Contig 007890:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS062E03+                       CAATTTCCTTGGAAGGTTTGTGATTTTGAGGTCAAGAATCCTTCCCAG
                      ____________________________________________________________
consensus                         CAATTTCCTTGGAAGGTTTGTGATTTTGAGGTCAAGAATCCTTCCCAG
 
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JMFS062E03+           CCCAATGTCTTTTATACTCTGGGGTTGTTGATTGGTTAGGGCTTTAATGGGTTTTGTTAG
JMSF023K19+                         TACTCTGGGGTTGTTGATTGGTTAGGGCTTTAATGGGTTTTGTTAG
                      ____________________________________________________________
consensus             CCCAATGTCTTTTATACTCTGGGGTTGTTGATTGGTTAGGGCTTTAATGGGTTTTGTTAG
 
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JMFS062E03+           CTGTGTTGGCAGGGGCCTTATCTTTAGGTCAGTCTCTTCATTCTCTTGCTCCAATGTGTC
JMSF023K19+           CTGTGTTGGCAGGGGCCTTATCTTTAGGTCAGTCTCTTCATTCTCTTGCTCCAATGTGTC
                      ____________________________________________________________
consensus             CTGTGTTGGCAGGGGCCTTATCTTTAGGTCAGTCTCTTCATTCTCTTGCTCCAATGTGTC
 
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JMFS062E03+           TATCTCATCAGCTGAGCTATCATCAACTTCTTGTTCATGCACTTCTTCATCTGTTTCTGT
JMSF023K19+           TATCTCATCAGCTGAGCTATCATCAACTTCTTGTTCATGCACTTCTTCATCTGTTTCTGT
                      ____________________________________________________________
consensus             TATCTCATCAGCTGAGCTATCATCAACTTCTTGTTCATGCACTTCTTCATCTGTTTCTGT
 
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JMFS062E03+           ATCATCTTCCATTCTCTCAAGGAATGTCATTGCTTCCTGCTTTCTCTGCTGTTTTGGCCT
JMSF023K19+           ATCATCTTCCATTCTCTCAAGGAATGTCATTGCTTCCTGCTTTCTCTGCTGTTTTGGCCT
                      ____________________________________________________________
consensus             ATCATCTTCCATTCTCTCAAGGAATGTCATTGCTTCCTGCTTTCTCTGCTGTTTTGGCCT
 
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JMFS062E03+           TGACGAGTCTCCGTGTTCTAATACCTTTCTTTTGTTGTCTTGATATTTTTCTGGAGTCGC
JMSF004G02+                                                             CTGGAGTCGC
JMSF008M18+                                                   TGATATTTTTCGGGAGTCGC
JMSF047F01+                                                 CTTGATATTTTTCTGGAGTCGC
JMSF023K19+           TGACGAGTCTCCGTGTTCTAATACCTTTCTTTTGTTGTCTTGATATTTTTCTGGAGTCGC
                      ____________________________________________________________
consensus             TGACGAGTCTCCGTGTTCTAATACCTTTCTTTTGTTGTCTTGATATTTTTCTGGAGTCGC
 
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JMFS062E03+           GATTTTGAAGTTTCGCGATCTAGGGATTTTTGTTTGTCGGCAAACGGTAACAACATCTCG
JMSF004G02+           GATTTTGAAGTTTCGCGATCTAGGGATTTTTGTTTGTCGGCAAACGGTANCAACATCTCG
JMSF008M18+           ATTTTTGAAGTTTCGCGATCTAGGGTTTTTTGGTNGTCGGCAAACGGTAAAAACATCTCG
JMSF047F01+           ATTTTTGAAGTTTCGCGATCTAGGGTTTTTTGGTTGTCGGCAAACGGTAAAAACATCTCG
JMSF023K19+           GATTTTGAAGTTTCGCGATCTAGGGATTTTTGTTTGTCGGCAAACGGTAACAACATCTCG
                      ____________________________________________________________
consensus             GATTTTGAAGTTTCGCGATCTAGGGATTTTTGTTTGTCGGCAAACGGTAACAACATCTCG
 
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JMFS062E03+           AAATAGCCGTATGTAAGGAACGAAAGAGTTAAGTATGGATTTTGGAA---AGGACTGAGA
JMSF004G02+           AAATAGCCGTATGTAAGGAACGAAAGAGTTAAGTATGGATTTTGGAA---AGGACTGAGA
JMSF008M18+           AAATAGCCGTATGTAAGGAACGAAAGAGTTAAGTATGGATTTTGGAAAGAAGGACTGAAA
JMSF047F01+           AAATAGCCGTATGTAAGGAACGAAAGAGTTAAGTATGGATTTTGGAAAGAAGGACTGAAA
JMSF023K19+           AAATAGCCGTATGTAAGGAACGAAAGAGTTAAGTATGGATTTTGGAA---AGGACTGAGA
                      ____________________________________________________________
consensus             AAATAGCCGTATGTAAGGAACGAAAGAGTTAAGTATGGATTTTGGAA---AGGACTGAGA
 
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JMFS062E03+           TTTCCACAAGCACAAATAGAGAGGCGGAGATAGATTGGAGAGTATGTCTCCAATCTTTTT
JMSF004G02+           TTTCCACAAGCACAAATAGAGAGGCGGAGATAGATTGGAGAGTATGTCTCCAATCTTTTT
JMSF008M18+           TTTCCACAAGCACAAATAAGAGAGGTGGAGTAGATTGGAGAGTATGTCTCCAATCTTTTT
JMSF047F01+           TTTCCACAAGCACAAATAAGAGAGGTGGAGTAGATTGGAGAGTATGTCTCCAATC-TTTT
JMSF023K19+           TTTCCACAAGCACAAATAGAGAGGCGGAGATAGATTGGAGAGTATGTCTCCAATCTTTTT
                      ____________________________________________________________
consensus             TTTCCACAAGCACAAATAGAGAGGCGGAGATAGATTGGAGAGTATGTCTCCAATCTTTTT
 
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JMFS062E03+           TGAAAAGCTNATATATTTAGTGAAACAGAGGAGTGTAGAGTACAGAGAAGTGATCGGATA
JMSF004G02+           TGANAAGCT-ATATATTTAGCGAAACAGAGGAGTGTAGAGTACAGANAAGTGATCGGATA
JMSF008M18+           TGAAAAGCT-ATATACTCAGTGAAATGGAGGAGTGTTTAGTACAGAGAAGTGATCGGAAA
JMSF047F01+           TGAAAAGCT-ATATACTCAGTGAAATGGAGGAGTGTTTAGTACAGAGAAGTGATCGGAAA
JMSF023K19+           TGAAAAGCT-ATATATTTAGTGAAACAGAGGAGTGTAGAGTACAGAGAAGTGATCGGATA
                      ____________________________________________________________
consensus             TGAAAAGCT-ATATATTTAGTGAAACAGAGGAGTGTAGAGTACAGAGAAGTGATCGGATA
 
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JMFS062E03+           GGATTGACTGTAAAATCTAGGGTTAGAGTT                              
JMSF004G02+           GGANTGACTGTAAAATCTAGGGTTAGAGTTGTGTNTCCGGTGATCTCTCCACAGAAGATG
JMSF008M18+           GGATTGACTGTAAGATCTAGGGTTAGAGTTGTGTTTCCGGTGAACTCTCCAAAGAAGATG
JMSF047F01+           GGATTGACTGTAAGATCTAGGGTTAGAGTTGTGTTTCCGGTGAACTCTCCAAAGAAGATG
JMSF023K19+           GGATTGACTGTAAAATCTAGGGTTAGAGTTGTGTTTCCGGTGATCTCTCCACAGAAGATG
                      ____________________________________________________________
consensus             GGATTGACTGTAAAATCTAGGGTTAGAGTTGTGTTTCCGGTGATCTCTCCACAGAAGATG
 
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JMSF004G02+           CTGCGTCGATGAGAGGAGAATTC                                     
JMSF008M18+           TTGCGTCGATGAGAGGAGAATTCGTAT                                 
JMSF047F01+           TTGCGTCGATGAGAGGAGAATTCGTATGGAGAGGTTCCGGCGGCGCAGCTT         
JMSF023K19+           CTGCGTCGATGAGAGGAGAATTCGTATGGAGAGGTTCCGGCTGCGCAGCTTTGTGTGTGC
                      ____________________________________________________________
consensus             TTGCGTCGATGAGAGGAGAATTCGTATGGAGAGGTTCCGGCTGCGCAGCTTTGTGTGTGC