Contig 007901:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020N23Sequence361007901 (2)ref|XP_010247395.1|6e-09PREDICTED: vacuolar protein sorting-associated protein 27 [Nelumbo nucifera]244017137
JMSF025A24Sequence316007901 (2)ref|XP_011093907.1|1e-26PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Sesamu210019325ref|XP_009620823.1|1e-17PREDICTED: uncharacterized protein LOC104112566 isoform X2 [Nicotiana tomentosi

Alignment

This contig is upended


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JMSF020N23+                                                                    GNT
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consensus                                                                      GNT
 
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JMSF020N23+           TTTTNCNAAAAAAAAAAAAAAATTAATTAAAGGAAAAAACTTCCCACATCTGAAGAATCG
                      ____________________________________________________________
consensus             TTTTNCNAAAAAAAAAAAAAAATTAATTAAAGGAAAAAACTTCCCACATCTGAAGAATCG
 
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JMSF020N23+           ATCCATGTCTCAATTCCTTTATTAACAACCAAAAAGCAGTTTCCATCGCAGAAAATGCAT
                      ____________________________________________________________
consensus             ATCCATGTCTCAATTCCTTTATTAACAACCAAAAAGCAGTTTCCATCGCAGAAAATGCAT
 
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JMSF020N23+           ATGCAGATCGGATGGAGAGGTAACTTCACTCCACATCAGAGTGATCATCGGATAATATCA
                      ____________________________________________________________
consensus             ATGCAGATCGGATGGAGAGGTAACTTCACTCCACATCAGAGTGATCATCGGATAATATCA
 
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JMSF020N23+           GAAACGGCTTTAAATGAGGAAAATTAAAATAAATAAGCAATTACAGCGTACCCGCCGCCG
JMSF025A24+                                                              CCGCCGCCG
                      ____________________________________________________________
consensus             GAAACGGCTTTAAATGAGGAAAATTAAAATAAATAAGCAATTACAGCGTACCCGCCGCCG
 
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JMSF020N23+           GAAGGTGCTGAAGCTACATTTGCAGACGTCGCAGCGCGATGCTTCCTGAAAGGGCGGGGG
JMSF025A24+           GAAGGTGCTGAAGNTACATTTGCAGACGTCGCAGCGCGATGCTTCCNGAAAGGGCGGGGG
                      ____________________________________________________________
consensus             GAAGGTGCTGAAGCTACATTTGCAGACGTCGCAGCGCGATGCTTCCTGAAAGGGCGGGGG
 
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JMSF020N23+           TTCCGACGACATTTTCCGACAAAACGCAGCACTCGATCCTGCTATCGGCCTTTCCACC  
JMSF025A24+           TTCCGNCGACATTTTCNGACAAAACGCAGCACTCGATCCTGCTATCGGCCTTTCCACCCC
                      ____________________________________________________________
consensus             TTCCGACGACATTTTCCGACAAAACGCAGCACTCGATCCTGCTATCGGCCTTTCCACCCC