Contig 007895:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018F10Sequence271007895 (2)gb|EYU43576.1|6e-11hypothetical protein MIMGU_mgv1a018184mg, partial [Erythranthe guttata]764011327 (2)ref|XP_006349972.1|4e-19PREDICTED: F-box/kelch-repeat protein At3g06240-like [Solanum tuberosum]
JMSF024H20Sequence671007895 (2)ref|XP_006349972.1|6e-25PREDICTED: F-box/kelch-repeat protein At3g06240-like [Solanum tuberosum]761011327 (2)ref|XP_006349972.1|3e-13PREDICTED: F-box/kelch-repeat protein At3g06240-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF024H20+                                                            TATATGCAGAA
                      ____________________________________________________________
consensus                                                              TATATGCAGAA
 
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JMSF024H20+           GACGTAGGCGGTTGTTTCGTTGGTTGATTTGGAGCGGACGGCCTTAACGACCTTGTAATC
                      ____________________________________________________________
consensus             GACGTAGGCGGTTGTTTCGTTGGTTGATTTGGAGCGGACGGCCTTAACGACCTTGTAATC
 
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JMSF024H20+           GTCTATGGAGGCGTCGTAACCGAATCCGTAGAACGCGGCGGGGTTTGCGTGAGGAGGATT
                      ____________________________________________________________
consensus             GTCTATGGAGGCGTCGTAACCGAATCCGTAGAACGCGGCGGGGTTTGCGTGAGGAGGATT
 
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JMSF024H20+           AGGCGGTGGGCCCGGCAACTCGCGGGCCGATCTTATACAAGGGTTCCAAAGAATGATCCT
                      ____________________________________________________________
consensus             AGGCGGTGGGCCCGGCAACTCGCGGGCCGATCTTATACAAGGGTTCCAAAGAATGATCCT
 
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JMSF024H20+           TTCCAGGCCGTCGTACTGGTACAACAGAGCAACCAGGCCGTGGCAGGAGCCGATGACGTG
                      ____________________________________________________________
consensus             TTCCAGGCCGTCGTACTGGTACAACAGAGCAACCAGGCCGTGGCAGGAGCCGATGACGTG
 
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JMSF024H20+           GCGATCTATGCACGGGTCCTCGGGGCCGAGAGGATCGTCGAGGTCCACCAAGACATCGTC
                      ____________________________________________________________
consensus             GCGATCTATGCACGGGTCCTCGGGGCCGAGAGGATCGTCGAGGTCCACCAAGACATCGTC
 
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JMSF024H20+           GGAGTCTGAGGTGGATTGGAGAGCCGACGGCGACTCATAATCCAGTGACTCGTAGCACCA
                      ____________________________________________________________
consensus             GGAGTCTGAGGTGGATTGGAGAGCCGACGGCGACTCATAATCCAGTGACTCGTAGCACCA
 
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JMSF018F10+                                   GTCGGTGGGATTGGATAGGGTTCGATCGAGATGTTT
JMSF024H20+           ATAGGTGAGGATTCTGAAAGGGTTGTCGGTGGGATTGGATAGGGTTCGATCGAGATGTTT
                      ____________________________________________________________
consensus             ATAGGTGAGGATTCTGAAAGGGTTGTCGGTGGGATTGGATAGGGTTCGATCGAGATGTTT
 
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JMSF018F10+           CTTCACAAAATTTCTACTGGAGATTAGATTGTGCCAGGATTTAGAAACGCATTTGCATCT
JMSF024H20+           CTTCACAAAATTTCTACTGGAGATTAGATTGTGCCAGGATTTAGAAACGCATTTGCATCT
                      ____________________________________________________________
consensus             CTTCACAAAATTTCTACTGGAGATTAGATTGTGCCAGGATTTAGAAACGCATTTGCATCT
 
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JMSF018F10+           TCCTAGTGGTTTGAGTGGCAACCTCGAGAGGATCTCTTCAATGGCGTCTTGCGGCAGCTT
JMSF024H20+           TCCTAGTGGTTTGAGTGGCAACCTCGAGAGGATCTCTTCAATGGCGTCTTGCGGCAGCTT
                      ____________________________________________________________
consensus             TCCTAGTGGTTTGAGTGGCAACCTCGAGAGGATCTCTTCAATGGCGTCTTGCGGCAGCTT
 
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JMSF018F10+           TCTCATATCCATTATCTATCTATCTTTTGTTGTTCGTTGCTGATATGATCTTATCCATTA
JMSF024H20+           TCTCATATCCATTATCTATCTATCTTTTGTTGTTCGTTGCTGATATGATCTTATCCATTA
                      ____________________________________________________________
consensus             TCTCATATCCATTATCTATCTATCTTTTGTTGTTCGTTGCTGATATGATCTTATCCATTA
 
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JMSF018F10+           AGAAGCTAAGGTTGAGATTTTAATGGCGAATTTGTTGACTTCTTTGCCTGC         
JMSF024H20+           AGAAGCTAAGGTTGAGATTTTAATGGCGAATTTGTTGACTTCTTTGCCTGCGCTAGCTTC
                      ____________________________________________________________
consensus             AGAAGCTAAGGTTGAGATTTTAATGGCGAATTTGTTGACTTCTTTGCCTGCGCTAGCTTC