCCTC
                      ____________________________________________________________
consensus             TGCAACCTAAAGATCGCTACTTTTACAGAGAGGAGAAGGAGACTGAAGGCCTAAACCCTC