Contig 007899:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF008J19-                                                                AAACAA
                      ____________________________________________________________
consensus                                                                   AAACAA
 
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rJMSF008J19-          AGAAAACTTGCCGTACTTATGACGGGGGGAAACAATGTGGCAACCAATGGAGGTCTCAAA
rJMSF024N01-              AACTTGCCGTACTTATGACGGGGGGAAACAATGTGGCAACCAATGGAGGTCTCAAA
                      ____________________________________________________________
consensus             AGAAAACTTGCCGTACTTATGACGGGGGGAAACAATGTGGCAACCAATGGAGGTCTCAAA
 
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rJMSF008J19-          TTTTGGTAGTTATAGCATTTCAGTTTTCACAATTATGCTATTTTATTCACTATCACGAAC
rJMSF024N01-          TTTTGGTAGTTATAGCATTTCAGTTTTCACAATTATGCTATTTTATTCACTATCACGAAC
                      ____________________________________________________________
consensus             TTTTGGTAGTTATAGCATTTCAGTTTTCACAATTATGCTATTTTATTCACTATCACGAAC
 
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rJMSF008J19-          AATTTAAAGGAAAACAAAAAAAATCACATTGAATTGTGGCTGCGCTGTAATGACTTCTGT
rJMSF024N01-          AATTTAAAGGAAAACAAAAAAAATCACATTGAATTGTGGCTGCGCTGTAATGACTTCTGT
                      ____________________________________________________________
consensus             AATTTAAAGGAAAACAAAAAAAATCACATTGAATTGTGGCTGCGCTGTAATGACTTCTGT
 
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rJMSF008J19-          TTTGAGAAACCATACTCTTTATCTTCCAGATGACTCTAAATCTCTAACAAACTTCTTAGC
rJMSF024N01-          TTTGAGAAACCATACTCTTTATCTTCCAGATGACTCTAAATCTCTAACAAACTTCTTAGC
                      ____________________________________________________________
consensus             TTTGAGAAACCATACTCTTTATCTTCCAGATGACTCTAAATCTCTAACAAACTTCTTAGC
 
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rJMSF008J19-          CTGCTCTAGAGTTAAAAACATTATCACATTCCATGAGCCTAGACGACCGAAGTTTGGTAT
rJMSF024N01-          CTGCTCTAGAGTTAAAAACATTATCACATTCCATGAGCCTAGACGACCGAAGTTTGGTAT
                      ____________________________________________________________
consensus             CTGCTCTAGAGTTAAAAACATTATCACATTCCATGAGCCTAGACGACCGAAGTTTGGTAT
 
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rJMSF008J19-          AAAGCCTTTATAGAATGCAAGCGGTCCATCATTCCTCAAAGTCTTCACAAAACAATCCAG
rJMSF024N01-          AAAGCCTTTATAGAATGCAAGCGGTCCATCATTCCTCAAAGTCTTCACAAAACAATCCAG
                      ____________________________________________________________
consensus             AAAGCCTTTATAGAATGCAAGCGGTCCATCATTCCTCAAAGTCTTCACAAAACAATCCAG
 
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rJMSF008J19-          TGTATTTTTGTATGTTGAATCTCCCATCATTCTCGACTTAACCACATCAACTGGGGACCC
rJMSF024N01-          TGTATTTTTGTATGTTGAATCTCCCATCATTCTCGACTTAACCACATCAACTGGGGACCC
                      ____________________________________________________________
consensus             TGTATTTTTGTATGTTGAATCTCCCATCATTCTCGACTTAACCACATCAACTGGGGACCC
 
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rJMSF008J19-          TATGCAGACTGCAAAGAAACCAGCTCCGAGACCGGATAAAAGATGAGTAAGCACATTGTC
rJMSF024N01-          TATGCAGACTGCAAAGAAACCAGCTCCGAGACCGGATAAAAGATGAGTAAGCACATTGTC
                      ____________________________________________________________
consensus             TATGCAGACTGCAAAGAAACCAGCTCCGAGACCGGATAAAAGATGAGTAAGCACATTGTC
 
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rJMSF008J19-          TGTGAACCCAGGAATCTTTAGAATTGTCTGCTTCACTTGGTCATAACTTGCTAATTCAGC
rJMSF024N01-          TGTGAACCCAGGAATCTTTAGAATTGTCTGCTTCACTTGGTCATAACTTGCTAATTCAGC
                      ____________________________________________________________
consensus             TGTGAACCCAGGAATCTTTAGAATTGTCTGCTTCACTTGGTCATAACTTGCTAATTCAGC
 
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rJMSF008J19-          TGCATTTATTATAGCATTTCGCCCAATATTTGGTCCAATTCCAGTCCACAGAGCTGCAAT
rJMSF024N01-          TGCATTTATTATAGCATTTCGCCCAATATTTGGTCCAATTCCAGTCCACAGAGCTGCAAT
                      ____________________________________________________________
consensus             TGCATTTATTATAGCATTTCGCCCAATATTTGGTCCAATTCCAGTCCACAGAGCTGCAAT
 
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rJMSF008J19-          TCCTTCTTGTCTCACTATCGTAGAATAAGCATTTAATGCTCCAGAATAACGCCTTGGCAC
rJMSF024N01-          TCCTTCTTGTCTCACTATCGTAGAATAAGCATTTAATGCTCCAGAATAACGCCTTGGCAC
                      ____________________________________________________________
consensus             TCCTTCTTGTCTCACTATCGTAGAATAAGCATTTAATGCTCCAGAATAACGCCTTGGCAC
 
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rJMSF008J19-          ACCAGGAGGTAATTTGCCTTCAGCTTGAAGCCTCACCTTAACAAG               
rJMSF024N01-          ACCAGGAGGTAATTTGCCTTCAGCTTGAAGCCTCACCTTAACAAGATCAGTAGGGTTTGC
JMSF024N01+                                            CACCTTAACAAGATCAGTAGGGTTTGC
                      ____________________________________________________________
consensus             ACCAGGAGGTAATTTGCCTTCAGCTTGAAGCCTCACCTTAACAAGATCAGTAGGGTTTGC
 
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rJMSF024N01-          AATCGTTATGCCCAGAGC                                          
JMSF024N01+           AATCGTTATGCCCAGAGCACCAGTTGTGAGTGCAGCAAGGACTTTCTTTGACAGTGGCAC
                      ____________________________________________________________
consensus             AATCGTTATGCCCAGAGCACCAGTTGTGAGTGCAGCAAGGACTTTCTTTGACAGTGGCAC
 
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JMSF024N01+           ATCCCCAACATGATCTTTACCCACATAAAAGTTCTTTACAGGTTCATACAACCCAATTCG
                      ____________________________________________________________
consensus             ATCCCCAACATGATCTTTACCCACATAAAAGTTCTTTACAGGTTCATACAACCCAATTCG
 
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JMSF024N01+           TAAGCCACCAAATAGACATTGACGATGTAATCCTGGTACAATACCCTTCCACAGAGCAGC
                      ____________________________________________________________
consensus             TAAGCCACCAAATAGACATTGACGATGTAATCCTGGTACAATACCCTTCCACAGAGCAGC
 
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JMSF024N01+           TAGACCTTCTTCCCTGGCAATTGTTCCAACTGTACCCAACATTCCCCTGTACTTTGGTAA
                      ____________________________________________________________
consensus             TAGACCTTCTTCCCTGGCAATTGTTCCAACTGTACCCAACATTCCCCTGTACTTTGGTAA
 
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JMSF008J19+                                             AGCTGAAGCCTAACCTTAGCAGTATC
JMSF024N01+           AGTCATTCCATCTCCTTCAACAGCTTTCTTTTGAAGCTGAAGCCTAACCTTAGCAGTATC
                      ____________________________________________________________
consensus             AGTCATTCCATCTCCTTCAACAGCTTTCTTTTGAAGCTGAAGCCTAACCTTAGCAGTATC
 
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JMSF008J19+           CAATGGGATAGTACAAATCTCGGCGAAGCAAGCGGCAAAAGCGCTACTGGAAAAGGTACC
JMSF024N01+           CAATGGGATAGTACAAATCTCGGCGAAGCAAGCGGCAAAAGCGCTACTGGAAAAGGTACC
                      ____________________________________________________________
consensus             CAATGGGATAGTACAAATCTCGGCGAAGCAAGCGGCAAAAGCGCTACTGGAAAAGGTACC
 
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JMSF008J19+           AGCAAACGATATGTCCGATTTGGCGTTCCCGTGATCACCTCCCATCGTTAGCAACGGAGA
JMSF024N01+           AGCAAACGATATGTCCGATTTGGCGTTCCCGTGATCACCTCCCATCGTTAGCAACGGAGA
                      ____________________________________________________________
consensus             AGCAAACGATATGTCCGATTTGGCGTTCCCGTGATCACCTCCCATCGTTAGCAACGGAGA
 
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JMSF008J19+           AATGTGACCAAATCCTGGCGTTAGCGTTTTACGCAGATCACCGTGAGCGGGGCAGCAGGA
JMSF024N01+           AATGTGACCAAATCCTGGCGTTAGCGTTTTACGCAGATCACCGTGAGCGGGGCAGCAGGA
                      ____________________________________________________________
consensus             AATGTGACCAAATCCTGGCGTTAGCGTTTTACGCAGATCACCGTGAGCGGGGCAGCAGGA
 
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JMSF008J19+           AGAGAAGGAAGGAGAAGAAGATAGATTTTGTTTATATAAAGAGAGACGGAAAACACTGAT
JMSF024N01+           AGAGAAGGAAGGAGAAGAAGATAGATTTTGTTTATATAAAGAGAGACGGAAAACACTGAT
                      ____________________________________________________________
consensus             AGAGAAGGAAGGAGAAGAAGATAGATTTTGTTTATATAAAGAGAGACGGAAAACACTGAT
 
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JMSF008J19+           TTTGGTAAGAATGAGGAAATATAGACAGAGCACTTGAGGAGACAGGGAAGGAGAGCGTCC
JMSF024N01+           TTTGGTAAGAATGAGGAAATATAGACAGAGCACTTGAGGAGACAGGGAAGGAGAGCGTCC
                      ____________________________________________________________
consensus             TTTGGTAAGAATGAGGAAATATAGACAGAGCACTTGAGGAGACAGGGAAGGAGAGCGTCC